Wall clock time and date at job start Mon Mar 30 2020 01:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 114.00239 * 2 1 4 4 C 1.53000 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46957 * 64.99941 * 4 3 2 6 6 C 1.36931 * 120.00229 * 270.00340 * 5 4 3 7 7 H 1.08002 * 119.99799 * 348.22669 * 6 5 4 8 8 C 1.38797 * 119.99791 * 168.23343 * 6 5 4 9 9 N 1.31560 * 120.00678 * 12.50341 * 8 6 5 10 10 Si 1.86804 * 119.99646 * 192.50346 * 8 6 5 11 11 H 1.48496 * 109.47246 * 89.99850 * 10 8 6 12 12 H 1.48499 * 109.47026 * 209.99741 * 10 8 6 13 13 H 1.48497 * 109.47209 * 329.99910 * 10 8 6 14 14 C 1.38221 * 119.99775 * 89.99890 * 5 4 3 15 15 N 1.31570 * 126.46298 * 263.86758 * 14 5 4 16 16 N 1.28419 * 110.49837 * 180.29591 * 15 14 5 17 17 N 1.28903 * 110.35324 * 359.74599 * 16 15 14 18 18 N 1.35440 * 126.45564 * 83.73877 * 14 5 4 19 19 C 1.46501 * 127.38863 * 359.97438 * 18 14 5 20 20 C 1.53001 * 115.54834 * 65.47808 * 19 18 14 21 21 C 1.53002 * 117.49805 * 279.81499 * 19 18 14 22 22 C 1.52995 * 117.50166 * 211.15402 * 19 18 14 23 23 H 1.09003 * 109.46573 * 59.99907 * 1 2 3 24 24 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46825 * 299.99945 * 1 2 3 26 26 H 1.09004 * 109.46922 * 59.99797 * 3 2 1 27 27 H 1.08997 * 109.46749 * 300.00045 * 3 2 1 28 28 H 1.09002 * 109.46714 * 305.00271 * 4 3 2 29 29 H 1.08990 * 109.47023 * 185.00162 * 4 3 2 30 30 H 0.96998 * 120.00506 * 184.94455 * 9 8 6 31 31 H 1.09004 * 109.46589 * 53.88062 * 20 19 18 32 32 H 1.09004 * 109.47023 * 173.87653 * 20 19 18 33 33 H 1.08994 * 109.47597 * 293.88223 * 20 19 18 34 34 H 1.09002 * 117.49982 * 359.97438 * 21 19 18 35 35 H 1.08997 * 117.49680 * 145.02258 * 21 19 18 36 36 H 1.09004 * 117.49958 * 214.98312 * 22 19 18 37 37 H 1.09002 * 117.49682 * 359.97269 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3345 7 1 4.0553 -1.3993 -0.4388 8 6 4.2752 -1.4037 -2.5704 9 7 4.5724 -0.6746 -3.6243 10 14 4.0920 -3.2553 -2.7372 11 1 2.6799 -3.5863 -3.0555 12 1 4.9729 -3.7435 -3.8285 13 1 4.4777 -3.9079 -1.4603 14 6 4.2707 1.3526 -2.3473 15 7 3.4620 1.6367 -3.3455 16 7 4.0521 2.3902 -4.2018 17 7 5.2570 2.6441 -3.8205 18 7 5.4448 1.9805 -2.5954 19 6 6.6535 1.9664 -1.7677 20 6 7.3453 0.6083 -1.6332 21 6 6.6918 2.9016 -0.5574 22 6 7.5413 3.2121 -1.7923 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0902 30 1 4.6258 -1.0875 -4.5004 31 1 7.5472 0.2037 -2.6250 32 1 8.2840 0.7307 -1.0927 33 1 6.6977 -0.0768 -1.0862 34 1 5.8179 3.5278 -0.3772 35 1 7.2103 2.5496 0.3344 36 1 8.6183 3.0643 -1.7125 37 1 7.2263 4.0421 -2.4248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333717014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:09 Heat of formation + Delta-G solvation = 110.924514 kcal Electronic energy + Delta-G solvation = -21958.106654 eV Core-core repulsion = 18774.965430 eV Total energy + Delta-G solvation = -3183.141224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.07739 -39.10993 -38.81243 -37.38228 -33.75429 -33.21590 -31.97102 -30.03250 -29.45490 -27.21043 -26.26058 -24.91317 -23.72810 -23.30974 -22.05377 -21.04524 -19.39501 -17.82156 -17.47695 -17.14774 -16.57300 -16.29053 -16.00984 -15.76314 -15.47355 -15.12965 -14.48858 -14.15757 -13.80863 -13.59954 -13.35503 -13.25026 -13.02885 -12.84708 -12.74739 -12.61132 -12.42071 -12.27487 -12.11783 -11.93572 -11.74648 -11.27680 -11.22057 -10.77228 -10.48330 -10.43826 -10.39863 -9.34611 -8.00319 -5.50917 0.73228 1.37948 1.44217 1.52274 1.55421 2.16904 2.43581 2.65035 2.96752 3.12590 3.36208 3.55236 3.79462 3.98570 4.27984 4.33132 4.45965 4.53950 4.61920 4.64602 4.65505 4.70599 4.73688 4.84510 4.90583 4.93280 4.95296 5.06349 5.14846 5.17093 5.20196 5.46250 5.59415 5.78867 6.18256 6.48353 7.02225 7.60733 7.89388 8.27553 9.01120 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.010013 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.665052 B = 2795.803230 C = 3495.507074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.047 3.953 4 C 0.149 3.851 5 N -0.511 5.511 6 C -0.240 4.240 7 H 0.108 0.892 8 C -0.039 4.039 9 N -0.918 5.918 10 Si 0.968 3.032 11 H -0.297 1.297 12 H -0.307 1.307 13 H -0.255 1.255 14 C 0.583 3.417 15 N -0.368 5.368 16 N -0.086 5.086 17 N -0.146 5.146 18 N -0.357 5.357 19 C 0.071 3.929 20 C -0.098 4.098 21 C -0.142 4.142 22 C -0.147 4.147 23 H 0.025 0.975 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.018 0.982 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.027 0.973 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 5.026 12.972 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.313 6.313 3 C -0.032 4.032 4 C 0.024 3.976 5 N -0.234 5.234 6 C -0.368 4.368 7 H 0.125 0.875 8 C -0.235 4.235 9 N -0.563 5.563 10 Si 0.797 3.203 11 H -0.224 1.224 12 H -0.234 1.234 13 H -0.179 1.179 14 C 0.221 3.779 15 N -0.227 5.227 16 N -0.082 5.082 17 N -0.133 5.133 18 N -0.159 5.159 19 C -0.014 4.014 20 C -0.156 4.156 21 C -0.181 4.181 22 C -0.185 4.185 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.037 0.963 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.823 5.350 11.652 13.129 hybrid contribution -0.280 -1.325 -0.505 1.445 sum 2.543 4.025 11.147 12.121 Atomic orbital electron populations 1.22791 0.81079 1.02937 0.99846 1.88005 1.20020 1.27998 1.95252 1.23175 0.95820 0.84856 0.99310 1.21395 0.91560 0.98214 0.86389 1.40739 1.74001 1.02352 1.06274 1.19500 1.43503 0.80011 0.93807 0.87476 1.25541 1.00491 1.01961 0.95507 1.69501 1.51691 1.36115 0.98986 0.85243 0.76518 0.81054 0.77504 1.22446 1.23437 1.17909 1.20605 0.82216 0.86363 0.88746 1.74601 1.29218 1.16501 1.02375 1.77567 1.00592 1.09834 1.20237 1.81914 1.13201 1.21646 0.96519 1.51721 1.11518 1.37040 1.15665 1.21243 0.87109 0.95484 0.97614 1.21307 1.00198 0.92876 1.01234 1.23591 1.02258 0.99316 0.92913 1.23437 0.99216 0.95684 1.00150 0.95617 0.89423 0.92252 0.90385 0.96323 0.88602 0.90239 0.94176 0.95382 0.87477 0.91819 0.89033 0.83744 0.84469 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.39 -14.66 10.18 -148.98 -1.52 -16.18 16 3 C 0.05 1.58 6.28 71.98 0.45 2.03 16 4 C 0.15 5.09 6.08 86.38 0.52 5.61 16 5 N -0.51 -23.07 2.63 -522.78 -1.38 -24.45 16 6 C -0.24 -11.77 8.42 84.03 0.71 -11.06 16 7 H 0.11 4.97 7.84 -2.91 -0.02 4.95 16 8 C -0.04 -2.08 5.43 84.87 0.46 -1.62 16 9 N -0.92 -53.74 10.00 21.64 0.22 -53.53 16 10 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 13 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 14 C 0.58 28.93 4.99 260.63 1.30 30.23 16 15 N -0.37 -20.62 11.08 -58.67 -0.65 -21.27 16 16 N -0.09 -4.73 13.38 37.02 0.50 -4.23 16 17 N -0.15 -7.36 13.81 37.02 0.51 -6.85 16 18 N -0.36 -16.24 3.84 -309.32 -1.19 -17.43 16 19 C 0.07 2.46 2.93 3.60 0.01 2.47 16 20 C -0.10 -3.33 9.94 71.98 0.72 -2.62 16 21 C -0.14 -3.40 10.10 30.62 0.31 -3.09 16 22 C -0.15 -3.78 10.02 30.62 0.31 -3.47 16 23 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 2.90 8.02 -2.39 -0.02 2.88 16 29 H 0.08 2.36 7.70 -2.39 -0.02 2.34 16 30 H 0.25 15.05 8.32 -92.71 -0.77 14.28 16 31 H 0.03 1.12 8.14 -2.38 -0.02 1.11 16 32 H 0.11 2.54 8.09 -2.39 -0.02 2.52 16 33 H 0.06 2.45 7.29 -2.39 -0.02 2.43 16 34 H 0.09 2.26 7.88 -2.39 -0.02 2.25 16 35 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.47 319.44 5.62 -66.85 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.06 Total: 9.70 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 6.04 Total: 20.59 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -1.99 Total: -127.75 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.52 Total: -16.18 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.47 5.62 -66.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333717014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.778 kcal (2) G-P(sol) polarization free energy of solvation -72.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds