Wall clock time and date at job start Mon Mar 30 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46897 * 2 1 4 4 O 1.41607 * 119.99981 * 254.99812 * 3 2 1 5 5 C 1.42905 * 113.99703 * 270.00049 * 4 3 2 6 6 C 1.34777 * 120.00147 * 74.99989 * 3 2 1 7 7 O 1.21603 * 120.00160 * 0.02562 * 6 3 2 8 8 C 1.47429 * 120.00013 * 179.97438 * 6 3 2 9 9 C 1.41293 * 126.41485 * 0.02562 * 8 6 3 10 10 N 1.30448 * 108.02361 * 179.71995 * 9 8 6 11 11 N 1.39944 * 108.89724 * 0.40720 * 10 9 8 12 12 C 1.46491 * 125.75406 * 179.85047 * 11 10 9 13 13 C 1.50702 * 109.46957 * 269.68786 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.34263 * 108.48668 * 359.58371 * 11 10 9 22 22 C 1.50694 * 126.28562 * 180.22136 * 21 11 10 23 23 H 1.08998 * 109.47186 * 300.00415 * 1 2 3 24 24 H 1.09000 * 109.46730 * 60.00124 * 1 2 3 25 25 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47305 * 240.00032 * 2 1 3 27 27 H 1.08998 * 109.47379 * 119.99508 * 2 1 3 28 28 H 1.08998 * 109.46917 * 60.00345 * 5 4 3 29 29 H 1.09000 * 109.46504 * 179.97438 * 5 4 3 30 30 H 1.08991 * 109.47303 * 299.99648 * 5 4 3 31 31 H 1.07999 * 125.98923 * 359.95357 * 9 8 6 32 32 H 1.09004 * 109.47166 * 149.69052 * 12 11 10 33 33 H 1.08994 * 109.47507 * 29.68759 * 12 11 10 34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.47253 * 90.00157 * 22 21 11 36 36 H 1.09009 * 109.47074 * 210.00037 * 22 21 11 37 37 H 1.09002 * 109.47486 * 330.00194 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.5535 1.9430 -1.1846 5 6 3.9621 1.7532 -1.3328 6 6 1.9581 2.1173 1.1274 7 8 1.4989 1.6348 2.1448 8 6 2.4500 3.5071 1.1275 9 6 3.0070 4.1998 0.0292 10 7 3.3142 5.4041 0.4253 11 7 2.9820 5.5347 1.7785 12 6 3.1741 6.7357 2.5949 13 6 4.5338 6.6902 3.2432 14 1 5.1894 5.8508 3.0645 15 6 4.9433 7.7233 4.0595 16 7 6.1320 7.6861 4.6209 17 14 3.8095 9.1754 4.3681 18 1 2.9651 8.9000 5.5582 19 1 4.6218 10.3951 4.6090 20 1 2.9405 9.3857 3.1824 21 6 2.4521 4.3755 2.2006 22 6 1.9521 4.0773 3.5905 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 4.1848 0.6864 -1.3536 29 1 4.2944 2.2116 -2.2642 30 1 4.4814 2.2165 -0.4940 31 1 3.1497 3.8030 -0.9651 32 1 2.4050 6.7776 3.3663 33 1 3.1026 7.6204 1.9623 34 1 6.4199 8.4127 5.1954 35 1 0.8956 4.3364 3.6600 36 1 2.0805 3.0158 3.8029 37 1 2.5183 4.6637 4.3140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352998124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:47 Heat of formation + Delta-G solvation = 47.537718 kcal Electronic energy + Delta-G solvation = -20775.177933 eV Core-core repulsion = 17556.995300 eV Total energy + Delta-G solvation = -3218.182633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87189 -39.18257 -37.24262 -34.04045 -33.78591 -32.17650 -31.30897 -30.09638 -27.92671 -26.76083 -26.41718 -23.93183 -22.74108 -21.44883 -20.02361 -19.04470 -17.51149 -17.21067 -16.48657 -15.85405 -15.60069 -14.92446 -14.61460 -14.42131 -14.06369 -13.85544 -13.72757 -13.14415 -12.84730 -12.65707 -12.57513 -12.24793 -12.21586 -12.02752 -11.88096 -11.56010 -11.25184 -11.14926 -10.84165 -10.60132 -10.38801 -10.15692 -9.79529 -9.43512 -8.99276 -8.85249 -8.59603 -7.94403 -6.33309 -4.37971 1.93029 2.08044 2.76908 3.09532 3.15408 3.19119 3.28567 3.78634 4.15809 4.25411 4.93636 4.95835 5.12123 5.14761 5.18959 5.23570 5.27682 5.32233 5.51339 5.55165 5.64046 5.73590 5.84573 5.98229 6.02590 6.16621 6.27728 6.44218 6.46869 6.57585 6.62700 7.09554 7.18895 7.57275 7.60195 8.20202 8.29195 8.41463 8.69943 9.20843 10.78917 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.004860 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.102881 B = 5760.457717 C = 6120.198478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.481 5.481 4 O -0.142 6.142 5 C -0.015 4.015 6 C 0.614 3.386 7 O -0.536 6.536 8 C -0.331 4.331 9 C 0.067 3.933 10 N -0.299 5.299 11 N -0.314 5.314 12 C 0.224 3.776 13 C -0.546 4.546 14 H 0.081 0.919 15 C 0.082 3.918 16 N -0.883 5.883 17 Si 0.872 3.128 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.263 1.263 21 C 0.169 3.831 22 C -0.100 4.100 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.189 0.811 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.270 0.730 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 -12.416 -9.111 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.261 5.261 4 O -0.146 6.146 5 C -0.113 4.113 6 C 0.408 3.592 7 O -0.415 6.415 8 C -0.347 4.347 9 C -0.120 4.120 10 N -0.118 5.118 11 N -0.090 5.090 12 C 0.106 3.894 13 C -0.584 4.584 14 H 0.099 0.901 15 C -0.123 4.123 16 N -0.520 5.520 17 Si 0.698 3.302 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.188 1.188 21 C 0.032 3.968 22 C -0.158 4.158 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.206 0.794 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.268 -11.160 -8.857 16.473 hybrid contribution -0.266 0.041 0.212 0.343 sum -8.534 -11.119 -8.645 16.468 Atomic orbital electron populations 1.22126 0.95101 1.02133 1.03223 1.21582 0.95127 0.80326 1.02865 1.49969 1.59997 1.12820 1.03318 1.90593 1.22592 1.74683 1.26777 1.23470 0.82757 1.01717 1.03362 1.17408 0.76670 0.84597 0.80512 1.90735 1.48021 1.72819 1.29902 1.19573 1.23388 0.96256 0.95456 1.24381 0.97005 0.91227 0.99402 1.77186 1.22936 1.19703 0.91998 1.48920 1.41521 1.11257 1.07340 1.20142 0.99207 0.80615 0.89486 1.21103 0.99039 1.08834 1.29382 0.90053 1.24792 0.95131 0.97685 0.94722 1.69863 1.18424 1.33015 1.30672 0.86903 0.81157 0.82604 0.79517 1.19476 1.20369 1.18763 1.21455 0.93047 0.86119 0.96190 1.20647 1.00931 1.04621 0.89610 0.91344 0.92228 0.91530 0.89919 0.90053 0.93003 0.87480 0.91918 0.79434 0.93449 0.92696 0.91974 0.90417 0.88487 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.04 37.16 0.37 -1.33 16 2 C 0.12 1.31 6.38 -4.04 -0.03 1.28 16 3 N -0.48 -6.75 3.02 -61.38 -0.19 -6.94 16 4 O -0.14 -1.82 8.98 -11.47 -0.10 -1.92 16 5 C -0.02 -0.15 9.83 101.05 0.99 0.84 16 6 C 0.61 10.64 7.55 -12.52 -0.09 10.55 16 7 O -0.54 -9.97 13.91 5.27 0.07 -9.89 16 8 C -0.33 -6.34 6.10 -105.07 -0.64 -6.98 16 9 C 0.07 1.24 9.77 -16.98 -0.17 1.08 16 10 N -0.30 -6.54 12.50 30.86 0.39 -6.16 16 11 N -0.31 -7.09 3.56 -57.78 -0.21 -7.29 16 12 C 0.22 5.27 4.85 -5.20 -0.03 5.25 16 13 C -0.55 -14.96 9.94 -34.44 -0.34 -15.30 16 14 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 16 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 17 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C 0.17 3.47 7.01 -81.60 -0.57 2.89 16 22 C -0.10 -1.77 9.34 36.00 0.34 -1.44 16 23 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.89 7.90 -51.93 -0.41 0.48 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.76 7.11 -51.93 -0.37 0.40 16 31 H 0.19 2.88 4.70 -52.49 -0.25 2.63 16 32 H 0.05 1.02 7.06 -51.93 -0.37 0.66 16 33 H 0.06 1.30 7.19 -51.93 -0.37 0.92 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.69 6.50 -51.92 -0.34 1.36 16 37 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -31.84 311.16 -4.51 -36.36 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.01 Total: 2.13 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.26 Total: -1.03 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.77 Total: -45.44 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.03 Total: -11.82 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.84 -4.51 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352998124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.895 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds