Wall clock time and date at job start Mon Mar 30 2020 00:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21282 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 O 1.42903 * 109.46631 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99587 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.46972 * 180.02562 * 17 16 15 19 19 N 1.30506 * 125.64760 * 269.69048 * 18 17 16 20 20 C 1.34127 * 109.25530 * 179.89381 * 19 18 17 21 21 C 1.34665 * 108.02142 * 0.37307 * 20 19 18 22 22 N 1.35042 * 125.65341 * 89.99947 * 18 17 16 23 23 C 1.46504 * 126.39461 * 359.94598 * 22 18 17 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 30 30 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 31 31 H 1.08998 * 109.47233 * 300.00048 * 17 16 15 32 32 H 1.08997 * 109.47326 * 60.00133 * 17 16 15 33 33 H 1.07994 * 125.99029 * 180.11936 * 20 19 18 34 34 H 1.08004 * 126.59724 * 179.74237 * 21 20 19 35 35 H 1.09001 * 109.47334 * 89.99581 * 23 22 18 36 36 H 1.08997 * 109.47067 * 209.99694 * 23 22 18 37 37 H 1.08999 * 109.46940 * 329.99729 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8590 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 8 2.6975 0.1900 -4.6815 17 6 3.1632 -0.3858 -5.9036 18 6 3.1743 0.6665 -6.9824 19 7 2.1858 0.9384 -7.7899 20 6 2.5493 1.9310 -8.6155 21 6 3.8138 2.2820 -8.3135 22 7 4.2108 1.4802 -7.2775 23 6 5.5162 1.5012 -6.6128 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 3.6480 -1.1211 -3.3986 30 1 1.9760 -1.5503 -3.8327 31 1 4.1729 -0.7713 -5.7622 32 1 2.5011 -1.2004 -6.1970 33 1 1.9369 2.3688 -9.3898 34 1 4.4021 3.0485 -8.7963 35 1 6.1930 0.8131 -7.1194 36 1 5.9275 2.5098 -6.6516 37 1 5.3993 1.1962 -5.5729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347347152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:57 Heat of formation + Delta-G solvation = -16.341952 kcal Electronic energy + Delta-G solvation = -19690.800892 eV Core-core repulsion = 16469.848229 eV Total energy + Delta-G solvation = -3220.952663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.19600 -39.08130 -37.37275 -34.72954 -34.16740 -32.40834 -31.10236 -29.44825 -27.59435 -27.01164 -25.60316 -25.23012 -21.53741 -21.25218 -20.16810 -19.44545 -17.60557 -17.08020 -16.82665 -16.15702 -15.72884 -15.53008 -15.02548 -14.70054 -14.41272 -14.01650 -13.60758 -13.46390 -13.11008 -12.95355 -12.75880 -12.42650 -12.16473 -11.75423 -11.62217 -11.11478 -10.94300 -10.72062 -10.32751 -10.23966 -10.09622 -9.79391 -9.74931 -9.05271 -9.00501 -8.58938 -8.55501 -7.92798 -6.12953 -4.22704 1.75578 2.58179 2.87745 3.23433 3.29948 3.31932 3.35672 3.54645 4.17688 4.34478 4.47921 4.57022 4.73272 4.85389 4.90886 5.10523 5.16007 5.19040 5.22394 5.30232 5.38880 5.49428 5.60777 6.09835 6.61330 6.82250 6.90687 6.98519 7.01701 7.15877 7.44965 7.56668 7.69056 7.91570 7.97360 8.14786 8.63825 8.77528 9.11386 9.44812 10.93044 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042036 B = 0.003210 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.934887 B = 8721.128635 C = 8899.017852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.708 5.708 13 C 0.501 3.499 14 O -0.533 6.533 15 C 0.043 3.957 16 O -0.355 6.355 17 C 0.146 3.854 18 C 0.208 3.792 19 N -0.472 5.472 20 C -0.029 4.029 21 C -0.053 4.053 22 N -0.450 5.450 23 C 0.068 3.932 24 H 0.015 0.985 25 H 0.027 0.973 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -3.222 -18.223 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.410 6.410 15 C -0.037 4.037 16 O -0.272 6.272 17 C 0.068 3.932 18 C -0.054 4.054 19 N -0.192 5.192 20 C -0.178 4.178 21 C -0.187 4.187 22 N -0.133 5.133 23 C -0.074 4.074 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.189 0.811 34 H 0.193 0.807 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.501 -2.428 -17.977 20.034 hybrid contribution 1.321 -0.650 0.790 1.671 sum 9.822 -3.079 -17.187 20.034 Atomic orbital electron populations 1.22089 0.98391 0.99181 1.01022 1.18756 0.91092 0.93992 0.79692 0.93341 1.21211 1.32566 1.13247 0.90282 0.92023 1.24903 0.94833 0.94945 0.99083 1.69911 1.35806 1.22368 1.23917 0.86433 0.79125 0.79257 0.82171 1.20527 1.19869 1.21070 1.46438 1.65664 1.13558 1.10154 1.20009 0.79544 0.87769 0.84252 1.90700 1.49765 1.15859 1.84682 1.22381 1.01469 0.92682 0.87194 1.88128 1.87057 1.35263 1.16744 1.20499 0.99637 0.91302 0.81792 1.22669 0.84566 0.98126 1.00067 1.70223 1.26536 1.15784 1.06656 1.22334 0.94413 0.98531 1.02493 1.22747 0.98907 1.01264 0.95776 1.45282 1.13374 1.27885 1.26801 1.22119 0.81915 1.04351 0.99053 0.96541 0.95399 0.89105 0.92530 0.77900 0.90660 0.90368 0.91730 0.89791 0.81103 0.80684 0.90424 0.89333 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.27 6.83 2.56 -69.09 -0.18 6.65 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.71 -14.64 5.07 -54.93 -0.28 -14.92 16 13 C 0.50 10.27 7.87 -10.98 -0.09 10.19 16 14 O -0.53 -13.74 16.16 -14.35 -0.23 -13.97 16 15 C 0.04 0.62 6.42 36.01 0.23 0.85 16 16 O -0.36 -5.81 9.86 -55.14 -0.54 -6.35 16 17 C 0.15 1.76 6.03 36.01 0.22 1.98 16 18 C 0.21 2.88 7.53 -155.41 -1.17 1.71 16 19 N -0.47 -7.34 11.25 -10.82 -0.12 -7.46 16 20 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 21 C -0.05 -0.56 11.58 -16.56 -0.19 -0.75 16 22 N -0.45 -5.08 3.15 -121.27 -0.38 -5.46 16 23 C 0.07 0.49 10.79 59.85 0.65 1.14 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.55 7.70 -51.93 -0.40 0.15 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -36.26 322.31 -7.09 -43.35 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.20 Total: 3.78 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.79 Total: 5.06 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.15 Total: -52.19 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.78 Total: -20.32 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.26 -7.09 -43.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347347152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.012 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds