Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21282 * 119.99684 * 2 1 4 4 N 1.34769 * 120.00466 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00241 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46998 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 8 8 N 1.29945 * 126.28943 * 90.02241 * 7 6 5 9 9 O 1.21301 * 110.25300 * 179.97438 * 8 7 6 10 10 C 1.33641 * 109.81235 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.55289 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47252 * 269.97939 * 11 10 9 13 13 C 1.53004 * 109.47076 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47250 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00213 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00187 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47296 * 90.00104 * 18 16 14 20 20 H 1.48505 * 109.47125 * 210.00133 * 18 16 14 21 21 H 1.48501 * 109.47140 * 330.00124 * 18 16 14 22 22 N 1.31132 * 106.89893 * 359.76747 * 10 9 8 23 23 H 1.09008 * 109.47008 * 269.99804 * 1 2 3 24 24 H 1.08991 * 109.47608 * 30.00186 * 1 2 3 25 25 H 1.09007 * 109.46849 * 150.00465 * 1 2 3 26 26 H 0.97010 * 119.99849 * 0.02562 * 4 2 1 27 27 H 1.09000 * 109.47175 * 60.00333 * 5 4 2 28 28 H 1.09001 * 109.47297 * 299.99840 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00226 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00054 * 6 5 4 31 31 H 1.08994 * 109.46823 * 29.98007 * 11 10 9 32 32 H 1.09001 * 109.47261 * 149.97419 * 11 10 9 33 33 H 1.08999 * 109.47264 * 299.99319 * 12 11 10 34 34 H 1.09001 * 109.47412 * 59.99573 * 12 11 10 35 35 H 1.08994 * 109.47056 * 300.00104 * 13 12 11 36 36 H 1.09006 * 109.47249 * 60.00361 * 13 12 11 37 37 H 0.96996 * 120.00753 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0000 6 6 4.1560 -2.6096 0.0001 7 6 5.6630 -2.6095 0.0001 8 7 6.4321 -2.6098 1.0476 9 8 7.5979 -2.6101 0.7125 10 6 7.6859 -2.6095 -0.6210 11 6 8.9530 -2.6091 -1.4368 12 6 9.3815 -1.1665 -1.7127 13 6 10.6683 -1.1662 -2.5404 14 6 11.0901 0.2547 -2.8127 15 1 10.4996 1.0755 -2.4329 16 6 12.2303 0.5070 -3.5456 17 7 12.9496 -0.4923 -4.0076 18 14 12.7535 2.2684 -3.8825 19 1 13.6491 2.7355 -2.7941 20 1 13.4754 2.3310 -5.1788 21 1 11.5518 3.1388 -3.9426 22 7 6.4591 -2.6138 -1.0840 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 1.6960 -2.0072 0.0005 27 1 4.0096 -0.6526 0.8895 28 1 4.0090 -0.6538 -0.8905 29 1 3.7930 -3.1232 0.8902 30 1 3.7923 -3.1236 -0.8897 31 1 9.7403 -3.1228 -0.8852 32 1 8.7769 -3.1229 -2.3818 33 1 8.5942 -0.6528 -2.2643 34 1 9.5576 -0.6527 -0.7676 35 1 11.4555 -1.6798 -1.9885 36 1 10.4926 -1.6800 -3.4855 37 1 13.7515 -0.3149 -4.5236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346518258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = -23.076981 kcal Electronic energy + Delta-G solvation = -19054.612571 eV Core-core repulsion = 15833.367854 eV Total energy + Delta-G solvation = -3221.244716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.65221 -40.68161 -37.65864 -37.02215 -36.01680 -34.81628 -33.26230 -32.03591 -30.00666 -29.45198 -26.04710 -25.56988 -24.09525 -22.59298 -21.96023 -21.54437 -19.14804 -18.69772 -18.28369 -17.79504 -17.23961 -16.84536 -16.56276 -16.08584 -15.82911 -15.25159 -14.94322 -14.58530 -14.37987 -14.06637 -13.74938 -13.64414 -13.28018 -13.19925 -13.06202 -12.85433 -12.69088 -12.60497 -12.47557 -12.32742 -12.09820 -11.56937 -11.50635 -11.29555 -11.10229 -10.82662 -10.52690 -10.27041 -8.19109 -6.28408 0.04653 1.08405 1.41351 1.41683 1.52664 1.58324 1.76834 2.07436 2.42221 2.71070 3.00114 3.14967 3.66002 3.81539 3.94946 3.99894 4.18140 4.20827 4.23954 4.50933 4.57857 4.64732 4.69628 4.75378 4.84832 4.85634 4.99364 5.02166 5.08619 5.18492 5.30362 5.53034 5.75237 5.87055 6.26477 6.50854 6.87551 7.06439 7.21707 7.40285 8.92236 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.003167 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.721279 B = 8837.894534 C = 9968.329375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.608 6.608 4 N -0.712 5.712 5 C 0.130 3.870 6 C -0.026 4.026 7 C 0.168 3.832 8 N -0.402 5.402 9 O 0.066 5.934 10 C 0.207 3.793 11 C -0.023 4.023 12 C -0.093 4.093 13 C 0.026 3.974 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.269 1.269 22 N -0.504 5.504 23 H 0.112 0.888 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.424 0.576 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.009 0.991 36 H 0.005 0.995 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.926 -8.322 8.699 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.289 3.711 3 O -0.490 6.490 4 N -0.367 5.367 5 C 0.004 3.996 6 C -0.065 4.065 7 C -0.106 4.106 8 N -0.114 5.114 9 O 0.011 5.989 10 C -0.012 4.012 11 C -0.061 4.061 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.194 1.194 22 N -0.238 5.238 23 H 0.131 0.869 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.263 0.737 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.977 -7.659 9.113 26.769 hybrid contribution 0.862 0.667 -0.373 1.152 sum -23.115 -6.992 8.740 25.682 Atomic orbital electron populations 1.21898 0.87165 1.06485 1.06433 1.21828 0.92689 0.82596 0.73948 1.90747 1.72431 1.33756 1.52063 1.45845 1.05893 1.09884 1.75029 1.20968 0.81440 0.95921 1.01306 1.20158 0.81449 0.97098 1.07766 1.26107 1.00989 1.00142 0.83329 1.74591 0.89664 1.22458 1.24640 1.85281 1.22316 1.66004 1.25334 1.29280 0.97458 0.92801 0.81684 1.20492 0.87220 1.00071 0.98346 1.21436 0.98280 0.93359 1.00101 1.18987 0.92053 0.95595 0.94455 1.21668 1.09181 0.93969 1.33520 0.92829 1.25842 0.96645 1.01278 0.95580 1.70050 1.16786 1.32736 1.37231 0.85567 0.78447 0.80035 0.77730 1.19811 1.20599 1.19355 1.71964 1.00217 1.21812 1.29785 0.86922 0.89232 0.86681 0.73691 0.93156 0.93181 0.85708 0.85541 0.86080 0.86322 0.93284 0.92607 0.97279 0.97707 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.30 71.24 0.73 -0.45 16 2 C 0.50 9.29 7.94 87.66 0.70 9.98 16 3 O -0.61 -19.26 17.10 -3.04 -0.05 -19.31 16 4 N -0.71 -9.64 5.56 -463.05 -2.57 -12.21 16 5 C 0.13 2.61 5.66 86.38 0.49 3.10 16 6 C -0.03 -0.41 5.96 29.85 0.18 -0.24 16 7 C 0.17 4.42 7.47 138.46 1.03 5.45 16 8 N -0.40 -11.84 12.16 -60.31 -0.73 -12.57 16 9 O 0.07 2.00 11.31 74.85 0.85 2.85 16 10 C 0.21 6.23 7.77 88.38 0.69 6.92 16 11 C -0.02 -0.66 5.84 29.85 0.17 -0.49 16 12 C -0.09 -3.59 5.14 30.59 0.16 -3.43 16 13 C 0.03 1.30 4.97 29.85 0.15 1.44 16 14 C -0.55 -30.56 9.11 25.60 0.23 -30.32 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -55.05 13.29 21.44 0.28 -54.77 16 18 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 N -0.50 -15.23 11.55 -303.18 -3.50 -18.73 16 23 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 26 H 0.42 1.81 8.47 -92.70 -0.79 1.03 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -76.70 327.80 1.58 -75.12 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: 0.29 Total: 0.62 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 4.99 Total: -7.30 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -6.52 Total: -98.28 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.79 Total: -16.46 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.70 1.58 -75.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346518258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.041 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds