Wall clock time and date at job start Mon Mar 30 2020 00:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46858 * 2 1 4 4 C 1.50702 * 109.46685 * 240.00148 * 2 1 3 5 5 H 1.07996 * 119.99559 * 245.45633 * 4 2 1 6 6 C 1.37870 * 120.00170 * 65.46032 * 4 2 1 7 7 N 1.31518 * 120.00102 * 9.55389 * 6 4 2 8 8 Si 1.86796 * 120.00187 * 189.54730 * 6 4 2 9 9 H 1.48501 * 109.46950 * 84.99589 * 8 6 4 10 10 H 1.48496 * 109.47442 * 204.99694 * 8 6 4 11 11 H 1.48507 * 109.47224 * 324.99706 * 8 6 4 12 12 N 1.46900 * 109.46956 * 120.00167 * 2 1 3 13 13 C 1.46905 * 110.99959 * 274.99845 * 12 2 1 14 14 C 1.50691 * 109.47107 * 180.02562 * 13 12 2 15 15 C 1.35023 * 120.16112 * 115.00061 * 14 13 12 16 16 C 1.41569 * 119.12160 * 179.97438 * 15 14 13 17 17 O 1.21778 * 120.31089 * 179.72527 * 16 15 14 18 18 N 1.34847 * 119.38263 * 359.97438 * 16 15 14 19 19 C 1.46498 * 119.86873 * 180.02562 * 18 16 15 20 20 C 1.34603 * 120.26057 * 359.97438 * 18 16 15 21 21 O 1.21590 * 119.52896 * 180.02562 * 20 18 16 22 22 N 1.34542 * 120.93022 * 0.04472 * 20 18 16 23 23 C 1.46506 * 119.68579 * 179.97438 * 22 20 18 24 24 H 1.09006 * 109.47077 * 303.69151 * 1 2 3 25 25 H 1.09004 * 109.47478 * 63.69326 * 1 2 3 26 26 H 1.09005 * 109.47254 * 183.69336 * 1 2 3 27 27 H 0.96996 * 120.00056 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00074 * 38.95371 * 12 2 1 29 29 H 1.09000 * 109.46943 * 59.99981 * 13 12 2 30 30 H 1.09000 * 109.46985 * 300.00634 * 13 12 2 31 31 H 1.07998 * 120.43901 * 359.97438 * 15 14 13 32 32 H 1.09001 * 109.46764 * 359.97438 * 19 18 16 33 33 H 1.08996 * 109.46714 * 120.00415 * 19 18 16 34 34 H 1.08998 * 109.47158 * 239.99895 * 19 18 16 35 35 H 1.09003 * 109.46649 * 269.97698 * 23 22 20 36 36 H 1.09004 * 109.46970 * 29.97410 * 23 22 20 37 37 H 1.08995 * 109.46920 * 149.97769 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1760 -1.1779 -4.0102 9 1 1.0241 -2.0609 -4.3241 10 1 2.4227 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 3.7736 -0.1885 4.1103 16 6 4.2276 -0.9018 5.2458 17 8 5.2955 -0.6229 5.7603 18 7 3.4688 -1.8963 5.7493 19 6 3.9280 -2.6410 6.9243 20 6 2.2906 -2.2068 5.1772 21 8 1.6169 -3.1057 5.6425 22 7 1.8482 -1.5368 4.0976 23 6 0.5620 -1.8979 3.4963 24 1 -0.3633 0.5701 0.8551 25 1 -0.3634 0.4554 -0.9212 26 1 -0.3634 -1.0256 0.0662 27 1 1.1315 1.4105 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 4.3674 0.6113 3.6932 32 1 4.8939 -2.2520 7.2463 33 1 3.2036 -2.5294 7.7311 34 1 4.0282 -3.6960 6.6695 35 1 0.7188 -2.6609 2.7339 36 1 -0.1033 -2.2862 4.2675 37 1 0.1136 -1.0153 3.0403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333384227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:35 Heat of formation + Delta-G solvation = -28.803793 kcal Electronic energy + Delta-G solvation = -20694.176729 eV Core-core repulsion = 17472.683679 eV Total energy + Delta-G solvation = -3221.493049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.36281 -39.05952 -38.12202 -35.80786 -35.21237 -32.82282 -32.05182 -29.79645 -27.71510 -27.01957 -25.43662 -24.86639 -23.37746 -22.14671 -20.53454 -19.05744 -17.79750 -17.19232 -17.02659 -16.30797 -15.55549 -15.17652 -14.90062 -14.76989 -14.72115 -13.90705 -13.75130 -13.55515 -13.05727 -13.01408 -12.67998 -12.42149 -12.28820 -12.06054 -11.87920 -11.34084 -11.05485 -11.02374 -10.90635 -10.63091 -10.39369 -10.24980 -9.97267 -9.83647 -9.25309 -8.51128 -8.46070 -7.64482 -6.13956 -4.14261 1.01571 1.87389 1.96206 2.96302 3.26455 3.33586 3.36905 3.45279 4.19621 4.36412 4.55897 4.94536 4.97668 5.06092 5.16354 5.20083 5.22744 5.30554 5.41148 5.52624 5.54479 5.57823 5.73212 5.85840 6.09430 6.37734 6.46106 6.51175 6.75575 7.00167 7.18258 7.36611 7.46608 7.69799 7.88615 7.97087 8.16275 8.35351 8.91413 9.50269 10.95218 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004419 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.547999 B = 6334.743307 C = 6586.858221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.210 3.790 3 H 0.047 0.953 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.084 3.916 14 C 0.222 3.778 15 C -0.298 4.298 16 C 0.551 3.449 17 O -0.526 6.526 18 N -0.559 5.559 19 C 0.081 3.919 20 C 0.695 3.305 21 O -0.545 6.545 22 N -0.528 5.528 23 C 0.071 3.929 24 H 0.011 0.989 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.326 0.674 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -2.947 13.627 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.045 4.045 14 C 0.116 3.884 15 C -0.325 4.325 16 C 0.349 3.651 17 O -0.402 6.402 18 N -0.304 5.304 19 C -0.060 4.060 20 C 0.398 3.602 21 O -0.419 6.419 22 N -0.248 5.248 23 C -0.071 4.071 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.189 0.811 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.432 -3.169 13.892 14.255 hybrid contribution -0.845 -0.356 -0.793 1.212 sum -1.277 -3.526 13.098 13.624 Atomic orbital electron populations 1.22432 1.00756 0.98709 1.00668 1.19285 0.89314 0.95298 0.85808 0.93498 1.21015 1.35187 1.08458 0.89418 0.91849 1.24917 0.95376 0.94718 0.99059 1.69945 1.45294 1.13953 1.23996 0.86558 0.78768 0.80007 0.82380 1.20672 1.21366 1.19857 1.61073 1.58882 1.08605 1.02458 1.21298 1.00500 0.95774 0.86977 1.21214 0.90026 0.84928 0.92251 1.21652 0.99053 1.09922 1.01887 1.17392 0.84307 0.78954 0.84446 1.90839 1.21417 1.66359 1.61613 1.46356 1.19002 1.34521 1.30472 1.21843 1.02000 0.96588 0.85599 1.15808 0.81612 0.82471 0.80293 1.90989 1.56126 1.31055 1.63768 1.44611 1.21723 1.31583 1.26859 1.22233 0.81979 1.02996 0.99849 0.97019 0.90551 0.94948 0.92852 0.85515 0.93121 0.87474 0.81088 0.88114 0.90641 0.90558 0.89753 0.88628 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.04 37.16 0.34 -3.02 16 2 C 0.21 4.59 2.44 -68.86 -0.17 4.42 16 3 H 0.05 1.14 7.74 -51.93 -0.40 0.74 16 4 C -0.50 -12.79 8.76 -34.44 -0.30 -13.09 16 5 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 6 C 0.06 1.59 5.17 -17.82 -0.09 1.50 16 7 N -0.89 -24.06 12.16 55.43 0.67 -23.39 16 8 Si 0.89 20.43 29.55 -169.99 -5.02 15.41 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.68 -12.06 6.22 -109.22 -0.68 -12.74 16 13 C 0.08 1.19 4.92 -4.98 -0.02 1.16 16 14 C 0.22 2.96 6.27 -81.51 -0.51 2.45 16 15 C -0.30 -4.12 9.61 -39.46 -0.38 -4.49 16 16 C 0.55 8.32 7.45 -14.96 -0.11 8.20 16 17 O -0.53 -9.07 16.44 5.12 0.08 -8.98 16 18 N -0.56 -7.76 2.96 -131.50 -0.39 -8.15 16 19 C 0.08 0.89 10.00 59.85 0.60 1.49 16 20 C 0.69 9.99 8.12 -87.28 -0.71 9.28 16 21 O -0.55 -8.63 15.79 5.29 0.08 -8.55 16 22 N -0.53 -6.89 3.01 -124.33 -0.37 -7.27 16 23 C 0.07 0.77 8.67 59.85 0.52 1.29 16 24 H 0.01 0.19 7.55 -51.93 -0.39 -0.20 16 25 H 0.08 1.77 6.83 -51.93 -0.35 1.42 16 26 H 0.03 0.60 8.07 -51.93 -0.42 0.19 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.33 5.34 5.53 -39.29 -0.22 5.12 16 29 H 0.05 0.65 6.52 -51.93 -0.34 0.31 16 30 H 0.11 1.50 7.78 -51.93 -0.40 1.09 16 31 H 0.17 2.16 7.93 -52.49 -0.42 1.74 16 32 H 0.10 1.07 6.90 -51.93 -0.36 0.71 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.91 7.20 -51.93 -0.37 0.54 16 36 H 0.10 0.96 7.37 -51.93 -0.38 0.58 16 37 H 0.09 0.91 6.20 -51.93 -0.32 0.59 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -30.02 305.96 -6.63 -36.65 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.77 Total: 3.20 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.84 Total: 9.20 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.77 Total: -51.55 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.17 Total: -17.53 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.02 -6.63 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333384227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.849 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds