Wall clock time and date at job start Mon Mar 30 2020 00:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.07996 * 120.00370 * 120.00152 * 4 2 1 6 6 C 1.37882 * 119.99790 * 299.99770 * 4 2 1 7 7 N 1.31508 * 120.00257 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99622 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46854 * 120.00252 * 8 6 4 11 11 H 1.48500 * 109.46928 * 240.00070 * 8 6 4 12 12 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 13 13 O 1.21284 * 120.00109 * 239.99936 * 12 2 1 14 14 N 1.34777 * 120.00137 * 60.00151 * 12 2 1 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.46847 * 304.99833 * 16 15 14 18 18 O 1.42903 * 109.47256 * 64.99491 * 16 15 14 19 19 C 1.50700 * 109.47081 * 184.99954 * 16 15 14 20 20 C 1.39865 * 126.03638 * 279.68606 * 19 16 15 21 21 N 1.30839 * 108.20095 * 179.81758 * 20 19 16 22 22 N 1.40083 * 108.20216 * 0.44380 * 21 20 19 23 23 C 1.46507 * 126.03442 * 179.73937 * 22 21 20 24 24 C 1.34947 * 107.92580 * 359.71443 * 22 21 20 25 25 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 0.97001 * 120.00657 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 31 31 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 32 32 H 0.96702 * 113.99511 * 60.00086 * 18 16 15 33 33 H 1.08002 * 125.90361 * 0.02562 * 20 19 16 34 34 H 1.08998 * 109.46745 * 269.97009 * 23 22 21 35 35 H 1.08996 * 109.47085 * 29.97610 * 23 22 21 36 36 H 1.09004 * 109.46946 * 149.97256 * 23 22 21 37 37 H 1.08006 * 126.12505 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.1464 -2.2871 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5868 4.8160 12 6 2.0322 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 6 1.6841 -0.2197 -4.9000 17 1 0.5978 -0.1415 -4.8560 18 8 2.2539 1.0894 -4.9607 19 6 2.0823 -0.9983 -6.1273 20 6 3.3375 -0.9770 -6.7440 21 7 3.3000 -1.7817 -7.7750 22 7 2.0148 -2.3335 -7.8529 23 6 1.5443 -3.2825 -8.8651 24 6 1.2870 -1.8370 -6.8308 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1608 3.4844 29 1 1.1487 0.5387 -2.5435 30 1 3.2846 -0.9412 -3.6510 31 1 1.8308 -1.9683 -3.6506 32 1 3.2200 1.0962 -5.0020 33 1 4.1913 -0.3989 -6.4226 34 1 1.1271 -2.7350 -9.7102 35 1 2.3794 -3.8947 -9.2052 36 1 0.7762 -3.9237 -8.4326 37 1 0.2546 -2.0681 -6.6130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328182683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:47 Heat of formation + Delta-G solvation = -42.431682 kcal Electronic energy + Delta-G solvation = -19854.143708 eV Core-core repulsion = 16632.059709 eV Total energy + Delta-G solvation = -3222.083999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24156 -40.53199 -38.34179 -35.74388 -35.11879 -34.08458 -32.63932 -31.83944 -29.19986 -27.34909 -27.11790 -24.76158 -23.47069 -22.06979 -21.50013 -20.81664 -18.59359 -18.26716 -17.90927 -16.91801 -16.62181 -16.52025 -16.31650 -15.90010 -15.49952 -15.30893 -14.74787 -14.59784 -14.42897 -13.81070 -13.63115 -13.51737 -13.38307 -13.10678 -12.94948 -12.65237 -12.56854 -12.47849 -12.15619 -12.01081 -11.63871 -11.20721 -10.99062 -10.58061 -10.41232 -10.27461 -9.92106 -9.41731 -8.12861 -6.23155 0.90682 1.40531 1.42403 1.55988 1.65741 1.70715 1.98142 2.39892 2.59704 3.16454 3.51136 3.65844 3.95423 3.96926 4.21596 4.27314 4.34359 4.44111 4.44577 4.65459 4.70042 4.78645 4.81180 4.90757 5.00487 5.07356 5.22718 5.53975 5.59169 5.64649 5.78601 5.98286 6.09064 6.25386 6.66373 6.77154 6.82043 6.91321 7.42758 7.59899 8.93087 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.003439 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.644746 B = 8140.764512 C = 8327.495546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.592 6.592 14 N -0.719 5.719 15 C 0.098 3.902 16 C 0.198 3.802 17 H 0.122 0.878 18 O -0.561 6.561 19 C -0.286 4.286 20 C 0.051 3.949 21 N -0.335 5.335 22 N -0.380 5.380 23 C 0.092 3.908 24 C 0.076 3.924 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.386 0.614 33 H 0.197 0.803 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -2.917 -22.271 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.372 5.372 15 C -0.027 4.027 16 C 0.137 3.863 17 H 0.139 0.861 18 O -0.368 6.368 19 C -0.298 4.298 20 C -0.134 4.134 21 N -0.157 5.157 22 N -0.162 5.162 23 C -0.048 4.048 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.214 0.786 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.645 -3.950 -23.178 23.661 hybrid contribution 0.429 -0.015 1.559 1.617 sum -2.216 -3.965 -21.619 22.091 Atomic orbital electron populations 1.21553 0.94957 0.99439 1.01785 1.18806 0.95451 0.95877 0.89678 0.94192 1.21341 1.31472 1.12662 0.91249 0.93457 1.25597 0.95236 0.95764 1.01414 1.69955 1.37265 1.23624 1.24216 0.85551 0.78352 0.78577 0.79443 1.20508 1.20004 1.19863 1.21530 0.78222 0.83627 0.85721 1.90506 1.40176 1.28872 1.87633 1.45911 1.54290 1.32485 1.04549 1.22049 0.99128 0.96644 0.84852 1.20032 0.98768 0.80719 0.86753 0.86081 1.86568 1.26746 1.27026 1.96453 1.20653 0.95662 1.09442 1.04069 1.24023 0.98734 0.97522 0.93145 1.77306 1.00110 1.15572 1.22699 1.48871 1.08027 1.35837 1.23474 1.22216 1.01591 0.91028 0.89982 1.22885 0.99703 0.95736 0.88868 0.92789 0.95775 0.91183 0.92618 0.75221 0.92702 0.92168 0.76415 0.78597 0.89319 0.89342 0.86723 0.77365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.17 2.64 -12.29 -0.03 1.14 16 3 H 0.04 2.11 8.14 -2.39 -0.02 2.10 16 4 C -0.53 -31.07 8.37 25.60 0.21 -30.86 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.55 11.32 21.45 0.24 -51.31 16 8 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.52 24.05 7.15 87.66 0.63 24.68 16 13 O -0.59 -32.05 15.46 -3.04 -0.05 -32.09 16 14 N -0.72 -24.12 5.40 -463.04 -2.50 -26.62 16 15 C 0.10 2.69 5.29 86.38 0.46 3.15 16 16 C 0.20 3.96 3.45 29.85 0.10 4.07 16 17 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 18 O -0.56 -11.65 13.21 -148.98 -1.97 -13.62 16 19 C -0.29 -5.55 5.12 -20.15 -0.10 -5.66 16 20 C 0.05 1.07 11.44 85.23 0.97 2.04 16 21 N -0.34 -7.81 12.58 -57.02 -0.72 -8.53 16 22 N -0.38 -6.72 4.01 -369.55 -1.48 -8.20 16 23 C 0.09 0.78 11.47 127.77 1.47 2.25 16 24 C 0.08 1.22 11.40 83.54 0.95 2.17 16 25 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 28 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.41 11.93 7.89 -92.71 -0.73 11.20 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.39 6.03 8.35 -74.06 -0.62 5.41 16 33 H 0.20 3.11 7.75 -2.91 -0.02 3.09 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -77.33 319.20 1.05 -76.28 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.25 Total: 17.01 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.75 Total: -0.30 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -4.46 Total: -94.66 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -2.01 Total: -45.71 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.33 1.05 -76.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328182683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.848 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds