Wall clock time and date at job start Mon Mar 30 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34943 * 126.03414 * 2 1 4 4 C 1.35316 * 107.74531 * 180.25880 * 3 2 1 5 5 C 1.50700 * 126.04188 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47109 * 20.00291 * 5 4 3 7 7 C 1.52999 * 109.47187 * 260.00078 * 5 4 3 8 8 O 1.42899 * 109.46982 * 304.99879 * 7 5 4 9 9 N 1.46503 * 109.47278 * 140.00149 * 5 4 3 10 10 C 1.34773 * 119.99917 * 205.00439 * 9 5 4 11 11 O 1.21282 * 120.00466 * 359.97438 * 10 9 5 12 12 C 1.50706 * 119.99723 * 179.97438 * 10 9 5 13 13 C 1.53005 * 109.47104 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47250 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99980 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00437 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99797 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47340 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46757 * 120.00081 * 18 16 14 21 21 H 1.48498 * 109.46996 * 239.99741 * 18 16 14 22 22 C 1.39873 * 107.91987 * 0.02562 * 4 3 2 23 23 N 1.30832 * 108.20166 * 0.02562 * 22 4 3 24 24 H 1.08997 * 109.47763 * 269.71272 * 1 2 3 25 25 H 1.09004 * 109.47211 * 29.71722 * 1 2 3 26 26 H 1.09012 * 109.46942 * 149.71408 * 1 2 3 27 27 H 1.07996 * 126.13000 * 0.26422 * 3 2 1 28 28 H 1.08998 * 109.46827 * 65.00134 * 7 5 4 29 29 H 1.09000 * 109.46910 * 184.99914 * 7 5 4 30 30 H 0.96706 * 113.99671 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00026 * 24.99645 * 9 5 4 32 32 H 1.09000 * 109.47475 * 299.99768 * 12 10 9 33 33 H 1.09001 * 109.47193 * 60.00068 * 12 10 9 34 34 H 1.09000 * 109.47210 * 300.00476 * 13 12 10 35 35 H 1.09001 * 109.46594 * 60.00247 * 13 12 10 36 36 H 0.96997 * 120.00522 * 180.02562 * 17 16 14 37 37 H 1.07998 * 125.89584 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6666 -0.0058 5 6 4.7679 1.5454 -0.0074 6 1 4.5012 2.5407 0.3481 7 6 5.3233 1.6436 -1.4296 8 8 5.5639 0.3303 -1.9388 9 7 5.7848 0.9678 0.8751 10 6 6.7208 1.7603 1.4339 11 8 6.7216 2.9515 1.2059 12 6 7.7664 1.1662 2.3421 13 6 8.6997 2.2727 2.8377 14 6 9.7456 1.6787 3.7454 15 1 9.7451 0.6179 3.9481 16 6 10.7032 2.4893 4.3169 17 7 10.7042 3.7809 4.0697 18 14 11.9994 1.7529 5.4427 19 1 11.7806 0.2888 5.5584 20 1 13.3488 2.0091 4.8779 21 1 11.8990 2.3757 6.7870 22 6 3.5346 -0.7321 -0.0101 23 7 2.2891 -1.1327 -0.0075 24 1 -0.3634 -0.0052 1.0276 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5183 27 1 1.9280 2.1193 0.0040 28 1 4.6013 2.1539 -2.0671 29 1 6.2574 2.2052 -1.4169 30 1 5.9174 0.3161 -2.8389 31 1 5.7843 0.0150 1.0573 32 1 7.2802 0.6917 3.1945 33 1 8.3444 0.4227 1.7932 34 1 9.1859 2.7470 1.9851 35 1 8.1219 3.0165 3.3865 36 1 11.3782 4.3512 4.4715 37 1 4.4054 -1.3709 -0.0147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324258274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:21 Heat of formation + Delta-G solvation = -45.358048 kcal Electronic energy + Delta-G solvation = -19853.640683 eV Core-core repulsion = 16631.429787 eV Total energy + Delta-G solvation = -3222.210896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23408 -40.62367 -37.97433 -35.74797 -35.46233 -33.90147 -33.06904 -31.78059 -29.43520 -27.52620 -27.30244 -24.36671 -23.12563 -22.19785 -20.98294 -20.80409 -18.85214 -18.25018 -18.14601 -17.22276 -16.69798 -16.50062 -16.42013 -16.15692 -15.43471 -15.22874 -14.80311 -14.48086 -14.29295 -14.04075 -13.92407 -13.55326 -13.26214 -13.20439 -13.16237 -12.82727 -12.55230 -12.42611 -11.88884 -11.61160 -11.53272 -11.25344 -10.97052 -10.62217 -10.55440 -10.34125 -10.03099 -9.34680 -8.15963 -6.29423 0.94006 1.43422 1.44653 1.58119 1.67956 1.75071 1.82137 2.37546 2.49945 3.16954 3.45697 3.61528 4.00772 4.07376 4.21421 4.26199 4.38506 4.46863 4.52443 4.54585 4.60489 4.63323 4.72263 4.77463 4.93630 5.06004 5.16654 5.51563 5.61561 5.66413 5.67885 5.88819 6.13437 6.21285 6.68085 6.74305 6.89186 6.94179 7.39305 7.41619 8.96813 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033123 B = 0.003458 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.136510 B = 8095.405797 C = 8318.909262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.071 3.929 4 C -0.251 4.251 5 C 0.226 3.774 6 H 0.091 0.909 7 C 0.078 3.922 8 O -0.572 6.572 9 N -0.706 5.706 10 C 0.515 3.485 11 O -0.586 6.586 12 C -0.121 4.121 13 C 0.044 3.956 14 C -0.542 4.542 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.071 3.929 23 N -0.334 5.334 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.206 0.794 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.391 0.609 31 H 0.410 0.590 32 H 0.100 0.900 33 H 0.101 0.899 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.263 0.737 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.767 -8.774 -11.923 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.160 5.160 3 C -0.077 4.077 4 C -0.263 4.263 5 C 0.121 3.879 6 H 0.109 0.891 7 C -0.002 4.002 8 O -0.379 6.379 9 N -0.358 5.358 10 C 0.304 3.696 11 O -0.466 6.466 12 C -0.161 4.161 13 C 0.006 3.994 14 C -0.580 4.580 15 H 0.092 0.908 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.178 1.178 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.114 4.114 23 N -0.156 5.156 24 H 0.102 0.898 25 H 0.134 0.866 26 H 0.109 0.891 27 H 0.223 0.777 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.240 0.760 31 H 0.247 0.753 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.911 -8.978 -11.468 26.310 hybrid contribution 1.614 0.690 0.039 1.756 sum -20.296 -8.289 -11.429 24.724 Atomic orbital electron populations 1.22197 0.71906 1.06007 1.04541 1.48785 1.07942 1.03244 1.56073 1.22751 0.90115 0.94781 1.00036 1.19836 0.93751 0.93995 1.18767 1.19103 0.84416 0.96038 0.88380 0.89101 1.22445 0.98723 0.84699 0.94309 1.86429 1.87832 1.27416 1.36236 1.45914 1.29571 1.11864 1.48437 1.21215 0.82171 0.86395 0.79847 1.90636 1.74855 1.17712 1.63422 1.21636 0.95531 1.00236 0.98688 1.18672 0.93153 0.93107 0.94425 1.21754 1.12757 0.95165 1.28341 0.90836 1.26113 1.00573 0.95158 0.98555 1.70174 1.36207 1.05661 1.45644 0.85289 0.77990 0.79201 0.77860 1.17780 1.20570 1.20614 1.23755 0.95065 0.94693 0.97915 1.77315 1.02219 1.09685 1.26410 0.89787 0.86598 0.89127 0.77698 0.91185 0.95217 0.76028 0.75330 0.88177 0.88109 0.99772 0.99773 0.92869 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.47 127.77 1.47 2.27 16 2 N -0.38 -6.89 4.01 -369.56 -1.48 -8.38 16 3 C 0.07 1.25 11.40 83.54 0.95 2.20 16 4 C -0.25 -5.52 4.84 -20.14 -0.10 -5.61 16 5 C 0.23 5.73 2.80 44.24 0.12 5.85 16 6 H 0.09 2.50 7.57 -2.39 -0.02 2.48 16 7 C 0.08 1.78 6.84 71.98 0.49 2.27 16 8 O -0.57 -11.89 12.53 -148.98 -1.87 -13.75 16 9 N -0.71 -20.44 5.01 -446.09 -2.23 -22.68 16 10 C 0.52 20.23 7.79 87.66 0.68 20.92 16 11 O -0.59 -28.24 15.65 -3.03 -0.05 -28.29 16 12 C -0.12 -5.02 5.64 29.85 0.17 -4.85 16 13 C 0.04 2.49 4.26 29.85 0.13 2.61 16 14 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 15 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 16 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 17 N -0.94 -59.76 13.29 21.44 0.28 -59.48 16 18 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 19 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.07 1.65 10.50 85.24 0.89 2.54 16 23 N -0.33 -8.08 12.58 -57.02 -0.72 -8.79 16 24 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.39 5.02 9.12 -74.05 -0.68 4.35 16 31 H 0.41 10.02 7.63 -92.71 -0.71 9.31 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 34 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 35 H -0.02 -1.03 8.10 -2.39 -0.02 -1.04 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.19 3.86 7.72 -2.91 -0.02 3.84 16 Total: -1.00 -82.80 323.36 1.18 -81.62 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.29 Total: 15.71 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.51 Total: -2.84 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.15 Total: -99.33 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.91 Total: -42.04 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -82.80 1.18 -81.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324258274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.266 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds