Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.96085 * 2 1 4 4 C 1.33239 * 109.82920 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46625 * 345.01279 * 5 4 3 7 7 C 1.52993 * 109.47159 * 105.01656 * 5 4 3 8 8 N 1.46503 * 109.46943 * 225.01717 * 5 4 3 9 9 C 1.34772 * 120.00150 * 154.99716 * 8 5 4 10 10 O 1.21589 * 119.99837 * 0.02562 * 9 8 5 11 11 N 1.34772 * 120.00116 * 179.97438 * 9 8 5 12 12 C 1.46505 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47041 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00252 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00413 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47135 * 90.00170 * 18 16 14 20 20 H 1.48501 * 109.47205 * 210.00401 * 18 16 14 21 21 H 1.48501 * 109.46750 * 329.99909 * 18 16 14 22 22 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 23 23 N 1.34428 * 125.96156 * 180.02562 * 2 1 3 24 24 H 0.97003 * 126.82574 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47240 * 90.00565 * 1 2 3 26 26 H 1.09010 * 109.47044 * 210.00470 * 1 2 3 27 27 H 1.09002 * 109.47122 * 330.00306 * 1 2 3 28 28 H 1.09007 * 109.47033 * 299.99500 * 7 5 4 29 29 H 1.08997 * 109.47484 * 59.99753 * 7 5 4 30 30 H 1.09002 * 109.47061 * 180.02562 * 7 5 4 31 31 H 0.97002 * 119.99883 * 334.99757 * 8 5 4 32 32 H 0.97002 * 120.00374 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46754 * 299.99611 * 12 11 9 34 34 H 1.08997 * 109.46784 * 60.00173 * 12 11 9 35 35 H 1.08999 * 109.47061 * 300.00211 * 13 12 11 36 36 H 1.09000 * 109.46752 * 59.99664 * 13 12 11 37 37 H 0.97002 * 120.00197 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 1 4.4062 2.6276 -0.2671 7 6 5.3698 1.6471 1.3916 8 7 5.7255 1.1605 -0.9787 9 6 6.5912 2.0353 -1.5280 10 8 6.5523 3.2088 -1.2120 11 7 7.5006 1.6092 -2.4267 12 6 8.4420 2.5600 -3.0234 13 6 9.3589 1.8237 -4.0023 14 6 10.3268 2.8019 -4.6165 15 1 10.2913 3.8445 -4.3370 16 6 11.2578 2.3659 -5.5352 17 7 11.3008 1.0963 -5.8759 18 14 12.4581 3.5782 -6.2961 19 1 13.6836 3.6519 -5.4607 20 1 12.8180 3.1261 -7.6641 21 1 11.8268 4.9204 -6.3684 22 7 3.6195 -0.6168 -0.0004 23 7 2.2964 -1.0881 -0.0005 24 1 2.0094 -2.0147 -0.0006 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5140 27 1 -0.3633 0.8900 0.5138 28 1 4.6345 1.9917 2.1188 29 1 5.7007 0.6432 1.6573 30 1 6.2245 2.3236 1.3911 31 1 5.7567 0.2243 -1.2305 32 1 7.5324 0.6728 -2.6780 33 1 7.8885 3.3338 -3.5554 34 1 9.0428 3.0180 -2.2377 35 1 9.9123 1.0501 -3.4699 36 1 8.7583 1.3654 -4.7879 37 1 11.9561 0.7895 -6.5220 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323278591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = 40.244998 kcal Electronic energy + Delta-G solvation = -19405.115121 eV Core-core repulsion = 16218.909004 eV Total energy + Delta-G solvation = -3186.206118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.51691 -39.58971 -36.06368 -34.59533 -33.01065 -32.74342 -32.66256 -30.61099 -28.95421 -28.33503 -25.00002 -24.20306 -21.79157 -21.04411 -20.54901 -20.19246 -18.54238 -17.68910 -16.42274 -16.18907 -15.96711 -15.07466 -14.59642 -14.56291 -14.37119 -13.89317 -13.66574 -13.45585 -13.27796 -13.20366 -12.61591 -12.29858 -12.23888 -12.02886 -11.47199 -11.14240 -10.99728 -10.59581 -10.44648 -10.36036 -10.26653 -9.92977 -9.81097 -9.50850 -9.21822 -9.04445 -8.44959 -8.20720 -6.05394 -4.07801 1.21579 2.25227 2.43275 3.05286 3.32704 3.38603 3.43390 3.58251 3.70266 4.20064 4.40612 4.44409 4.74142 4.89143 4.95855 5.17869 5.29742 5.30852 5.31736 5.59912 5.83574 5.88133 6.00142 6.21112 6.35334 6.45917 6.58395 6.68649 6.83384 7.05799 7.28819 7.61860 7.68531 7.75148 7.94206 8.30358 8.48102 8.97109 9.04289 9.56749 11.06354 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.002918 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.268632 B = 9593.852908 C = 9869.669773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.530 5.530 4 C 0.229 3.771 5 C 0.259 3.741 6 H 0.115 0.885 7 C -0.156 4.156 8 N -0.746 5.746 9 C 0.703 3.297 10 O -0.595 6.595 11 N -0.737 5.737 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 N -0.305 5.305 23 N -0.482 5.482 24 H 0.441 0.559 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.398 0.602 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 -7.195 13.303 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.055 4.055 5 C 0.150 3.850 6 H 0.133 0.867 7 C -0.216 4.216 8 N -0.404 5.404 9 C 0.403 3.597 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.018 3.982 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.135 5.135 23 N -0.201 5.201 24 H 0.286 0.714 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.232 0.768 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.031 -6.208 13.448 25.723 hybrid contribution 0.322 -1.165 -0.744 1.419 sum -20.708 -7.373 12.704 25.389 Atomic orbital electron populations 1.20414 0.83433 1.05082 1.04753 1.24455 0.96719 0.82740 0.95644 1.70359 1.01085 1.29503 1.24984 1.24324 0.93400 0.90108 0.97629 1.18785 0.81355 0.95116 0.89727 0.86674 1.22178 1.01831 1.03012 0.94582 1.45114 1.36613 1.11594 1.47054 1.15962 0.79478 0.84799 0.79499 1.90892 1.74462 1.15731 1.66256 1.45525 1.35872 1.12972 1.44674 1.21602 0.89426 0.91203 0.96007 1.19329 0.93660 0.96210 0.93312 1.21060 1.15893 0.94926 1.23928 0.92180 1.24999 0.97553 0.95285 0.96521 1.69961 1.35884 1.14253 1.33337 0.86508 0.81249 0.81357 0.78419 1.20571 1.21226 1.19701 1.77965 0.96765 1.12222 1.26504 1.47998 1.04263 1.10100 1.57707 0.71382 0.88824 0.89817 0.88179 0.91521 0.92083 0.90324 0.76777 0.77366 0.92717 0.92682 0.95954 0.95997 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.28 2.40 8.24 -155.70 -1.28 1.12 16 3 N -0.53 -6.50 11.19 -8.16 -0.09 -6.59 16 4 C 0.23 2.95 6.95 -156.85 -1.09 1.86 16 5 C 0.26 3.54 3.12 -69.08 -0.22 3.32 16 6 H 0.12 1.75 7.58 -51.93 -0.39 1.36 16 7 C -0.16 -1.90 9.47 37.15 0.35 -1.54 16 8 N -0.75 -10.90 5.07 -59.81 -0.30 -11.21 16 9 C 0.70 12.95 8.53 -86.93 -0.74 12.21 16 10 O -0.59 -13.00 16.01 5.29 0.08 -12.92 16 11 N -0.74 -13.69 5.56 -65.22 -0.36 -14.06 16 12 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.65 9.11 -34.45 -0.31 -14.96 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 N -0.31 -3.60 12.46 32.42 0.40 -3.19 16 23 N -0.48 -3.92 7.45 32.62 0.24 -3.68 16 24 H 0.44 1.87 8.96 -182.33 -1.63 0.23 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.07 8.14 -51.92 -0.42 -0.35 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.40 5.17 8.34 -40.82 -0.34 4.83 16 32 H 0.39 6.40 8.49 -40.82 -0.35 6.06 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -35.38 324.79 -9.07 -44.46 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.48 Total: 4.51 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.17 Total: 6.92 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.63 Total: -64.52 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.38 -9.07 -44.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323278591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.701 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds