Wall clock time and date at job start Mon Mar 30 2020 00:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.07996 * 120.00370 * 120.00152 * 4 2 1 6 6 C 1.37882 * 119.99790 * 299.99770 * 4 2 1 7 7 N 1.31508 * 120.00257 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99622 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46854 * 120.00252 * 8 6 4 11 11 H 1.48500 * 109.46928 * 240.00070 * 8 6 4 12 12 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 13 13 O 1.21284 * 120.00109 * 239.99936 * 12 2 1 14 14 N 1.34777 * 120.00137 * 60.00151 * 12 2 1 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.46847 * 304.99833 * 16 15 14 18 18 O 1.42903 * 109.47256 * 64.99491 * 16 15 14 19 19 C 1.50700 * 109.47081 * 184.99954 * 16 15 14 20 20 C 1.39865 * 126.03638 * 279.68606 * 19 16 15 21 21 N 1.30839 * 108.20095 * 179.81758 * 20 19 16 22 22 N 1.40083 * 108.20216 * 0.44380 * 21 20 19 23 23 C 1.46507 * 126.03442 * 179.73937 * 22 21 20 24 24 C 1.34947 * 107.92580 * 359.71443 * 22 21 20 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 0.97001 * 120.00657 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 31 31 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 32 32 H 0.96702 * 113.99511 * 60.00086 * 18 16 15 33 33 H 1.08002 * 125.90361 * 0.02562 * 20 19 16 34 34 H 1.08998 * 109.46745 * 269.97009 * 23 22 21 35 35 H 1.08996 * 109.47085 * 29.97610 * 23 22 21 36 36 H 1.09004 * 109.46946 * 149.97256 * 23 22 21 37 37 H 1.08006 * 126.12505 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.1464 -2.2871 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5868 4.8160 12 6 2.0322 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 6 1.6841 -0.2197 -4.9000 17 1 0.5978 -0.1415 -4.8560 18 8 2.2539 1.0894 -4.9607 19 6 2.0823 -0.9983 -6.1273 20 6 3.3375 -0.9770 -6.7440 21 7 3.3000 -1.7817 -7.7750 22 7 2.0148 -2.3335 -7.8529 23 6 1.5443 -3.2825 -8.8651 24 6 1.2870 -1.8370 -6.8308 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1608 3.4844 29 1 1.1487 0.5387 -2.5435 30 1 3.2846 -0.9412 -3.6510 31 1 1.8308 -1.9683 -3.6506 32 1 3.2200 1.0962 -5.0020 33 1 4.1913 -0.3989 -6.4226 34 1 1.1271 -2.7350 -9.7102 35 1 2.3794 -3.8947 -9.2052 36 1 0.7762 -3.9237 -8.4326 37 1 0.2546 -2.0681 -6.6130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328182683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:47 Heat of formation + Delta-G solvation = -14.105851 kcal Electronic energy + Delta-G solvation = -19852.915408 eV Core-core repulsion = 16632.059709 eV Total energy + Delta-G solvation = -3220.855699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50200 -38.85308 -37.26655 -33.72355 -33.59813 -33.43838 -31.24378 -30.36757 -28.24528 -26.48702 -25.07908 -23.42716 -21.94460 -21.34420 -20.57115 -19.22479 -17.68354 -16.63250 -16.12016 -15.68303 -15.60768 -15.45650 -14.83945 -14.60496 -14.25799 -14.05711 -13.64696 -13.19929 -13.03383 -12.88524 -12.72729 -12.53237 -11.96543 -11.64847 -11.39542 -10.98563 -10.83602 -10.65947 -10.64081 -10.27076 -10.19381 -9.90985 -9.68087 -8.90670 -8.72276 -8.52118 -8.36377 -8.26385 -5.98526 -4.01298 1.61695 2.24606 2.50479 3.35223 3.42571 3.51193 3.81264 3.93408 4.21928 4.44841 4.52561 4.57688 4.77735 4.80292 5.01060 5.03901 5.07347 5.15211 5.34708 5.50164 5.66219 5.90893 6.11702 6.35093 6.37083 6.68285 6.70092 6.89080 6.99060 7.14969 7.40846 7.54362 7.57470 7.81531 8.04846 8.22062 8.53233 9.08348 9.32347 9.64217 11.09148 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.003439 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.644746 B = 8140.764512 C = 8327.495546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.742 5.742 15 C 0.096 3.904 16 C 0.178 3.822 17 H 0.108 0.892 18 O -0.551 6.551 19 C -0.266 4.266 20 C 0.061 3.939 21 N -0.297 5.297 22 N -0.377 5.377 23 C 0.101 3.899 24 C 0.070 3.930 25 H 0.013 0.987 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.399 0.601 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.375 0.625 33 H 0.183 0.817 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -2.937 -21.261 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.308 3.692 13 O -0.426 6.426 14 N -0.397 5.397 15 C -0.029 4.029 16 C 0.118 3.882 17 H 0.125 0.875 18 O -0.356 6.356 19 C -0.278 4.278 20 C -0.125 4.125 21 N -0.118 5.118 22 N -0.159 5.159 23 C -0.040 4.040 24 C -0.077 4.077 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.234 0.766 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.200 0.800 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.463 -4.004 -22.114 22.521 hybrid contribution 0.076 -0.010 1.334 1.336 sum -1.387 -4.014 -20.780 21.209 Atomic orbital electron populations 1.21736 0.96601 0.99702 1.00956 1.18867 0.94124 0.96875 0.89377 0.92960 1.21207 1.30763 1.12729 0.89056 0.90780 1.24953 0.95184 0.95088 0.99094 1.69880 1.37241 1.23185 1.23357 0.86417 0.78597 0.79800 0.82554 1.19589 1.21078 1.21097 1.21972 0.78451 0.84226 0.84530 1.90528 1.38144 1.27048 1.86858 1.46212 1.55572 1.32699 1.05240 1.21857 0.99502 0.96710 0.84818 1.20256 0.98337 0.81237 0.88419 0.87466 1.86594 1.25508 1.26945 1.96584 1.20667 0.95275 1.08142 1.03724 1.23672 0.97907 0.97629 0.93316 1.77365 0.98314 1.14407 1.21695 1.48503 1.08688 1.35853 1.22871 1.21872 1.00907 0.91157 0.90064 1.22327 0.98540 0.97085 0.89753 0.96839 0.95106 0.88898 0.93068 0.76642 0.91941 0.91541 0.77721 0.79993 0.90714 0.89258 0.89353 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.38 8.37 -34.44 -0.29 -14.67 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.52 11.98 7.15 -10.99 -0.08 11.90 16 13 O -0.55 -14.60 15.46 5.55 0.09 -14.51 16 14 N -0.74 -12.94 5.40 -60.29 -0.33 -13.26 16 15 C 0.10 1.39 5.29 -4.04 -0.02 1.37 16 16 C 0.18 1.98 3.45 -27.88 -0.10 1.88 16 17 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 18 O -0.55 -6.30 13.21 -35.23 -0.47 -6.76 16 19 C -0.27 -2.83 5.12 -105.06 -0.54 -3.37 16 20 C 0.06 0.67 11.44 -17.37 -0.20 0.47 16 21 N -0.30 -3.59 12.58 30.62 0.39 -3.20 16 22 N -0.38 -3.69 4.01 -68.16 -0.27 -3.96 16 23 C 0.10 0.55 11.47 59.85 0.69 1.23 16 24 C 0.07 0.65 11.40 -17.23 -0.20 0.45 16 25 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.40 6.25 7.89 -40.82 -0.32 5.92 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.38 3.22 8.35 45.56 0.38 3.60 16 33 H 0.18 1.50 7.75 -52.49 -0.41 1.09 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -35.58 319.20 -5.27 -40.84 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.35 Total: 5.32 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.74 Total: -1.46 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.41 Total: -45.25 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.38 Total: -21.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.58 -5.27 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328182683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.737 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds