Wall clock time and date at job start Mon Mar 30 2020 00:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.50704 * 109.46834 * 120.00181 * 2 1 3 5 5 H 1.07991 * 119.99857 * 120.00229 * 4 2 1 6 6 C 1.37886 * 119.99693 * 299.99566 * 4 2 1 7 7 N 1.31510 * 119.99950 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99530 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47215 * 59.99862 * 8 6 4 10 10 H 1.48500 * 109.47158 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47251 * 300.00128 * 8 6 4 12 12 C 1.50701 * 109.46955 * 239.99940 * 2 1 3 13 13 O 1.21275 * 119.99632 * 240.00229 * 12 2 1 14 14 N 1.34769 * 119.99690 * 60.00305 * 12 2 1 15 15 C 1.46505 * 119.99686 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.47068 * 324.99893 * 15 14 12 17 17 C 1.53002 * 109.47411 * 84.99974 * 15 14 12 18 18 C 1.50703 * 109.47064 * 204.99925 * 15 14 12 19 19 N 1.30860 * 125.81945 * 315.02218 * 18 15 14 20 20 N 1.40086 * 108.32459 * 180.02562 * 19 18 15 21 21 C 1.46498 * 126.07931 * 179.97438 * 20 19 18 22 22 C 1.35878 * 107.84037 * 359.97438 * 20 19 18 23 23 C 1.35588 * 107.58135 * 359.73745 * 22 20 19 24 24 O 1.36225 * 126.05524 * 180.27403 * 23 22 20 25 25 H 1.09004 * 109.47114 * 299.99993 * 1 2 3 26 26 H 1.09000 * 109.46977 * 59.99486 * 1 2 3 27 27 H 1.08996 * 109.47443 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99281 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00680 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.47407 * 180.02562 * 17 15 14 31 31 H 1.09000 * 109.46986 * 300.00092 * 17 15 14 32 32 H 1.09002 * 109.47075 * 59.99363 * 17 15 14 33 33 H 1.09002 * 109.47347 * 90.02429 * 21 20 19 34 34 H 1.09001 * 109.46642 * 210.01788 * 21 20 19 35 35 H 1.08997 * 109.46919 * 330.01846 * 21 20 19 36 36 H 1.08005 * 126.21464 * 180.02562 * 22 20 19 37 37 H 0.96701 * 114.00142 * 270.17509 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8075 -1.1191 4.0078 10 1 1.8269 -0.4200 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0324 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 2.1955 -0.9402 -3.6507 16 1 3.1949 -1.3321 -3.4612 17 6 1.2520 -2.0945 -3.9949 18 6 2.2461 0.0283 -4.8042 19 7 1.3107 0.8848 -5.1266 20 7 1.7366 1.5984 -6.2543 21 6 0.9880 2.6541 -6.9407 22 6 2.9676 1.1373 -6.5982 23 6 3.3052 0.1695 -5.7106 24 8 4.4668 -0.5421 -5.7035 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7082 1.1609 3.4845 29 1 1.1488 0.5386 -2.5435 30 1 1.6159 -2.6083 -4.8845 31 1 1.2154 -2.7950 -3.1605 32 1 0.2526 -1.7026 -4.1842 33 1 1.2367 3.6203 -6.5016 34 1 1.2513 2.6572 -7.9984 35 1 -0.0810 2.4703 -6.8329 36 1 3.5702 1.4826 -7.4254 37 1 4.4334 -1.3547 -6.2266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472236268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:01 Heat of formation + Delta-G solvation = -5.321183 kcal Electronic energy + Delta-G solvation = -20358.684429 eV Core-core repulsion = 17138.209662 eV Total energy + Delta-G solvation = -3220.474767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44578 -38.75812 -37.07448 -35.27197 -33.62403 -32.64257 -30.87196 -29.58587 -29.26297 -26.54386 -25.04197 -23.66108 -22.19128 -21.47355 -19.82658 -19.20305 -18.12279 -16.70976 -16.16944 -15.85004 -15.56768 -15.29459 -14.48432 -14.37440 -14.21098 -14.03030 -13.64904 -12.94416 -12.89303 -12.86140 -12.49110 -12.13992 -11.85280 -11.69242 -11.36938 -11.01272 -10.91975 -10.66956 -10.58695 -10.35295 -10.15650 -9.87966 -9.47364 -8.88829 -8.53936 -8.45950 -8.34807 -8.21902 -5.94548 -3.97269 1.59159 2.20001 2.42012 3.42460 3.44198 3.50162 3.83970 3.99717 4.09024 4.52579 4.58422 4.63715 4.79002 4.88470 5.12561 5.29749 5.38412 5.50086 5.57793 5.65521 5.85550 6.11216 6.21648 6.40768 6.50253 6.71556 6.73747 6.94697 7.03474 7.17042 7.50725 7.58559 7.64682 7.85427 8.08726 8.25934 8.57018 9.11458 9.35538 9.67729 11.13105 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.004357 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.322991 B = 6425.604902 C = 6833.261480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.546 6.546 14 N -0.737 5.737 15 C 0.224 3.776 16 H 0.104 0.896 17 C -0.154 4.154 18 C 0.060 3.940 19 N -0.269 5.269 20 N -0.374 5.374 21 C 0.107 3.893 22 C 0.029 3.971 23 C -0.036 4.036 24 O -0.466 6.466 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.400 0.600 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 2.585 -21.972 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.422 6.422 14 N -0.392 5.392 15 C 0.117 3.883 16 H 0.122 0.878 17 C -0.213 4.213 18 C -0.108 4.108 19 N -0.092 5.092 20 N -0.159 5.159 21 C -0.034 4.034 22 C -0.117 4.117 23 C -0.092 4.092 24 O -0.270 6.270 25 H 0.111 0.889 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.197 0.803 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.828 3.014 -21.163 21.393 hybrid contribution 0.681 -0.537 0.036 0.868 sum -0.147 2.477 -21.127 21.272 Atomic orbital electron populations 1.21730 0.96536 0.99775 1.00894 1.18863 0.94168 0.96812 0.89296 0.93109 1.21121 1.30845 1.12748 0.88995 0.90787 1.24954 0.95187 0.95093 0.99071 1.69874 1.37199 1.23164 1.23496 0.86510 0.79274 0.79691 0.81658 1.20213 1.21461 1.20226 1.21967 0.78240 0.84273 0.84328 1.90517 1.38043 1.26934 1.86709 1.46349 1.55172 1.32792 1.04841 1.19116 1.00111 0.88741 0.80363 0.87801 1.22139 0.99409 0.97989 1.01811 1.22955 0.91862 0.97467 0.98528 1.77354 1.22188 1.08928 1.00735 1.48285 1.13539 1.30633 1.23394 1.21868 0.97599 0.87894 0.96076 1.22629 0.88819 0.99118 1.01093 1.18026 0.90224 1.01477 0.99493 1.85019 1.29544 1.38786 1.73657 0.88931 0.96886 0.95007 0.93012 0.76611 0.92401 0.90949 0.92282 0.90567 0.89461 0.88997 0.80349 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.60 8.37 -34.44 -0.29 -14.89 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.58 7.11 -10.99 -0.08 12.50 16 13 O -0.55 -14.65 15.12 5.56 0.08 -14.56 16 14 N -0.74 -14.42 4.96 -54.93 -0.27 -14.70 16 15 C 0.22 3.80 3.05 -69.08 -0.21 3.59 16 16 H 0.10 1.92 7.49 -51.93 -0.39 1.53 16 17 C -0.15 -2.31 9.47 37.16 0.35 -1.96 16 18 C 0.06 0.91 6.02 -82.30 -0.50 0.41 16 19 N -0.27 -3.91 12.25 33.72 0.41 -3.50 16 20 N -0.37 -4.11 4.04 -67.85 -0.27 -4.38 16 21 C 0.11 0.65 11.48 59.85 0.69 1.34 16 22 C 0.03 0.30 11.56 -16.71 -0.19 0.11 16 23 C -0.04 -0.47 7.18 -39.82 -0.29 -0.75 16 24 O -0.47 -5.66 13.59 -20.46 -0.28 -5.94 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.26 7.56 -51.93 -0.39 -0.14 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 29 H 0.40 7.40 7.75 -40.82 -0.32 7.08 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.38 2.69 9.07 45.56 0.41 3.10 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -35.47 319.39 -4.73 -40.19 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.29 Total: 6.44 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.52 Total: -0.42 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.49 Total: -47.86 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.19 Total: -20.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.47 -4.73 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472236268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.869 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds