Wall clock time and date at job start Mon Mar 30 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47326 * 2 1 4 4 C 1.46494 * 120.00267 * 270.00157 * 3 2 1 5 5 C 1.50704 * 109.47140 * 269.99526 * 4 3 2 6 6 H 1.08003 * 119.99438 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00218 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47364 * 60.00288 * 9 7 5 11 11 H 1.48509 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47372 * 299.99956 * 9 7 5 13 13 C 1.34778 * 119.99589 * 89.99370 * 3 2 1 14 14 O 1.21284 * 119.99513 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00389 * 0.02562 * 13 3 2 16 16 C 1.52999 * 109.47043 * 179.97438 * 15 13 3 17 17 C 1.50701 * 109.47043 * 179.97438 * 16 15 13 18 18 N 1.30272 * 126.28028 * 89.97438 * 17 16 15 19 19 N 1.28674 * 109.38187 * 180.02562 * 18 17 16 20 20 C 1.30276 * 109.37873 * 0.02562 * 19 18 17 21 21 C 1.50698 * 126.28250 * 179.97438 * 20 19 18 22 22 O 1.34364 * 126.28208 * 269.97587 * 17 16 15 23 23 H 1.08996 * 109.47909 * 300.00187 * 1 2 3 24 24 H 1.09007 * 109.47053 * 60.00479 * 1 2 3 25 25 H 1.09004 * 109.47494 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47909 * 239.99813 * 2 1 3 27 27 H 1.09000 * 109.47430 * 119.99581 * 2 1 3 28 28 H 1.09001 * 109.47371 * 29.99257 * 4 3 2 29 29 H 1.08994 * 109.47614 * 149.99585 * 4 3 2 30 30 H 0.97007 * 120.00402 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.46810 * 60.00054 * 15 13 3 32 32 H 1.08998 * 109.46784 * 299.99810 * 15 13 3 33 33 H 1.09006 * 109.47163 * 59.99875 * 16 15 13 34 34 H 1.09004 * 109.47043 * 300.00011 * 16 15 13 35 35 H 1.08997 * 109.47444 * 90.01974 * 21 20 19 36 36 H 1.09002 * 109.46698 * 210.02579 * 21 20 19 37 37 H 1.09002 * 109.47090 * 330.01523 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0956 7 6 4.1492 2.3898 -2.8778 8 7 3.3489 3.1250 -3.6184 9 14 5.9133 2.0957 -3.4173 10 1 6.1404 0.6389 -3.5946 11 1 6.1608 2.7959 -4.7033 12 1 6.8411 2.6190 -2.3827 13 6 2.2428 2.0165 1.1673 14 8 2.6467 3.1602 1.1672 15 6 1.9920 1.3060 2.4724 16 6 2.3239 2.2432 3.6353 17 6 2.0725 1.5329 4.9404 18 7 2.9337 0.8187 5.6077 19 7 2.3757 0.3629 6.6737 20 6 1.1392 0.7704 6.7225 21 6 0.1397 0.4590 7.8064 22 8 0.9189 1.5199 5.6292 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6878 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 3.6750 3.5155 -4.4444 31 1 2.6225 0.4188 2.5299 32 1 0.9442 1.0115 2.5302 33 1 1.6937 3.1308 3.5778 34 1 3.3719 2.5374 3.5772 35 1 0.1951 1.2228 8.5821 36 1 -0.8640 0.4445 7.3817 37 1 0.3651 -0.5156 8.2394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335974535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:14 Heat of formation + Delta-G solvation = -9.174138 kcal Electronic energy + Delta-G solvation = -20001.320541 eV Core-core repulsion = 16780.678697 eV Total energy + Delta-G solvation = -3220.641844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.33863 -39.24169 -36.27190 -35.47847 -34.45426 -32.85364 -32.09192 -30.13636 -28.62785 -27.17230 -25.19729 -23.07572 -22.93079 -22.61385 -21.66157 -18.44884 -17.52479 -17.26132 -16.57535 -16.35010 -15.62814 -15.34948 -14.75345 -14.50873 -14.26659 -13.69166 -13.48703 -13.42785 -13.16282 -12.78757 -12.54702 -12.34368 -12.17986 -12.02997 -11.94416 -11.64973 -11.34374 -11.17876 -10.99763 -10.93257 -10.70560 -10.52982 -10.14537 -9.67186 -9.62726 -8.99105 -8.44102 -7.72222 -6.05389 -4.10287 1.00282 2.10585 2.25136 3.30652 3.32751 3.36694 3.41299 3.59462 3.92826 4.25530 4.44783 4.64468 4.82581 4.89657 4.97632 5.05275 5.16067 5.24856 5.27520 5.29128 5.39422 5.53098 5.57465 5.60043 5.72468 5.86262 5.94006 6.01836 6.19854 6.44587 7.02165 7.41306 7.50227 7.90616 8.18983 8.21724 8.35618 8.86336 9.02071 9.54980 11.02687 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003889 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.472155 B = 7197.395221 C = 7615.838925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.509 3.491 14 O -0.541 6.541 15 C -0.139 4.139 16 C -0.010 4.010 17 C 0.177 3.823 18 N -0.287 5.287 19 N -0.290 5.290 20 C 0.151 3.849 21 C -0.056 4.056 22 O -0.225 6.225 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -6.842 17.266 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.295 3.705 14 O -0.419 6.419 15 C -0.180 4.180 16 C -0.049 4.049 17 C -0.034 4.034 18 N -0.133 5.133 19 N -0.137 5.137 20 C -0.060 4.060 21 C -0.114 4.114 22 O -0.105 6.105 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.295 -6.719 17.385 20.401 hybrid contribution -0.131 0.295 -0.720 0.790 sum -8.427 -6.424 16.665 19.748 Atomic orbital electron populations 1.22220 0.96769 1.01459 1.02309 1.21443 0.93509 0.84164 1.02846 1.48245 1.63348 1.13265 1.07711 1.19285 0.96317 0.93640 0.78011 1.21404 0.96907 1.32072 1.06324 0.92447 1.24928 0.97880 0.94878 0.96356 1.69918 1.35745 1.33399 1.14355 0.86557 0.84759 0.78274 0.77835 1.20237 1.21192 1.20114 1.19998 0.78755 0.86862 0.84871 1.90691 1.46032 1.17986 1.87198 1.21721 1.03819 0.99770 0.92693 1.20016 1.06298 0.96860 0.81713 1.28227 0.79030 0.98387 0.97738 1.74442 1.26426 1.11203 1.01257 1.74390 1.04748 1.20740 1.13861 1.27993 0.95974 0.92656 0.89391 1.20321 0.94750 1.04421 0.91897 1.84798 1.38471 1.56693 1.30525 0.93138 0.91944 0.92152 0.89798 0.91686 0.94972 0.93813 0.92646 0.88448 0.89058 0.87574 0.85997 0.88450 0.88929 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.15 0.38 -1.80 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.10 2.46 -175.07 -0.43 -12.53 16 4 C 0.25 6.31 5.16 -5.20 -0.03 6.28 16 5 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 9.98 7.67 -10.98 -0.08 9.89 16 14 O -0.54 -12.82 15.56 5.55 0.09 -12.74 16 15 C -0.14 -1.95 4.23 -27.88 -0.12 -2.06 16 16 C -0.01 -0.13 5.13 -27.88 -0.14 -0.28 16 17 C 0.18 2.41 7.73 -12.94 -0.10 2.31 16 18 N -0.29 -4.44 12.22 32.55 0.40 -4.05 16 19 N -0.29 -4.12 12.22 32.55 0.40 -3.72 16 20 C 0.15 1.66 8.48 -12.94 -0.11 1.55 16 21 C -0.06 -0.29 10.51 36.00 0.38 0.09 16 22 O -0.23 -2.78 10.87 5.37 0.06 -2.72 16 23 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 27 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.10 1.29 7.40 -51.93 -0.38 0.90 16 32 H 0.09 1.09 7.19 -51.93 -0.37 0.71 16 33 H 0.11 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.12 1.71 8.10 -51.93 -0.42 1.29 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -34.70 322.26 -4.38 -39.08 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.19 Total: -3.35 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.27 Total: 4.07 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 1.10 Total: -45.99 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.14 Total: -15.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.70 -4.38 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335974535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.906 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds