Wall clock time and date at job start Mon Mar 30 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46858 * 2 1 4 4 C 1.50702 * 109.46685 * 240.00148 * 2 1 3 5 5 H 1.07996 * 119.99559 * 245.45633 * 4 2 1 6 6 C 1.37870 * 120.00170 * 65.46032 * 4 2 1 7 7 N 1.31518 * 120.00102 * 9.55389 * 6 4 2 8 8 Si 1.86796 * 120.00187 * 189.54730 * 6 4 2 9 9 H 1.48501 * 109.46950 * 84.99589 * 8 6 4 10 10 H 1.48496 * 109.47442 * 204.99694 * 8 6 4 11 11 H 1.48507 * 109.47224 * 324.99706 * 8 6 4 12 12 N 1.46900 * 109.46956 * 120.00167 * 2 1 3 13 13 C 1.46905 * 110.99959 * 274.99845 * 12 2 1 14 14 C 1.50691 * 109.47107 * 180.02562 * 13 12 2 15 15 C 1.35023 * 120.16112 * 115.00061 * 14 13 12 16 16 C 1.41569 * 119.12160 * 179.97438 * 15 14 13 17 17 O 1.21778 * 120.31089 * 179.72527 * 16 15 14 18 18 N 1.34847 * 119.38263 * 359.97438 * 16 15 14 19 19 C 1.46498 * 119.86873 * 180.02562 * 18 16 15 20 20 C 1.34603 * 120.26057 * 359.97438 * 18 16 15 21 21 O 1.21590 * 119.52896 * 180.02562 * 20 18 16 22 22 N 1.34542 * 120.93022 * 0.04472 * 20 18 16 23 23 C 1.46506 * 119.68579 * 179.97438 * 22 20 18 24 24 H 1.09006 * 109.47077 * 303.69151 * 1 2 3 25 25 H 1.09004 * 109.47478 * 63.69326 * 1 2 3 26 26 H 1.09005 * 109.47254 * 183.69336 * 1 2 3 27 27 H 0.96996 * 120.00056 * 180.02562 * 7 6 4 28 28 H 1.00898 * 111.00074 * 38.95371 * 12 2 1 29 29 H 1.09000 * 109.46943 * 59.99981 * 13 12 2 30 30 H 1.09000 * 109.46985 * 300.00634 * 13 12 2 31 31 H 1.07998 * 120.43901 * 359.97438 * 15 14 13 32 32 H 1.09001 * 109.46764 * 359.97438 * 19 18 16 33 33 H 1.08996 * 109.46714 * 120.00415 * 19 18 16 34 34 H 1.08998 * 109.47158 * 239.99895 * 19 18 16 35 35 H 1.09003 * 109.46649 * 269.97698 * 23 22 20 36 36 H 1.09004 * 109.46970 * 29.97410 * 23 22 20 37 37 H 1.08995 * 109.46920 * 149.97769 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1760 -1.1779 -4.0102 9 1 1.0241 -2.0609 -4.3241 10 1 2.4227 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 3.7736 -0.1885 4.1103 16 6 4.2276 -0.9018 5.2458 17 8 5.2955 -0.6229 5.7603 18 7 3.4688 -1.8963 5.7493 19 6 3.9280 -2.6410 6.9243 20 6 2.2906 -2.2068 5.1772 21 8 1.6169 -3.1057 5.6425 22 7 1.8482 -1.5368 4.0976 23 6 0.5620 -1.8979 3.4963 24 1 -0.3633 0.5701 0.8551 25 1 -0.3634 0.4554 -0.9212 26 1 -0.3634 -1.0256 0.0662 27 1 1.1315 1.4105 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 4.3674 0.6113 3.6932 32 1 4.8939 -2.2520 7.2463 33 1 3.2036 -2.5294 7.7311 34 1 4.0282 -3.6960 6.6695 35 1 0.7188 -2.6609 2.7339 36 1 -0.1033 -2.2862 4.2675 37 1 0.1136 -1.0153 3.0403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333384227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:34 Heat of formation + Delta-G solvation = -48.899746 kcal Electronic energy + Delta-G solvation = -20695.048155 eV Core-core repulsion = 17472.683679 eV Total energy + Delta-G solvation = -3222.364475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.46893 -40.22347 -39.31184 -37.28325 -36.36074 -34.49545 -33.25808 -31.21710 -28.91581 -28.01856 -27.16860 -26.22056 -24.47440 -23.29042 -22.22006 -20.18296 -18.82138 -18.56477 -18.28576 -17.79167 -16.77337 -16.62282 -16.31056 -16.07796 -15.82764 -15.34833 -14.89947 -14.70147 -14.47034 -14.07802 -13.95537 -13.65104 -13.37954 -13.31525 -13.22178 -12.84147 -12.76724 -12.54135 -12.25808 -12.11614 -12.04294 -11.77890 -11.42217 -11.04809 -10.92114 -10.41868 -9.62436 -9.07113 -8.10043 -6.15300 -0.10815 0.80808 0.85575 1.45295 1.48164 1.55920 1.89309 2.32052 2.47513 3.06124 3.21891 3.54263 3.72556 3.91824 4.04756 4.30735 4.31073 4.38331 4.40883 4.55855 4.60712 4.68585 4.70229 4.75460 4.81564 4.91777 5.03440 5.06591 5.39125 5.40512 5.72166 5.77294 6.08034 6.21733 6.33335 6.58406 6.72641 6.76306 6.96366 7.52721 8.97437 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.004419 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.547999 B = 6334.743307 C = 6586.858221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.021 0.979 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.089 3.911 14 C 0.232 3.768 15 C -0.302 4.302 16 C 0.548 3.452 17 O -0.553 6.553 18 N -0.560 5.560 19 C 0.076 3.924 20 C 0.692 3.308 21 O -0.560 6.560 22 N -0.524 5.524 23 C 0.065 3.935 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.261 0.739 28 H 0.336 0.664 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.180 0.820 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -3.480 14.157 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.038 0.962 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.040 4.040 14 C 0.126 3.874 15 C -0.329 4.329 16 C 0.347 3.653 17 O -0.432 6.432 18 N -0.303 5.303 19 C -0.064 4.064 20 C 0.396 3.604 21 O -0.436 6.436 22 N -0.244 5.244 23 C -0.075 4.075 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.198 0.802 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.075 -3.725 14.435 14.947 hybrid contribution -0.648 -0.212 -0.897 1.126 sum -1.723 -3.937 13.538 14.204 Atomic orbital electron populations 1.22241 0.99302 0.99645 1.00279 1.18994 0.90262 0.93601 0.86369 0.96150 1.21368 1.34718 1.08138 0.91155 0.92945 1.25540 0.95636 0.95468 1.01472 1.70037 1.46474 1.15025 1.24285 0.85736 0.78533 0.78747 0.79570 1.20085 1.21473 1.19940 1.60815 1.59086 1.09364 1.02661 1.21269 1.01890 0.95124 0.85724 1.21034 0.89744 0.84803 0.91844 1.21763 0.99304 1.10188 1.01670 1.17550 0.84042 0.79117 0.84565 1.90826 1.22569 1.67317 1.62531 1.46462 1.18717 1.34260 1.30899 1.22040 1.02468 0.96777 0.85156 1.15893 0.81578 0.82438 0.80515 1.90981 1.56536 1.31762 1.64317 1.44737 1.22221 1.31029 1.26394 1.22428 0.81160 1.03732 1.00198 0.93930 0.93880 0.93752 0.93045 0.84438 0.90854 0.87326 0.80225 0.87968 0.89226 0.89696 0.89549 0.87713 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 9.04 71.98 0.65 -5.33 16 2 C 0.22 9.21 2.44 44.17 0.11 9.32 16 3 H 0.02 0.99 7.74 -2.39 -0.02 0.97 16 4 C -0.52 -25.99 8.76 25.60 0.22 -25.77 16 5 H 0.05 2.70 7.83 -2.91 -0.02 2.68 16 6 C 0.02 0.93 5.17 84.65 0.44 1.36 16 7 N -0.92 -49.62 12.16 21.45 0.26 -49.36 16 8 Si 0.95 41.71 29.55 68.60 2.03 43.73 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.69 -23.11 6.22 -499.46 -3.11 -26.21 16 13 C 0.09 2.30 4.92 85.55 0.42 2.72 16 14 C 0.23 5.72 6.27 41.04 0.26 5.97 16 15 C -0.30 -7.90 9.61 22.35 0.21 -7.68 16 16 C 0.55 15.96 7.45 85.05 0.63 16.60 16 17 O -0.55 -18.78 16.44 -4.60 -0.08 -18.86 16 18 N -0.56 -14.78 2.96 -806.44 -2.39 -17.17 16 19 C 0.08 1.57 10.00 127.77 1.28 2.85 16 20 C 0.69 18.65 8.12 179.18 1.45 20.11 16 21 O -0.56 -16.71 15.79 -4.00 -0.06 -16.77 16 22 N -0.52 -12.52 3.01 -665.66 -2.00 -14.52 16 23 C 0.07 1.24 8.67 127.77 1.11 2.35 16 24 H 0.04 1.34 7.55 -2.38 -0.02 1.33 16 25 H 0.04 1.96 6.83 -2.38 -0.02 1.94 16 26 H 0.04 1.57 8.07 -2.38 -0.02 1.55 16 27 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.34 10.17 5.53 -89.70 -0.50 9.67 16 29 H 0.07 1.62 6.52 -2.39 -0.02 1.60 16 30 H 0.11 2.83 7.78 -2.39 -0.02 2.81 16 31 H 0.18 4.30 7.93 -2.91 -0.02 4.28 16 32 H 0.10 2.09 6.90 -2.39 -0.02 2.07 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.64 7.20 -2.39 -0.02 1.63 16 36 H 0.10 1.84 7.37 -2.38 -0.02 1.82 16 37 H 0.10 1.72 6.20 -2.39 -0.01 1.70 16 Total: -1.00 -63.02 305.96 2.03 -60.98 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.60 Total: 15.68 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 6.79 Total: 22.50 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -7.24 Total: -107.26 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.14 Total: -35.63 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -63.02 2.03 -60.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333384227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.081 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds