Wall clock time and date at job start Mon Mar 30 2020 00:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99832 * 2 1 4 4 C 1.50693 * 109.47474 * 270.00608 * 3 2 1 5 5 N 1.34497 * 126.28727 * 269.97418 * 4 3 2 6 6 C 1.31126 * 105.61473 * 180.02562 * 5 4 3 7 7 O 1.33644 * 106.89983 * 359.97438 * 6 5 4 8 8 N 1.21297 * 109.80913 * 0.02562 * 7 6 5 9 9 C 1.34779 * 120.00052 * 180.02562 * 2 1 3 10 10 O 1.21283 * 119.99644 * 180.02562 * 9 2 1 11 11 C 1.50697 * 119.99873 * 359.97438 * 9 2 1 12 12 C 1.53001 * 109.46946 * 180.02562 * 11 9 2 13 13 C 1.52996 * 109.47269 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47269 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47324 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99756 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00650 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99751 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46900 * 60.00212 * 19 17 15 21 21 H 1.48498 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47292 * 300.00770 * 19 17 15 23 23 H 1.08998 * 109.47335 * 89.99753 * 1 2 3 24 24 H 1.09004 * 109.46504 * 209.99729 * 1 2 3 25 25 H 1.08995 * 109.47129 * 329.99356 * 1 2 3 26 26 H 1.08999 * 109.47056 * 150.00132 * 3 2 1 27 27 H 1.09003 * 109.46948 * 30.00530 * 3 2 1 28 28 H 1.08005 * 126.55289 * 180.26876 * 6 5 4 29 29 H 1.08994 * 109.47648 * 300.00382 * 11 9 2 30 30 H 1.09001 * 109.46774 * 60.01149 * 11 9 2 31 31 H 1.09008 * 109.47033 * 300.00399 * 12 11 9 32 32 H 1.08999 * 109.47335 * 60.00117 * 12 11 9 33 33 H 1.09008 * 109.46901 * 299.99846 * 13 12 11 34 34 H 1.08994 * 109.47438 * 59.99997 * 13 12 11 35 35 H 1.09000 * 109.47280 * 299.99889 * 14 13 12 36 36 H 1.09005 * 109.47294 * 59.99885 * 14 13 12 37 37 H 0.97000 * 120.00272 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 7 3.5203 1.3922 -2.1711 6 6 3.3240 1.9782 -3.3276 7 8 2.1540 2.6188 -3.2448 8 7 1.6695 2.4495 -2.1458 9 6 2.1390 -1.1672 -0.0005 10 8 3.3518 -1.1671 -0.0001 11 6 1.3855 -2.4723 -0.0005 12 6 2.3797 -3.6352 -0.0005 13 6 1.6148 -4.9602 -0.0012 14 6 2.6091 -6.1231 -0.0018 15 6 1.8556 -7.4283 -0.0018 16 1 0.7756 -7.4283 -0.0018 17 6 2.5451 -8.6222 -0.0029 18 7 3.8602 -8.6222 -0.0034 19 14 1.6111 -10.2400 -0.0036 20 1 0.7570 -10.3179 -1.2159 21 1 2.5761 -11.3687 -0.0041 22 1 0.7577 -10.3195 1.2091 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 3.1499 1.1384 0.5138 27 1 1.6084 2.0283 0.5139 28 1 3.9799 1.9451 -4.1850 29 1 0.7591 -2.5303 0.8896 30 1 0.7586 -2.5298 -0.8904 31 1 3.0065 -3.5774 -0.8905 32 1 3.0064 -3.5775 0.8894 33 1 0.9878 -5.0182 0.8887 34 1 0.9885 -5.0178 -0.8913 35 1 3.2357 -6.0649 -0.8918 36 1 3.2358 -6.0658 0.8882 37 1 4.3453 -9.4623 -0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343724074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:01 Heat of formation + Delta-G solvation = 21.416713 kcal Electronic energy + Delta-G solvation = -19571.159164 eV Core-core repulsion = 16351.843840 eV Total energy + Delta-G solvation = -3219.315325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.88790 -39.98485 -36.62493 -35.40754 -34.89038 -32.88120 -32.51820 -30.14471 -28.61673 -26.70488 -25.34090 -24.36603 -23.03703 -21.93178 -20.01689 -19.27005 -18.39072 -18.19013 -16.95901 -16.33885 -16.18498 -16.03325 -15.75357 -14.82171 -14.44063 -13.72712 -13.60835 -13.20542 -12.94921 -12.77329 -12.62213 -12.32825 -12.12737 -11.96767 -11.62733 -11.55848 -11.26833 -10.95815 -10.54186 -10.52609 -10.51084 -10.38870 -9.77475 -9.59545 -9.21206 -9.08693 -8.97610 -8.28817 -5.93612 -3.96319 0.87249 1.86304 2.60764 2.73990 2.92397 3.36207 3.40543 3.42792 3.49118 3.79295 4.48303 4.52485 4.77904 4.83251 4.91597 5.13216 5.27707 5.31886 5.38737 5.41380 5.42562 5.42791 5.70446 5.84547 6.12405 6.14744 6.31728 6.55799 6.85211 7.01760 7.14162 7.23070 7.75440 7.87023 7.91867 8.07723 8.14756 8.49381 9.11214 9.67200 11.17682 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.002980 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.701189 B = 9392.410112 C = 9653.408616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.206 3.794 4 C 0.153 3.847 5 N -0.464 5.464 6 C 0.156 3.844 7 O 0.075 5.925 8 N -0.378 5.378 9 C 0.512 3.488 10 O -0.514 6.514 11 C -0.135 4.135 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.263 0.737 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 24.613 -3.679 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C 0.081 3.919 4 C -0.121 4.121 5 N -0.196 5.196 6 C -0.085 4.085 7 O 0.015 5.985 8 N -0.085 5.085 9 C 0.301 3.699 10 O -0.387 6.387 11 C -0.175 4.175 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.279 0.721 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.890 24.528 -3.049 25.409 hybrid contribution -0.369 -0.861 -0.470 1.048 sum -6.259 23.667 -3.519 24.732 Atomic orbital electron populations 1.21859 0.78769 1.03693 1.02064 1.47988 1.07237 1.05078 1.75638 1.19559 1.00364 0.86240 0.85772 1.26519 0.87835 0.96378 1.01389 1.72035 1.23909 1.21264 1.02368 1.30618 0.87910 0.90727 0.99278 1.85292 1.30670 1.55489 1.27045 1.74633 1.21427 1.19497 0.92931 1.21249 0.88421 0.85297 0.74900 1.90743 1.13871 1.86979 1.47107 1.21829 1.00101 0.91736 1.03820 1.21473 0.97012 0.92670 1.03017 1.21646 0.99078 0.93986 1.00029 1.19090 0.94043 0.91221 0.97323 1.21250 0.92941 0.91229 1.50540 0.92816 1.25038 0.94838 0.99205 0.95456 1.69965 1.06046 1.26619 1.50841 0.86673 0.79577 0.83270 0.78541 1.20292 1.21311 1.20287 0.92809 0.89973 0.90887 0.86626 0.87786 0.72140 0.88961 0.89291 0.91830 0.91692 0.93457 0.93544 0.96604 0.96566 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.29 59.85 0.62 1.23 16 2 N -0.62 -6.98 2.86 -182.95 -0.52 -7.50 16 3 C 0.21 2.14 6.07 -5.20 -0.03 2.11 16 4 C 0.15 1.79 7.80 -156.37 -1.22 0.57 16 5 N -0.46 -5.67 11.55 -13.72 -0.16 -5.83 16 6 C 0.16 1.20 13.40 51.98 0.70 1.89 16 7 O 0.08 0.68 11.31 18.10 0.20 0.88 16 8 N -0.38 -4.16 12.16 30.87 0.38 -3.78 16 9 C 0.51 7.50 7.67 -10.99 -0.08 7.42 16 10 O -0.51 -9.56 15.56 5.56 0.09 -9.48 16 11 C -0.14 -1.87 4.25 -27.88 -0.12 -1.99 16 12 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.55 6.44 -51.93 -0.33 0.22 16 25 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 26 H 0.12 1.33 7.42 -51.93 -0.39 0.94 16 27 H 0.10 0.76 7.89 -51.93 -0.41 0.35 16 28 H 0.26 0.51 8.06 -52.48 -0.42 0.09 16 29 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 30 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 31 H 0.06 1.26 8.10 -51.92 -0.42 0.84 16 32 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -37.04 322.44 -5.65 -42.69 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -5.26 Total: -5.12 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.95 Total: -6.74 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.43 Total: -44.10 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.29 Total: -8.59 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.04 -5.65 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343724074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.108 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds