Wall clock time and date at job start Mon Mar 30 2020 01:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30814 * 125.32348 * 2 1 4 4 C 1.34146 * 110.10844 * 180.02562 * 3 2 1 5 5 N 1.33132 * 126.09706 * 180.02562 * 4 3 2 6 6 C 1.33001 * 120.00343 * 359.96983 * 5 4 3 7 7 O 1.21566 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99960 * 180.02562 * 6 5 4 9 9 H 1.08999 * 109.47682 * 320.00573 * 8 6 5 10 10 N 1.46903 * 109.46827 * 200.00240 * 8 6 5 11 11 C 1.53008 * 109.47009 * 80.00773 * 8 6 5 12 12 C 1.53001 * 109.46975 * 184.99600 * 11 8 6 13 13 C 1.50699 * 109.47129 * 179.97438 * 12 11 8 14 14 H 1.08002 * 119.99651 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00383 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00322 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46784 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46804 * 120.00177 * 17 15 13 20 20 H 1.48505 * 109.47065 * 240.00144 * 17 15 13 21 21 N 1.37126 * 107.80622 * 0.02562 * 4 3 2 22 22 C 1.46499 * 127.02050 * 180.02562 * 21 4 3 23 23 N 1.35022 * 125.32177 * 180.32639 * 2 1 3 24 24 H 0.96993 * 126.61548 * 0.03105 * 23 2 1 25 25 H 1.09002 * 109.46825 * 89.96970 * 1 2 3 26 26 H 1.08997 * 109.46984 * 209.97004 * 1 2 3 27 27 H 1.08998 * 109.47166 * 329.97293 * 1 2 3 28 28 H 1.00894 * 111.00087 * 300.00121 * 10 8 6 29 29 H 1.00898 * 110.99977 * 63.95681 * 10 8 6 30 30 H 1.09000 * 109.46753 * 304.99243 * 11 8 6 31 31 H 1.08996 * 109.47054 * 64.99820 * 11 8 6 32 32 H 1.09001 * 109.47137 * 299.99990 * 12 11 8 33 33 H 1.09004 * 109.46966 * 59.99909 * 12 11 8 34 34 H 0.97001 * 120.00358 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.47391 * 89.99608 * 22 21 4 36 36 H 1.09001 * 109.46813 * 329.99664 * 22 21 4 37 37 H 1.09004 * 109.47041 * 209.99792 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2634 1.0673 0.0000 4 6 3.5578 0.7153 -0.0006 5 7 4.5970 1.5474 -0.0002 6 6 4.3962 2.8622 0.0001 7 8 3.2637 3.3040 0.0006 8 6 5.5725 3.8041 -0.0001 9 1 6.3485 3.4165 0.6600 10 7 5.1414 5.1259 0.4741 11 6 6.1266 3.9277 -1.4210 12 6 7.3944 4.7840 -1.4013 13 6 7.9405 4.9053 -2.8006 14 1 7.4336 4.4205 -3.6219 15 6 9.0864 5.6359 -3.0325 16 7 9.7032 6.2267 -2.0325 17 14 9.7637 5.7857 -4.7670 18 1 8.8921 5.0339 -5.7053 19 1 9.7984 7.2165 -5.1629 20 1 11.1386 5.2262 -4.8116 21 7 3.6198 -0.6546 -0.0015 22 6 4.8282 -1.4829 -0.0019 23 7 2.2877 -1.1017 -0.0063 24 1 1.9870 -2.0238 -0.0120 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 4.4218 5.5069 -0.1218 29 1 4.8312 5.0825 1.4332 30 1 6.3639 2.9360 -1.8060 31 1 5.3808 4.3976 -2.0621 32 1 7.1571 5.7757 -1.0162 33 1 8.1402 4.3141 -0.7600 34 1 10.5093 6.7411 -2.1956 35 1 5.1278 -1.6890 1.0257 36 1 5.6311 -0.9538 -0.5152 37 1 4.6248 -2.4221 -0.5164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345791434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:12 Heat of formation + Delta-G solvation = 51.490897 kcal Electronic energy + Delta-G solvation = -19940.182794 eV Core-core repulsion = 16754.464335 eV Total energy + Delta-G solvation = -3185.718459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36532 -40.43019 -36.80884 -35.80989 -35.20561 -34.67974 -32.32049 -31.85379 -30.88393 -28.31797 -27.27497 -25.72184 -23.25841 -22.67899 -21.82165 -20.31536 -19.24325 -18.35391 -17.69565 -17.52637 -17.19812 -16.75402 -16.46391 -16.01049 -15.35971 -15.09530 -14.92759 -14.78328 -14.27491 -13.81004 -13.62603 -13.45753 -13.39747 -13.30922 -12.78750 -12.50556 -12.28488 -12.06622 -11.86247 -11.66645 -11.59052 -11.27476 -11.10552 -11.00035 -10.48722 -10.30836 -9.50079 -9.13275 -8.11465 -6.22782 -0.25619 0.07739 1.36510 1.41105 1.43280 1.56497 2.38668 2.46052 2.72471 3.13200 3.19886 3.32456 3.71807 3.83213 3.88881 4.26764 4.35045 4.48060 4.51164 4.61281 4.65898 4.67746 4.85812 4.90038 4.99937 5.08896 5.27411 5.56851 5.59125 5.85869 5.99997 6.14997 6.23576 6.32677 6.37780 6.56660 6.89941 6.94252 7.44462 7.66772 9.00573 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.003803 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.132319 B = 7361.030896 C = 7777.142188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.389 3.611 3 N -0.588 5.588 4 C 0.578 3.422 5 N -0.677 5.677 6 C 0.461 3.539 7 O -0.575 6.575 8 C 0.106 3.894 9 H 0.091 0.909 10 N -0.817 5.817 11 C -0.069 4.069 12 C 0.043 3.957 13 C -0.544 4.544 14 H 0.053 0.947 15 C -0.001 4.001 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.274 1.274 21 N -0.404 5.404 22 C 0.106 3.894 23 N -0.459 5.459 24 H 0.475 0.525 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.100 0.900 28 H 0.341 0.659 29 H 0.341 0.659 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.006 0.994 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 -25.226 5.770 33.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.115 3.885 3 N -0.325 5.325 4 C 0.219 3.781 5 N -0.444 5.444 6 C 0.244 3.756 7 O -0.454 6.454 8 C -0.009 4.009 9 H 0.109 0.891 10 N -0.345 5.345 11 C -0.108 4.108 12 C 0.005 3.995 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.199 4.199 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.199 1.199 21 N -0.208 5.208 22 C -0.033 4.033 23 N -0.188 5.188 24 H 0.329 0.671 25 H 0.141 0.859 26 H 0.154 0.846 27 H 0.119 0.881 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.627 -24.174 5.682 31.653 hybrid contribution -0.526 -0.895 -0.493 1.149 sum -20.152 -25.069 5.189 32.581 Atomic orbital electron populations 1.20992 0.78245 1.07632 1.07176 1.25435 0.97997 0.80415 0.84651 1.72051 1.01313 1.28158 1.31018 1.21356 0.88710 0.83085 0.84968 1.69388 1.27049 1.04907 1.43096 1.22552 0.90582 0.87665 0.74774 1.90670 1.25976 1.81429 1.47299 1.21127 0.93893 0.87044 0.98851 0.89069 1.59073 1.46466 1.21765 1.07212 1.21224 0.97618 0.99466 0.92465 1.18814 0.91081 0.94556 0.95011 1.21733 1.10011 1.31633 0.94868 0.92909 1.25991 0.97126 0.95064 1.01685 1.70138 1.19523 1.34383 1.33068 0.85369 0.78229 0.78017 0.79194 1.18926 1.20249 1.19909 1.48127 0.98129 1.04546 1.69952 1.22397 0.80461 0.95141 1.05263 1.45313 0.94319 1.10837 1.68355 0.67061 0.85943 0.84560 0.88140 0.84554 0.84641 0.92834 0.94719 0.97521 0.99239 0.92825 0.89124 0.88908 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.39 5.67 8.17 138.04 1.13 6.80 16 3 N -0.59 -17.95 9.18 -188.94 -1.73 -19.68 16 4 C 0.58 18.82 8.39 261.08 2.19 21.01 16 5 N -0.68 -27.44 10.42 -315.31 -3.29 -30.72 16 6 C 0.46 20.98 6.95 87.93 0.61 21.60 16 7 O -0.58 -27.94 14.77 -3.92 -0.06 -28.00 16 8 C 0.11 4.92 3.23 44.17 0.14 5.06 16 9 H 0.09 4.24 8.14 -2.39 -0.02 4.22 16 10 N -0.82 -35.91 8.44 -171.79 -1.45 -37.36 16 11 C -0.07 -3.59 4.78 30.60 0.15 -3.44 16 12 C 0.04 2.57 4.86 29.85 0.15 2.72 16 13 C -0.54 -34.37 9.11 25.60 0.23 -34.14 16 14 H 0.05 3.24 7.74 -2.91 -0.02 3.21 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -60.65 13.29 21.44 0.28 -60.36 16 17 Si 0.97 47.46 29.54 68.60 2.03 49.49 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 N -0.40 -7.55 4.12 -371.89 -1.53 -9.09 16 22 C 0.11 1.18 11.51 127.77 1.47 2.65 16 23 N -0.46 -3.97 7.36 -50.39 -0.37 -4.34 16 24 H 0.47 -1.43 8.96 -213.06 -1.91 -3.34 16 25 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.34 15.08 8.58 -89.70 -0.77 14.31 16 29 H 0.34 13.33 9.06 -89.70 -0.81 12.52 16 30 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.01 0.41 7.75 -2.39 -0.02 0.40 16 33 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 34 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -99.58 323.22 -1.22 -100.80 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -2.38 Total: 16.10 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 7.28 Total: 23.17 kcal Atomic # 7 Polarization: -153.47 SS G_CDS: -8.09 Total: -161.56 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.06 Total: -28.00 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -99.58 -1.22 -100.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345791434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.295 kcal (2) G-P(sol) polarization free energy of solvation -99.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds