Wall clock time and date at job start Mon Mar 30 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30814 * 125.32348 * 2 1 4 4 C 1.34146 * 110.10844 * 180.02562 * 3 2 1 5 5 N 1.33132 * 126.09706 * 180.02562 * 4 3 2 6 6 C 1.33001 * 120.00343 * 359.96983 * 5 4 3 7 7 O 1.21566 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99960 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.47682 * 320.00573 * 8 6 5 10 10 N 1.46903 * 109.46827 * 200.00240 * 8 6 5 11 11 C 1.53008 * 109.47009 * 80.00773 * 8 6 5 12 12 C 1.53001 * 109.46975 * 184.99600 * 11 8 6 13 13 C 1.50699 * 109.47129 * 179.97438 * 12 11 8 14 14 H 1.08002 * 119.99651 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00383 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00322 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46784 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46804 * 120.00177 * 17 15 13 20 20 H 1.48505 * 109.47065 * 240.00144 * 17 15 13 21 21 N 1.37126 * 107.80622 * 0.02562 * 4 3 2 22 22 C 1.46499 * 127.02050 * 180.02562 * 21 4 3 23 23 N 1.35022 * 125.32177 * 180.32639 * 2 1 3 24 24 H 0.96993 * 126.61548 * 0.03105 * 23 2 1 25 25 H 1.09002 * 109.46825 * 89.96970 * 1 2 3 26 26 H 1.08997 * 109.46984 * 209.97004 * 1 2 3 27 27 H 1.08998 * 109.47166 * 329.97293 * 1 2 3 28 28 H 1.00894 * 111.00087 * 300.00121 * 10 8 6 29 29 H 1.00898 * 110.99977 * 63.95681 * 10 8 6 30 30 H 1.09000 * 109.46753 * 304.99243 * 11 8 6 31 31 H 1.08996 * 109.47054 * 64.99820 * 11 8 6 32 32 H 1.09001 * 109.47137 * 299.99990 * 12 11 8 33 33 H 1.09004 * 109.46966 * 59.99909 * 12 11 8 34 34 H 0.97001 * 120.00358 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.47391 * 89.99608 * 22 21 4 36 36 H 1.09001 * 109.46813 * 329.99664 * 22 21 4 37 37 H 1.09004 * 109.47041 * 209.99792 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2634 1.0673 0.0000 4 6 3.5578 0.7153 -0.0006 5 7 4.5970 1.5474 -0.0002 6 6 4.3962 2.8622 0.0001 7 8 3.2637 3.3040 0.0006 8 6 5.5725 3.8041 -0.0001 9 1 6.3485 3.4165 0.6600 10 7 5.1414 5.1259 0.4741 11 6 6.1266 3.9277 -1.4210 12 6 7.3944 4.7840 -1.4013 13 6 7.9405 4.9053 -2.8006 14 1 7.4336 4.4205 -3.6219 15 6 9.0864 5.6359 -3.0325 16 7 9.7032 6.2267 -2.0325 17 14 9.7637 5.7857 -4.7670 18 1 8.8921 5.0339 -5.7053 19 1 9.7984 7.2165 -5.1629 20 1 11.1386 5.2262 -4.8116 21 7 3.6198 -0.6546 -0.0015 22 6 4.8282 -1.4829 -0.0019 23 7 2.2877 -1.1017 -0.0063 24 1 1.9870 -2.0238 -0.0120 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 4.4218 5.5069 -0.1218 29 1 4.8312 5.0825 1.4332 30 1 6.3639 2.9360 -1.8060 31 1 5.3808 4.3976 -2.0621 32 1 7.1571 5.7757 -1.0162 33 1 8.1402 4.3141 -0.7600 34 1 10.5093 6.7411 -2.1956 35 1 5.1278 -1.6890 1.0257 36 1 5.6311 -0.9538 -0.5152 37 1 4.6248 -2.4221 -0.5164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345791434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:13 Heat of formation + Delta-G solvation = 85.830053 kcal Electronic energy + Delta-G solvation = -19938.693737 eV Core-core repulsion = 16754.464335 eV Total energy + Delta-G solvation = -3184.229402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.45388 -38.93291 -35.14217 -34.87170 -33.94530 -32.52823 -31.22513 -30.42566 -29.76835 -26.82947 -26.06588 -23.88933 -21.95134 -21.69312 -19.96796 -19.12842 -18.13700 -16.69726 -16.43147 -16.10972 -15.95352 -15.11125 -14.67393 -14.48364 -14.32265 -14.17745 -13.74093 -13.26585 -13.10597 -13.06138 -12.87101 -12.08602 -11.76170 -11.32527 -11.05892 -10.77230 -10.76370 -10.50223 -10.30446 -10.22817 -10.07153 -9.48206 -9.15632 -8.89344 -8.72834 -8.11781 -7.97817 -7.83093 -5.76113 -3.76727 0.68615 0.82419 2.46600 3.16424 3.44887 3.51390 3.56506 3.74400 4.12106 4.35373 4.42822 4.57536 4.66021 4.84016 4.87480 5.02345 5.19977 5.25262 5.39337 5.56756 5.58913 5.77194 6.10332 6.36945 6.51424 6.89479 6.95777 7.09334 7.44470 7.45412 7.84430 7.99192 8.03390 8.17081 8.22886 8.37702 8.71096 9.08113 9.32209 9.84806 11.35099 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.003803 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.132319 B = 7361.030896 C = 7777.142188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.377 3.623 3 N -0.523 5.523 4 C 0.596 3.404 5 N -0.640 5.640 6 C 0.461 3.539 7 O -0.541 6.541 8 C 0.099 3.901 9 H 0.096 0.904 10 N -0.812 5.812 11 C -0.088 4.088 12 C 0.031 3.969 13 C -0.515 4.515 14 H 0.051 0.949 15 C 0.055 3.945 16 N -0.894 5.894 17 Si 0.887 3.113 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.286 1.286 21 N -0.415 5.415 22 C 0.116 3.884 23 N -0.499 5.499 24 H 0.447 0.553 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.343 0.657 29 H 0.329 0.671 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.013 0.987 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.231 -22.089 6.694 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.101 3.899 3 N -0.258 5.258 4 C 0.238 3.762 5 N -0.403 5.403 6 C 0.245 3.755 7 O -0.416 6.416 8 C -0.016 4.016 9 H 0.114 0.886 10 N -0.339 5.339 11 C -0.126 4.126 12 C -0.007 4.007 13 C -0.553 4.553 14 H 0.069 0.931 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.715 3.285 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.212 1.212 21 N -0.222 5.222 22 C -0.024 4.024 23 N -0.227 5.227 24 H 0.295 0.705 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.999 -20.843 6.591 28.317 hybrid contribution -0.865 -1.589 -0.841 1.995 sum -18.864 -22.432 5.750 29.868 Atomic orbital electron populations 1.20654 0.82400 1.05814 1.05530 1.24472 0.96260 0.81554 0.87581 1.72151 1.00999 1.24751 1.27894 1.21311 0.88484 0.81392 0.85036 1.69614 1.25429 1.05736 1.39521 1.22943 0.91623 0.86585 0.74301 1.90715 1.25533 1.80961 1.44427 1.21406 0.93239 0.86061 1.00931 0.88576 1.59111 1.46401 1.21981 1.06402 1.21529 0.99823 1.00745 0.90510 1.19024 0.89964 0.95576 0.96087 1.21382 1.09061 1.30726 0.94160 0.93059 1.24997 0.97062 0.95957 0.96502 1.70000 1.19037 1.34059 1.30330 0.86617 0.78734 0.77628 0.85477 1.19937 1.21169 1.21211 1.47799 0.95664 1.05650 1.73091 1.22049 0.82157 0.94451 1.03762 1.45164 0.96366 1.09640 1.71523 0.70509 0.87854 0.89258 0.87162 0.84385 0.86000 0.92718 0.93726 0.94855 0.96869 0.93353 0.90763 0.86817 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.01 0.38 0.10 16 2 C 0.38 3.24 8.17 -155.17 -1.27 1.97 16 3 N -0.52 -8.05 9.18 -11.07 -0.10 -8.15 16 4 C 0.60 9.67 8.39 -321.65 -2.70 6.97 16 5 N -0.64 -12.46 10.42 -13.32 -0.14 -12.60 16 6 C 0.46 9.98 6.95 -11.77 -0.08 9.90 16 7 O -0.54 -12.51 14.77 5.31 0.08 -12.43 16 8 C 0.10 2.16 3.23 -68.86 -0.22 1.94 16 9 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 10 N -0.81 -16.88 8.44 -5.65 -0.05 -16.93 16 11 C -0.09 -2.16 4.78 -26.73 -0.13 -2.29 16 12 C 0.03 0.88 4.86 -27.88 -0.14 0.74 16 13 C -0.51 -15.83 9.11 -34.44 -0.31 -16.14 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -28.60 13.29 55.43 0.74 -27.87 16 17 Si 0.89 22.97 29.54 -169.99 -5.02 17.95 16 18 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 N -0.42 -4.31 4.12 -68.90 -0.28 -4.60 16 22 C 0.12 0.79 11.51 59.85 0.69 1.47 16 23 N -0.50 -3.11 7.36 32.72 0.24 -2.87 16 24 H 0.45 0.54 8.96 -182.29 -1.63 -1.09 16 25 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.34 7.15 8.58 -39.30 -0.34 6.82 16 29 H 0.33 6.10 9.06 -39.29 -0.36 5.74 16 30 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.03 1.02 7.75 -51.93 -0.40 0.62 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -43.03 323.22 -10.04 -53.08 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.50 Total: 3.27 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.88 Total: 6.27 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: 0.40 Total: -73.01 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -43.03 -10.04 -53.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345791434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.908 kcal (2) G-P(sol) polarization free energy of solvation -43.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds