Wall clock time and date at job start Mon Mar 30 2020 01:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36263 * 117.00008 * 2 1 4 4 C 1.35461 * 126.07463 * 359.97438 * 3 2 1 5 5 N 1.35945 * 107.68754 * 180.02562 * 4 3 2 6 6 H 0.96996 * 126.02612 * 179.97438 * 5 4 3 7 7 N 1.40080 * 107.95523 * 359.78442 * 5 4 3 8 8 C 1.31212 * 108.28071 * 0.36018 * 7 5 4 9 9 N 1.40245 * 125.88895 * 179.90864 * 8 7 5 10 10 C 1.34773 * 119.99766 * 359.68811 * 9 8 7 11 11 O 1.21297 * 120.00195 * 359.72839 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46808 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46847 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99722 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47233 * 59.99840 * 20 18 16 22 22 H 1.48492 * 109.47488 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46997 * 300.00237 * 20 18 16 24 24 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.47192 * 300.00258 * 1 2 3 26 26 H 1.08997 * 109.47228 * 59.99668 * 1 2 3 27 27 H 1.08003 * 126.15608 * 0.05289 * 4 3 2 28 28 H 0.96998 * 119.99708 * 179.69468 * 9 8 7 29 29 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 30 30 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 31 31 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 32 32 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 33 33 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 34 34 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 35 35 H 1.08996 * 109.46961 * 299.99496 * 15 14 13 36 36 H 1.08994 * 109.47402 * 59.99882 * 15 14 13 37 37 H 0.96999 * 120.00128 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0476 1.2141 0.0000 4 6 1.4342 2.4219 -0.0005 5 7 2.4019 3.3766 -0.0009 6 1 2.2571 4.3357 -0.0016 7 7 3.6452 2.7313 0.0044 8 6 3.4366 1.4359 0.0000 9 7 4.4276 0.4435 0.0012 10 6 5.7296 0.7915 0.0010 11 8 6.0443 1.9629 -0.0053 12 6 6.7946 -0.2748 0.0017 13 6 8.1756 0.3836 -0.0057 14 6 9.2567 -0.6990 -0.0043 15 6 10.6378 -0.0405 -0.0110 16 6 11.7027 -1.1069 -0.0103 17 1 11.4224 -2.1499 -0.0051 18 6 13.0347 -0.7510 -0.0163 19 7 13.3759 0.5191 -0.0231 20 14 14.3547 -2.0727 -0.0161 21 1 14.2049 -2.9220 -1.2250 22 1 15.6951 -1.4337 -0.0238 23 1 14.2134 -2.9132 1.1999 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.3681 2.5951 -0.0001 28 1 4.1758 -0.4932 0.0021 29 1 6.6906 -0.8914 0.8945 30 1 6.6847 -0.8986 -0.8854 31 1 8.2794 1.0002 -0.8985 32 1 8.2854 1.0073 0.8815 33 1 9.1528 -1.3152 0.8888 34 1 9.1470 -1.3231 -0.8911 35 1 10.7421 0.5759 -0.9039 36 1 10.7472 0.5833 0.8760 37 1 14.3130 0.7695 -0.0269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333370217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:18 Heat of formation + Delta-G solvation = -8.703327 kcal Electronic energy + Delta-G solvation = -19180.994540 eV Core-core repulsion = 15960.373112 eV Total energy + Delta-G solvation = -3220.621428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67992 -39.51261 -38.23301 -35.12825 -34.63728 -32.59617 -30.84081 -29.65299 -29.42345 -27.47797 -25.77825 -23.33121 -21.82342 -20.96164 -19.92548 -19.86497 -19.07542 -16.69994 -16.61705 -16.32457 -16.32372 -16.04953 -15.62002 -15.04700 -14.56991 -14.42772 -13.82984 -13.80054 -13.43342 -12.57570 -12.26623 -11.98227 -11.66880 -11.66074 -11.56162 -11.10425 -11.05774 -10.92325 -10.50193 -10.48006 -10.36466 -9.77923 -9.55722 -9.18547 -8.96292 -8.95277 -8.26089 -8.08805 -5.90971 -3.93480 1.52952 2.22066 2.26518 2.84048 3.07986 3.38500 3.40769 3.42719 3.45088 4.37664 4.51876 4.57209 4.73413 4.81855 5.01563 5.06144 5.11939 5.35346 5.40517 5.44330 5.59877 5.89204 6.18582 6.31844 6.35676 6.59492 6.82352 6.89025 6.96545 7.07661 7.19609 7.25720 7.64985 7.78593 7.95251 8.10772 8.23980 8.52278 9.14163 9.69898 11.20350 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050835 B = 0.002656 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.669835 B =10541.203138 C =11055.509807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C -0.043 4.043 4 C -0.010 4.010 5 N -0.471 5.471 6 H 0.447 0.553 7 N -0.247 5.247 8 C 0.302 3.698 9 N -0.642 5.642 10 C 0.504 3.496 11 O -0.488 6.488 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.179 0.821 28 H 0.422 0.578 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.291 0.334 0.064 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C -0.100 4.100 4 C -0.155 4.155 5 N -0.188 5.188 6 H 0.293 0.707 7 N -0.079 5.079 8 C 0.044 3.956 9 N -0.295 5.295 10 C 0.291 3.709 11 O -0.356 6.356 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.196 0.804 28 H 0.260 0.740 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.879 1.931 0.062 28.944 hybrid contribution -0.488 -1.164 0.001 1.262 sum -29.367 0.767 0.063 29.377 Atomic orbital electron populations 1.22964 0.78545 1.03851 1.00838 1.86026 1.20730 1.23665 1.91350 1.18374 0.90114 0.85562 1.15952 1.22227 0.96109 0.88274 1.08892 1.45751 1.02729 1.08557 1.61746 0.70724 1.78062 1.00567 1.03119 1.26126 1.18929 0.85771 0.88953 1.01972 1.43279 1.04067 1.08090 1.74066 1.21465 0.82309 0.91622 0.75514 1.90804 1.80767 1.19473 1.44590 1.21796 0.94190 0.96904 1.04450 1.21482 0.90767 0.98851 1.03144 1.21647 0.96244 0.96720 1.00148 1.19096 0.89462 0.95849 0.97341 1.21252 0.91121 0.93046 1.50435 0.92791 1.25043 0.98801 0.95249 0.95501 1.69967 1.17135 1.15504 1.50904 0.86669 0.80924 0.81913 0.78533 1.20298 1.21358 1.20292 0.88347 0.93157 0.93149 0.80382 0.74012 0.88676 0.88671 0.91658 0.91660 0.93396 0.93393 0.96572 0.96571 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.12 101.05 1.02 1.18 16 2 O -0.31 -2.76 10.59 -20.58 -0.22 -2.98 16 3 C -0.04 -0.46 7.03 -39.66 -0.28 -0.73 16 4 C -0.01 -0.08 11.06 -16.72 -0.18 -0.26 16 5 N -0.47 -4.52 7.40 30.66 0.23 -4.29 16 6 H 0.45 2.71 8.96 -182.62 -1.64 1.07 16 7 N -0.25 -3.66 10.91 31.51 0.34 -3.32 16 8 C 0.30 4.10 7.83 -154.21 -1.21 2.89 16 9 N -0.64 -8.05 5.45 -11.04 -0.06 -8.11 16 10 C 0.50 7.70 7.80 -10.98 -0.09 7.61 16 11 O -0.49 -9.61 14.70 5.54 0.08 -9.53 16 12 C -0.13 -1.81 5.70 -27.88 -0.16 -1.97 16 13 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 14 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.18 8.08 -51.92 -0.42 -0.24 16 26 H 0.05 0.18 8.08 -51.93 -0.42 -0.24 16 27 H 0.18 0.63 7.62 -52.48 -0.40 0.23 16 28 H 0.42 3.84 8.82 -40.82 -0.36 3.48 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -37.96 322.74 -7.33 -45.29 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.58 Total: -2.58 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.70 Total: -9.31 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.25 Total: -42.87 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.14 Total: -12.51 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.96 -7.33 -45.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333370217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.584 kcal (2) G-P(sol) polarization free energy of solvation -37.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds