Wall clock time and date at job start Mon Mar 30 2020 00:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99757 * 2 1 4 4 C 1.52994 * 109.46836 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47268 * 65.00020 * 4 3 2 6 6 C 1.37098 * 119.99746 * 264.54717 * 5 4 3 7 7 H 1.08003 * 119.99992 * 145.65465 * 6 5 4 8 8 C 1.38952 * 120.00070 * 325.64716 * 6 5 4 9 9 N 1.31407 * 120.00433 * 338.16601 * 8 6 5 10 10 Si 1.86806 * 119.99813 * 158.15838 * 8 6 5 11 11 H 1.48495 * 109.46832 * 90.00451 * 10 8 6 12 12 H 1.48497 * 109.47210 * 210.00494 * 10 8 6 13 13 H 1.48500 * 109.47129 * 330.00561 * 10 8 6 14 14 C 1.34778 * 119.99966 * 84.55306 * 5 4 3 15 15 O 1.21283 * 120.00173 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99887 * 180.02562 * 14 5 4 17 17 C 1.50698 * 109.47424 * 179.97438 * 16 14 5 18 18 C 1.34667 * 126.59176 * 84.95151 * 17 16 14 19 19 N 1.34123 * 108.02189 * 180.02562 * 18 17 16 20 20 C 1.30498 * 109.25683 * 359.72532 * 19 18 17 21 21 N 1.35050 * 108.69966 * 0.44402 * 20 19 18 22 22 C 1.46497 * 126.40104 * 179.82194 * 21 20 19 23 23 H 1.08995 * 109.47261 * 60.00739 * 1 2 3 24 24 H 1.09002 * 109.46770 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47428 * 300.00027 * 1 2 3 26 26 H 1.09001 * 109.47199 * 59.99673 * 3 2 1 27 27 H 1.08996 * 109.46790 * 299.99939 * 3 2 1 28 28 H 1.09003 * 109.47335 * 304.99384 * 4 3 2 29 29 H 1.09004 * 109.46955 * 185.00269 * 4 3 2 30 30 H 0.96997 * 120.00726 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47296 * 59.99082 * 16 14 5 32 32 H 1.09008 * 109.47144 * 299.99546 * 16 14 5 33 33 H 1.07997 * 125.98791 * 0.04217 * 18 17 16 34 34 H 1.08001 * 125.65372 * 180.29203 * 20 19 18 35 35 H 1.08999 * 109.47258 * 269.69409 * 22 21 20 36 36 H 1.08993 * 109.47028 * 149.68931 * 22 21 20 37 37 H 1.09009 * 109.46844 * 29.69011 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2045 -0.7862 -1.3051 7 1 3.9850 -1.3365 -2.2082 8 6 4.7190 -1.4473 -0.1965 9 7 5.3776 -0.7763 0.7215 10 14 4.4744 -3.2899 -0.0110 11 1 5.6055 -4.0065 -0.6530 12 1 4.4216 -3.6396 1.4312 13 1 3.2015 -3.6885 -0.6639 14 6 4.1557 1.3218 -2.3530 15 8 3.9528 2.5166 -2.3067 16 6 4.6080 0.6836 -3.6411 17 6 4.7312 1.7399 -4.7089 18 6 5.7964 2.5320 -4.9354 19 7 5.5053 3.3329 -5.9711 20 6 4.3022 3.0632 -6.3988 21 7 3.7815 2.0790 -5.6346 22 6 2.4512 1.4815 -5.7741 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9784 2.1766 0.0890 30 1 5.7365 -1.2376 1.4956 31 1 3.8781 -0.0637 -3.9523 32 1 5.5757 0.2053 -3.4895 33 1 6.7229 2.5236 -4.3805 34 1 3.8044 3.5485 -7.2252 35 1 1.7390 2.0330 -5.1603 36 1 2.4837 0.4421 -5.4478 37 1 2.1411 1.5250 -6.8183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468722158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:21 Heat of formation + Delta-G solvation = -28.080288 kcal Electronic energy + Delta-G solvation = -21038.053645 eV Core-core repulsion = 17816.591969 eV Total energy + Delta-G solvation = -3221.461676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.94887 -40.43659 -38.54702 -36.58007 -34.88651 -33.48858 -33.12876 -30.88090 -27.97483 -27.71216 -27.24329 -26.38175 -23.76041 -22.29166 -21.34421 -20.63401 -18.79775 -18.04133 -17.68790 -17.14829 -16.95721 -16.45699 -16.15938 -16.08188 -15.79413 -15.54309 -14.81500 -14.53586 -14.38849 -13.87909 -13.73190 -13.61159 -13.41760 -13.26794 -12.98304 -12.88761 -12.63290 -12.49807 -12.40822 -12.08238 -11.78204 -11.00774 -10.91221 -10.57006 -10.48494 -10.29468 -9.45862 -9.21488 -8.24058 -5.93893 1.14339 1.45219 1.53197 1.63610 1.98560 2.06591 2.24483 2.39032 2.96480 3.04304 3.24302 3.79855 3.94435 4.03148 4.20325 4.25410 4.26586 4.39716 4.49234 4.53092 4.54740 4.61683 4.63651 4.68030 4.78392 4.82126 4.90090 4.97356 5.37287 5.46659 5.55027 5.81612 6.01016 6.39620 6.42114 6.46153 7.16614 7.20681 7.63910 8.05468 8.79470 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.006525 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.645856 B = 4289.917501 C = 4864.973174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.067 3.933 4 C 0.111 3.889 5 N -0.436 5.436 6 C -0.337 4.337 7 H 0.098 0.902 8 C 0.009 3.991 9 N -0.894 5.894 10 Si 0.977 3.023 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.263 1.263 14 C 0.458 3.542 15 O -0.632 6.632 16 C -0.035 4.035 17 C 0.003 3.997 18 C -0.049 4.049 19 N -0.533 5.533 20 C 0.179 3.821 21 N -0.458 5.458 22 C 0.067 3.933 23 H 0.040 0.960 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.270 0.730 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.157 0.843 34 H 0.246 0.754 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 -1.572 -7.853 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.013 4.013 5 N -0.154 5.154 6 C -0.464 4.464 7 H 0.116 0.884 8 C -0.193 4.193 9 N -0.532 5.532 10 Si 0.801 3.199 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.187 1.187 14 C 0.248 3.752 15 O -0.520 6.520 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.196 4.196 19 N -0.252 5.252 20 C -0.103 4.103 21 N -0.141 5.141 22 C -0.074 4.074 23 H 0.059 0.941 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.174 0.826 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.841 -0.686 -7.965 11.919 hybrid contribution -0.548 -0.947 1.023 1.498 sum -9.388 -1.633 -6.942 11.790 Atomic orbital electron populations 1.22893 0.80643 1.03397 1.00224 1.88065 1.20437 1.27598 1.95292 1.22758 0.94469 0.84617 0.99204 1.21401 0.91413 0.97642 0.90833 1.43540 1.56365 1.07583 1.07894 1.19582 1.42431 0.82175 1.02236 0.88403 1.25995 0.93456 1.03687 0.96198 1.70005 1.31958 1.38816 1.12391 0.85194 0.78989 0.78385 0.77312 1.19783 1.21275 1.18715 1.20822 0.81011 0.86141 0.87218 1.90518 1.58412 1.16551 1.86525 1.19693 1.04597 0.94720 0.88522 1.20765 0.91228 1.03285 0.96051 1.21994 1.00355 0.97705 0.99517 1.70136 1.15538 1.26000 1.13530 1.25618 0.91690 0.92612 1.00353 1.45401 1.14242 1.29629 1.24794 1.22288 0.79646 0.99604 1.05839 0.94130 0.88652 0.93206 0.91913 0.95171 0.88305 0.93039 0.92059 0.87980 0.87313 0.82562 0.73770 0.91154 0.89466 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.95 16 2 O -0.39 -16.00 10.44 -148.98 -1.56 -17.55 16 3 C 0.07 2.75 6.24 71.98 0.45 3.20 16 4 C 0.11 5.39 5.29 86.38 0.46 5.84 16 5 N -0.44 -21.61 2.51 -635.55 -1.60 -23.20 16 6 C -0.34 -16.46 8.48 84.04 0.71 -15.75 16 7 H 0.10 4.45 6.98 -2.91 -0.02 4.43 16 8 C 0.01 0.46 4.93 84.93 0.42 0.87 16 9 N -0.89 -47.11 11.34 21.66 0.25 -46.87 16 10 Si 0.98 39.35 29.61 68.60 2.03 41.39 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 14 C 0.46 21.99 7.59 87.66 0.67 22.66 16 15 O -0.63 -33.77 15.71 -3.04 -0.05 -33.82 16 16 C -0.03 -1.35 4.70 29.10 0.14 -1.21 16 17 C 0.00 0.10 5.45 40.95 0.22 0.33 16 18 C -0.05 -1.96 11.79 83.52 0.98 -0.98 16 19 N -0.53 -20.06 11.25 -200.31 -2.25 -22.31 16 20 C 0.18 5.24 12.56 180.26 2.26 7.51 16 21 N -0.46 -13.89 3.15 -537.89 -1.70 -15.58 16 22 C 0.07 1.38 11.00 127.77 1.41 2.79 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 5.16 5.37 -2.39 -0.01 5.15 16 29 H 0.05 2.59 7.59 -2.39 -0.02 2.58 16 30 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 31 H 0.10 3.51 6.60 -2.39 -0.02 3.49 16 32 H 0.11 4.23 8.10 -2.38 -0.02 4.21 16 33 H 0.16 6.18 8.06 -2.91 -0.02 6.16 16 34 H 0.25 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.74 7.12 -2.39 -0.02 1.73 16 37 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -70.47 317.52 5.16 -65.32 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.06 Total: 25.42 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 8.97 Total: 27.21 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -5.30 Total: -107.97 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -1.60 Total: -51.37 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.39 kcal Total: -70.47 5.16 -65.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468722158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.235 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds