Wall clock time and date at job start Mon Mar 30 2020 00:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45192 * 109.47480 * 2 1 4 4 C 1.34730 * 117.00036 * 180.02562 * 3 2 1 5 5 O 1.21484 * 120.00339 * 359.97438 * 4 3 2 6 6 C 1.47589 * 119.99924 * 179.97438 * 4 3 2 7 7 C 1.41547 * 126.52341 * 179.70824 * 6 4 3 8 8 C 1.35342 * 105.50134 * 179.84204 * 7 6 4 9 9 C 1.50698 * 126.38237 * 180.10168 * 8 7 6 10 10 N 1.46498 * 109.47654 * 265.34755 * 9 8 7 11 11 C 1.36937 * 119.99852 * 89.99573 * 10 9 8 12 12 H 1.08004 * 119.99537 * 214.14600 * 11 10 9 13 13 C 1.38807 * 120.00277 * 34.14940 * 11 10 9 14 14 N 1.31622 * 119.99845 * 23.40182 * 13 11 10 15 15 Si 1.86803 * 120.00115 * 203.39595 * 13 11 10 16 16 H 1.48500 * 109.46891 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46721 * 119.99903 * 15 13 11 18 18 H 1.48490 * 109.47267 * 240.00292 * 15 13 11 19 19 C 1.46495 * 119.99850 * 269.99987 * 10 9 8 20 20 C 1.52996 * 109.47317 * 95.21217 * 19 10 9 21 21 N 1.35054 * 107.24278 * 0.41518 * 8 7 6 22 22 H 0.96993 * 124.88002 * 179.74467 * 21 8 7 23 23 N 1.28470 * 110.23708 * 359.72497 * 21 8 7 24 24 H 1.08997 * 109.47804 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47380 * 300.00411 * 1 2 3 26 26 H 1.09004 * 109.47284 * 59.99962 * 1 2 3 27 27 H 1.09006 * 109.47008 * 239.99207 * 2 1 3 28 28 H 1.09006 * 109.46913 * 120.00422 * 2 1 3 29 29 H 1.08000 * 127.24588 * 359.97438 * 7 6 4 30 30 H 1.08999 * 109.46847 * 25.34535 * 9 8 7 31 31 H 1.08999 * 109.47044 * 145.34362 * 9 8 7 32 32 H 0.96994 * 119.99450 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.47358 * 215.21495 * 19 10 9 34 34 H 1.09002 * 109.47581 * 335.21141 * 19 10 9 35 35 H 1.08993 * 109.47549 * 299.99849 * 20 19 10 36 36 H 1.09001 * 109.47070 * 60.00418 * 20 19 10 37 37 H 1.09008 * 109.47087 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3497 1.5453 -0.0005 5 8 4.0897 0.5819 -0.0005 6 6 3.9139 2.9091 -0.0011 7 6 5.2870 3.2527 0.0040 8 6 5.3213 4.6057 -0.0024 9 6 6.5568 5.4686 -0.0026 10 7 6.8886 5.8468 1.3732 11 6 7.7201 5.0549 2.1194 12 1 7.5646 4.9610 3.1840 13 6 8.7629 4.3730 1.5075 14 7 9.2507 4.8055 0.3640 15 14 9.4739 2.8417 2.3068 16 1 8.7551 2.5672 3.5769 17 1 9.3154 1.6852 1.3889 18 1 10.9159 3.0552 2.5898 19 6 6.3309 7.0721 1.9508 20 6 5.0656 6.7332 2.7415 21 7 4.0420 5.0386 -0.0016 22 1 3.7717 5.9701 -0.0019 23 7 3.2347 4.0393 -0.0009 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 6.1298 2.5774 0.0096 30 1 7.3878 4.9130 -0.4372 31 1 6.3725 6.3668 -0.5920 32 1 9.9791 4.3288 -0.0637 33 1 7.0645 7.5267 2.6166 34 1 6.0835 7.7708 1.1515 35 1 4.3320 6.2788 2.0758 36 1 5.3130 6.0347 3.5409 37 1 4.6509 7.6450 3.1716 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332436095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:43 Heat of formation + Delta-G solvation = 3.760968 kcal Electronic energy + Delta-G solvation = -20534.147790 eV Core-core repulsion = 17314.066854 eV Total energy + Delta-G solvation = -3220.080935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12461 -39.88537 -36.35127 -36.14099 -32.13042 -31.95029 -31.18452 -31.11878 -28.73094 -25.78560 -24.87039 -23.62114 -22.61356 -20.97670 -20.30055 -20.08782 -17.52029 -17.21187 -16.45839 -16.25408 -15.95810 -15.04178 -14.97462 -13.97497 -13.81753 -13.69540 -13.42613 -13.10719 -12.96449 -12.68323 -12.52231 -12.02020 -11.93641 -11.62652 -11.33022 -11.18675 -10.79872 -10.75788 -10.55652 -10.46921 -10.46045 -10.12475 -10.06274 -9.98629 -8.95399 -8.61321 -8.29799 -6.82535 -5.94556 -3.47325 1.70755 2.70214 2.73717 3.34854 3.45382 3.48512 3.49095 3.60332 4.42904 4.78407 4.87729 4.94863 5.18888 5.21071 5.35917 5.40799 5.61479 5.69487 5.73708 5.82826 5.87838 6.09285 6.16258 6.22298 6.33094 6.40393 6.52925 6.73605 6.76106 6.95485 6.95786 7.29041 7.55347 7.73719 7.97731 8.34775 8.41525 9.01880 9.65373 10.18724 11.08100 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.005837 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.386279 B = 4795.432869 C = 5702.879508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.347 6.347 4 C 0.560 3.440 5 O -0.504 6.504 6 C -0.016 4.016 7 C -0.169 4.169 8 C 0.038 3.962 9 C 0.196 3.804 10 N -0.574 5.574 11 C -0.260 4.260 12 H 0.064 0.936 13 C 0.017 3.983 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.289 1.289 19 C 0.138 3.862 20 C -0.169 4.169 21 N -0.377 5.377 22 H 0.439 0.561 23 N -0.255 5.255 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.129 0.871 31 H 0.042 0.958 32 H 0.258 0.742 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.052 0.948 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 -1.820 -2.110 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.263 6.263 4 C 0.403 3.597 5 O -0.390 6.390 6 C -0.173 4.173 7 C -0.198 4.198 8 C -0.089 4.089 9 C 0.067 3.933 10 N -0.294 5.294 11 C -0.389 4.389 12 H 0.081 0.919 13 C -0.184 4.184 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.216 1.216 19 C 0.012 3.988 20 C -0.228 4.228 21 N -0.093 5.093 22 H 0.283 0.717 23 N -0.093 5.093 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.175 0.825 30 H 0.146 0.854 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.538 -1.840 -2.187 13.836 hybrid contribution 0.924 -0.911 0.505 1.393 sum -12.614 -2.751 -1.682 13.020 Atomic orbital electron populations 1.21785 0.92756 1.02657 1.03572 1.23012 0.95252 0.80531 1.02585 1.86645 1.23783 1.31662 1.84228 1.19695 0.80181 0.87611 0.72207 1.90840 1.60574 1.41199 1.46351 1.20596 0.92526 0.89574 1.14637 1.21400 0.94727 0.94456 1.09189 1.23526 0.88033 0.95936 1.01419 1.19880 0.90494 0.95104 0.87855 1.43809 1.52106 1.21998 1.11456 1.19034 1.05483 1.22021 0.92365 0.91866 1.25048 0.95512 1.00226 0.97593 1.69936 1.25441 1.38252 1.19158 0.86372 0.78379 0.83566 0.79428 1.20014 1.20889 1.21575 1.20936 0.93574 0.88592 0.95736 1.22367 0.99587 0.99950 1.00931 1.43493 1.04521 1.08333 1.52939 0.71651 1.73498 1.22194 0.94588 1.19014 0.90411 0.91480 0.91501 0.91262 0.91243 0.82511 0.85440 0.93958 0.93208 0.93051 0.94575 0.94349 0.92932 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.15 0.38 -0.95 16 2 C 0.06 0.74 6.19 37.15 0.23 0.97 16 3 O -0.35 -5.65 10.23 -40.57 -0.42 -6.06 16 4 C 0.56 10.61 7.97 34.55 0.28 10.89 16 5 O -0.50 -10.38 16.72 -19.25 -0.32 -10.70 16 6 C -0.02 -0.31 7.17 -82.78 -0.59 -0.90 16 7 C -0.17 -3.55 10.73 -39.35 -0.42 -3.98 16 8 C 0.04 0.75 6.70 -82.21 -0.55 0.20 16 9 C 0.20 4.13 5.89 -5.20 -0.03 4.10 16 10 N -0.57 -13.04 2.44 -174.62 -0.43 -13.47 16 11 C -0.26 -6.71 9.48 -15.06 -0.14 -6.85 16 12 H 0.06 1.67 7.93 -52.48 -0.42 1.26 16 13 C 0.02 0.43 4.94 -17.43 -0.09 0.35 16 14 N -0.89 -23.80 11.35 55.49 0.63 -23.17 16 15 Si 0.89 21.19 29.61 -169.99 -5.03 16.16 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.14 2.62 6.44 -4.05 -0.03 2.59 16 20 C -0.17 -2.87 10.21 37.16 0.38 -2.49 16 21 N -0.38 -6.35 5.77 33.50 0.19 -6.16 16 22 H 0.44 5.91 8.47 -190.45 -1.61 4.30 16 23 N -0.25 -4.68 12.24 33.41 0.41 -4.27 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.16 3.45 8.06 -52.49 -0.42 3.03 16 30 H 0.13 3.09 5.34 -51.93 -0.28 2.82 16 31 H 0.04 0.79 7.86 -51.93 -0.41 0.39 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.04 0.61 7.83 -51.93 -0.41 0.20 16 35 H 0.04 0.63 6.38 -51.93 -0.33 0.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -29.62 320.94 -7.10 -36.72 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.39 Total: 2.20 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.58 Total: 3.92 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.81 Total: -47.07 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.74 Total: -16.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.62 -7.10 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332436095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.480 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds