Wall clock time and date at job start Mon Mar 30 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47326 * 2 1 4 4 C 1.46494 * 120.00267 * 270.00157 * 3 2 1 5 5 C 1.50704 * 109.47140 * 269.99526 * 4 3 2 6 6 H 1.08003 * 119.99438 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00218 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00023 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99738 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47364 * 60.00288 * 9 7 5 11 11 H 1.48509 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47372 * 299.99956 * 9 7 5 13 13 C 1.34778 * 119.99589 * 89.99370 * 3 2 1 14 14 O 1.21284 * 119.99513 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00389 * 0.02562 * 13 3 2 16 16 C 1.52999 * 109.47043 * 179.97438 * 15 13 3 17 17 C 1.50701 * 109.47043 * 179.97438 * 16 15 13 18 18 N 1.30272 * 126.28028 * 89.97438 * 17 16 15 19 19 N 1.28674 * 109.38187 * 180.02562 * 18 17 16 20 20 C 1.30276 * 109.37873 * 0.02562 * 19 18 17 21 21 C 1.50698 * 126.28250 * 179.97438 * 20 19 18 22 22 O 1.34364 * 126.28208 * 269.97587 * 17 16 15 23 23 H 1.08996 * 109.47909 * 300.00187 * 1 2 3 24 24 H 1.09007 * 109.47053 * 60.00479 * 1 2 3 25 25 H 1.09004 * 109.47494 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47909 * 239.99813 * 2 1 3 27 27 H 1.09000 * 109.47430 * 119.99581 * 2 1 3 28 28 H 1.09001 * 109.47371 * 29.99257 * 4 3 2 29 29 H 1.08994 * 109.47614 * 149.99585 * 4 3 2 30 30 H 0.97007 * 120.00402 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.46810 * 60.00054 * 15 13 3 32 32 H 1.08998 * 109.46784 * 299.99810 * 15 13 3 33 33 H 1.09006 * 109.47163 * 59.99875 * 16 15 13 34 34 H 1.09004 * 109.47043 * 300.00011 * 16 15 13 35 35 H 1.08997 * 109.47444 * 90.01974 * 21 20 19 36 36 H 1.09002 * 109.46698 * 210.02579 * 21 20 19 37 37 H 1.09002 * 109.47090 * 330.01523 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0956 7 6 4.1492 2.3898 -2.8778 8 7 3.3489 3.1250 -3.6184 9 14 5.9133 2.0957 -3.4173 10 1 6.1404 0.6389 -3.5946 11 1 6.1608 2.7959 -4.7033 12 1 6.8411 2.6190 -2.3827 13 6 2.2428 2.0165 1.1673 14 8 2.6467 3.1602 1.1672 15 6 1.9920 1.3060 2.4724 16 6 2.3239 2.2432 3.6353 17 6 2.0725 1.5329 4.9404 18 7 2.9337 0.8187 5.6077 19 7 2.3757 0.3629 6.6737 20 6 1.1392 0.7704 6.7225 21 6 0.1397 0.4590 7.8064 22 8 0.9189 1.5199 5.6292 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6878 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 3.6750 3.5155 -4.4444 31 1 2.6225 0.4188 2.5299 32 1 0.9442 1.0115 2.5302 33 1 1.6937 3.1308 3.5778 34 1 3.3719 2.5374 3.5772 35 1 0.1951 1.2228 8.5821 36 1 -0.8640 0.4445 7.3817 37 1 0.3651 -0.5156 8.2394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335974535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:14 Heat of formation + Delta-G solvation = -36.531321 kcal Electronic energy + Delta-G solvation = -20002.506837 eV Core-core repulsion = 16780.678697 eV Total energy + Delta-G solvation = -3221.828140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.29855 -40.81337 -37.24825 -37.05948 -35.60278 -34.84646 -33.00613 -31.59207 -29.79017 -28.68661 -26.56265 -24.74212 -24.10881 -23.59874 -22.88171 -19.93327 -18.70935 -18.50096 -18.27378 -17.73745 -17.19410 -16.70934 -16.19485 -15.71536 -15.55209 -14.86300 -14.68666 -14.45451 -14.06956 -14.01568 -13.59240 -13.56015 -13.46641 -13.34604 -13.23387 -13.02895 -12.94912 -12.64201 -12.51888 -12.41805 -12.12960 -11.98182 -11.82068 -11.72223 -10.74381 -10.63444 -10.46557 -9.45249 -8.21925 -6.36495 0.08497 1.20533 1.27358 1.37483 1.41455 1.48589 1.79228 2.28104 2.43207 2.84930 3.07923 3.40021 3.60032 3.77615 3.88476 4.09893 4.13388 4.29568 4.38878 4.43845 4.50550 4.59717 4.62351 4.75013 4.78382 4.87167 4.96352 4.99182 5.06561 5.08250 5.23726 5.39259 5.58231 5.84992 6.07213 6.69528 6.78519 7.22415 7.28008 7.45051 8.84901 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003889 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.472155 B = 7197.395221 C = 7615.838925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.502 3.498 14 O -0.592 6.592 15 C -0.120 4.120 16 C -0.003 4.003 17 C 0.176 3.824 18 N -0.316 5.316 19 N -0.330 5.330 20 C 0.170 3.830 21 C -0.057 4.057 22 O -0.227 6.227 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.022 0.978 29 H 0.000 1.000 30 H 0.267 0.733 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -8.675 18.941 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.141 3.859 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.473 6.473 15 C -0.160 4.160 16 C -0.042 4.042 17 C -0.035 4.035 18 N -0.162 5.162 19 N -0.176 5.176 20 C -0.041 4.041 21 C -0.115 4.115 22 O -0.107 6.107 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.040 0.960 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.129 -8.609 19.089 22.844 hybrid contribution 0.033 0.863 -1.157 1.444 sum -9.096 -7.745 17.933 21.548 Atomic orbital electron populations 1.22155 0.94430 1.03493 1.01864 1.21762 0.95417 0.81365 1.03913 1.48263 1.63597 1.15066 1.06288 1.18708 0.95172 0.91667 0.80354 1.21714 0.97999 1.32082 1.06566 0.92817 1.25829 1.02273 0.94490 0.96437 1.70036 1.37754 1.34195 1.14796 0.85503 0.79191 0.78973 0.77366 1.18574 1.20381 1.20305 1.20936 0.77312 0.86444 0.86268 1.90662 1.48150 1.20444 1.88076 1.21603 1.05965 0.99334 0.89105 1.19855 1.05746 0.96929 0.81683 1.27965 0.79392 0.98450 0.97732 1.74373 1.27614 1.12063 1.02158 1.74342 1.06433 1.22691 1.14171 1.29146 0.95878 0.89977 0.89077 1.20745 0.94291 1.05768 0.90647 1.84820 1.37842 1.57053 1.30954 0.91893 0.94111 0.88800 0.90990 0.88357 0.95978 0.98201 0.92403 0.86989 0.85962 0.87107 0.87262 0.86318 0.86581 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.60 -24.69 2.46 -826.17 -2.03 -26.72 16 4 C 0.26 13.99 5.16 85.64 0.44 14.43 16 5 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 9 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.50 19.73 7.67 87.66 0.67 20.40 16 14 O -0.59 -29.07 15.56 -3.04 -0.05 -29.11 16 15 C -0.12 -3.13 4.23 29.85 0.13 -3.01 16 16 C 0.00 -0.08 5.13 29.85 0.15 0.07 16 17 C 0.18 4.56 7.73 88.34 0.68 5.24 16 18 N -0.32 -9.51 12.22 -165.50 -2.02 -11.54 16 19 N -0.33 -8.92 12.22 -165.50 -2.02 -10.94 16 20 C 0.17 3.31 8.48 88.34 0.75 4.06 16 21 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 22 O -0.23 -5.07 10.87 -3.71 -0.04 -5.11 16 23 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 24 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 27 H 0.10 2.25 6.44 -2.39 -0.02 2.24 16 28 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 29 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 30 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 31 H 0.11 2.67 7.40 -2.39 -0.02 2.66 16 32 H 0.12 2.48 7.19 -2.39 -0.02 2.47 16 33 H 0.11 2.75 8.10 -2.38 -0.02 2.73 16 34 H 0.11 3.11 8.10 -2.38 -0.02 3.09 16 35 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -78.87 322.26 2.74 -76.13 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.07 Total: 4.30 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.53 Total: 11.77 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.79 Total: -105.04 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.09 Total: -34.22 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -78.87 2.74 -76.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335974535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.598 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds