Wall clock time and date at job start Mon Mar 30 2020 01:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00469 * 2 1 4 4 C 1.52993 * 109.47673 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47055 * 65.00176 * 4 3 2 6 6 C 1.36941 * 119.99869 * 270.00340 * 5 4 3 7 7 H 1.08002 * 119.99905 * 142.56773 * 6 5 4 8 8 C 1.38811 * 119.99712 * 322.57060 * 6 5 4 9 9 N 1.31620 * 119.99979 * 157.38109 * 8 6 5 10 10 Si 1.86801 * 120.00195 * 337.37078 * 8 6 5 11 11 H 1.48492 * 109.46861 * 95.37458 * 10 8 6 12 12 H 1.48495 * 109.47056 * 215.37462 * 10 8 6 13 13 H 1.48500 * 109.47023 * 335.37462 * 10 8 6 14 14 C 1.46498 * 120.00300 * 89.99839 * 5 4 3 15 15 C 1.50703 * 109.46981 * 270.14062 * 14 5 4 16 16 N 1.30274 * 126.28664 * 89.63905 * 15 14 5 17 17 N 1.28662 * 109.38077 * 179.72850 * 16 15 14 18 18 C 1.30273 * 109.38152 * 0.44135 * 17 16 15 19 19 C 1.50701 * 126.28279 * 179.82821 * 18 17 16 20 20 C 1.53001 * 117.50050 * 59.68925 * 19 18 17 21 21 C 1.53001 * 60.03175 * 252.52203 * 20 19 18 22 22 O 1.34356 * 107.43719 * 359.56418 * 18 17 16 23 23 H 1.09000 * 109.46678 * 299.99622 * 1 2 3 24 24 H 1.08995 * 109.47110 * 59.99508 * 1 2 3 25 25 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46608 * 59.99907 * 3 2 1 27 27 H 1.09001 * 109.46973 * 300.00787 * 3 2 1 28 28 H 1.09002 * 109.47313 * 305.00260 * 4 3 2 29 29 H 1.08999 * 109.47300 * 184.99803 * 4 3 2 30 30 H 0.97000 * 120.00546 * 179.97438 * 9 8 6 31 31 H 1.08990 * 109.47584 * 150.13235 * 14 5 4 32 32 H 1.09000 * 109.46852 * 30.13435 * 14 5 4 33 33 H 1.08998 * 115.56242 * 205.37710 * 19 18 17 34 34 H 1.08999 * 117.50309 * 145.02266 * 20 19 18 35 35 H 1.09000 * 117.49488 * 0.02562 * 20 19 18 36 36 H 1.08998 * 117.49822 * 107.47788 * 21 20 19 37 37 H 1.08998 * 117.49899 * 252.46981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0978 -0.7976 -1.3345 7 1 3.8253 -1.3090 -2.2460 8 6 4.5707 -1.5203 -0.2478 9 7 4.2853 -2.8001 -0.1342 10 14 5.6123 -0.6765 1.0532 11 1 4.7448 -0.2453 2.1786 12 1 6.6401 -1.6235 1.5551 13 1 6.2799 0.5099 0.4599 14 6 4.2883 1.3997 -2.4131 15 6 3.0433 1.5953 -3.2394 16 7 2.1692 2.5514 -3.1023 17 7 1.2397 2.4094 -3.9805 18 6 1.4843 1.3525 -4.7018 19 6 0.6393 0.8315 -5.8356 20 6 0.4106 1.7592 -7.0305 21 6 -0.7310 1.4789 -6.0512 22 8 2.6312 0.8155 -4.2531 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 4.6160 -3.3053 0.6250 31 1 5.0526 0.9114 -3.0174 32 1 4.6562 2.3686 -2.0755 33 1 0.7291 -0.2359 -6.0372 34 1 0.3500 1.3023 -8.0182 35 1 0.8718 2.7463 -6.9967 36 1 -1.0206 2.2814 -5.3729 37 1 -1.5428 0.8378 -6.3947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473527550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:13 Heat of formation + Delta-G solvation = 55.728556 kcal Electronic energy + Delta-G solvation = -21138.039269 eV Core-core repulsion = 17920.211818 eV Total energy + Delta-G solvation = -3217.827452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.60675 -37.54536 -37.31396 -35.69611 -35.53324 -32.01635 -30.91522 -29.10301 -26.76850 -25.68650 -24.46107 -23.25978 -22.57550 -22.03312 -20.92378 -20.69695 -17.12720 -16.91929 -16.68208 -15.92833 -15.73404 -15.23892 -14.91909 -14.73693 -14.36734 -14.07971 -13.67689 -13.00466 -12.64688 -12.30354 -12.07428 -11.88572 -11.72914 -11.56987 -11.38762 -11.32779 -11.06963 -11.00052 -10.79745 -10.69331 -10.53012 -10.34630 -9.82377 -9.64008 -8.99918 -8.80336 -8.46714 -7.12638 -6.00529 -3.47116 1.66288 2.73617 2.83843 3.30878 3.44330 3.47098 3.69832 4.24353 4.49441 4.56975 4.59059 4.71647 4.83026 4.86086 5.02841 5.34465 5.44279 5.57257 5.67008 5.74185 5.82193 5.89248 5.95316 5.98151 6.00994 6.03950 6.07090 6.12070 6.15935 6.20559 6.30259 6.35742 6.70231 7.86978 8.05356 8.30673 8.82888 8.86126 9.64205 9.91999 11.14091 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.006214 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.725815 B = 4504.978388 C = 4761.015758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.038 3.962 4 C 0.130 3.870 5 N -0.574 5.574 6 C -0.274 4.274 7 H 0.078 0.922 8 C 0.054 3.946 9 N -0.886 5.886 10 Si 0.876 3.124 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.267 1.267 14 C 0.225 3.775 15 C 0.181 3.819 16 N -0.311 5.311 17 N -0.294 5.294 18 C 0.167 3.833 19 C -0.075 4.075 20 C -0.156 4.156 21 C -0.148 4.148 22 O -0.214 6.214 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 8.636 -8.297 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C -0.041 4.041 4 C 0.005 3.995 5 N -0.293 5.293 6 C -0.402 4.402 7 H 0.095 0.905 8 C -0.148 4.148 9 N -0.526 5.526 10 Si 0.706 3.294 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.192 1.192 14 C 0.093 3.907 15 C -0.034 4.034 16 N -0.158 5.158 17 N -0.141 5.141 18 C -0.044 4.044 19 C -0.094 4.094 20 C -0.194 4.194 21 C -0.185 4.185 22 O -0.092 6.092 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.351 9.310 -7.700 13.650 hybrid contribution 0.620 -0.575 0.482 0.973 sum -5.731 8.735 -7.218 12.698 Atomic orbital electron populations 1.22606 0.83741 1.01675 0.98321 1.88253 1.16991 1.26639 1.94898 1.23275 0.96822 0.85182 0.98806 1.21508 0.90889 0.96926 0.90197 1.44128 1.74484 1.04125 1.06607 1.18575 1.40044 0.79129 1.02454 0.90467 1.25249 0.97272 0.94823 0.97466 1.69884 1.43856 1.08357 1.30467 0.86969 0.80903 0.79498 0.82060 1.21188 1.22761 1.19217 1.19612 0.85802 0.97440 0.87830 1.30752 1.01034 0.85187 0.86389 1.74249 1.00884 1.22823 1.17852 1.74145 1.20318 1.15711 1.03928 1.26559 0.86659 0.92079 0.99115 1.19998 0.97448 0.99368 0.92630 1.23118 1.02124 1.00367 0.93780 1.23097 0.90313 1.03098 1.02024 1.84848 1.33808 1.49492 1.41050 0.95439 0.95494 0.90388 0.95245 0.93014 0.91419 0.91953 0.92637 0.88776 0.88926 0.84831 0.87449 0.88119 0.87219 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 101.05 1.11 1.76 16 2 O -0.35 -8.36 10.18 -35.23 -0.36 -8.72 16 3 C 0.04 0.81 6.28 37.15 0.23 1.05 16 4 C 0.13 2.82 4.98 -4.04 -0.02 2.80 16 5 N -0.57 -13.30 2.04 -174.61 -0.36 -13.65 16 6 C -0.27 -7.52 9.42 -15.06 -0.14 -7.66 16 7 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 8 C 0.05 1.53 5.30 -17.43 -0.09 1.44 16 9 N -0.89 -26.82 13.97 55.49 0.78 -26.05 16 10 Si 0.88 21.52 25.06 -169.99 -4.26 17.26 16 11 H -0.28 -6.91 6.66 56.52 0.38 -6.53 16 12 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.22 4.31 6.33 -5.19 -0.03 4.27 16 15 C 0.18 3.63 7.66 -12.94 -0.10 3.53 16 16 N -0.31 -6.30 10.80 32.55 0.35 -5.95 16 17 N -0.29 -5.64 11.84 32.55 0.39 -5.26 16 18 C 0.17 2.98 8.00 -12.94 -0.10 2.87 16 19 C -0.07 -0.96 6.33 -91.73 -0.58 -1.54 16 20 C -0.16 -1.51 10.23 -26.73 -0.27 -1.79 16 21 C -0.15 -1.52 10.15 -26.69 -0.27 -1.79 16 22 O -0.21 -4.33 10.87 5.39 0.06 -4.27 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.11 6.19 -51.93 -0.32 0.79 16 28 H 0.07 1.61 3.27 -51.93 -0.17 1.44 16 29 H 0.06 1.14 7.89 -51.93 -0.41 0.73 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 32 H 0.09 1.49 7.90 -51.93 -0.41 1.08 16 33 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.27 7.92 -51.93 -0.41 0.86 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -33.29 314.04 -4.05 -37.34 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.10 Total: -0.39 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.27 Total: 4.95 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 1.16 Total: -50.90 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.30 Total: -12.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.26 Total: 17.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.29 -4.05 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473527550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.068 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds