Wall clock time and date at job start Mon Mar 30 2020 01:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00469 * 2 1 4 4 C 1.52993 * 109.47673 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47055 * 65.00176 * 4 3 2 6 6 C 1.36941 * 119.99869 * 270.00340 * 5 4 3 7 7 H 1.08002 * 119.99905 * 142.56773 * 6 5 4 8 8 C 1.38811 * 119.99712 * 322.57060 * 6 5 4 9 9 N 1.31620 * 119.99979 * 157.38109 * 8 6 5 10 10 Si 1.86801 * 120.00195 * 337.37078 * 8 6 5 11 11 H 1.48492 * 109.46861 * 95.37458 * 10 8 6 12 12 H 1.48495 * 109.47056 * 215.37462 * 10 8 6 13 13 H 1.48500 * 109.47023 * 335.37462 * 10 8 6 14 14 C 1.46498 * 120.00300 * 89.99839 * 5 4 3 15 15 C 1.50703 * 109.46981 * 270.14062 * 14 5 4 16 16 N 1.30274 * 126.28664 * 89.63905 * 15 14 5 17 17 N 1.28662 * 109.38077 * 179.72850 * 16 15 14 18 18 C 1.30273 * 109.38152 * 0.44135 * 17 16 15 19 19 C 1.50701 * 126.28279 * 179.82821 * 18 17 16 20 20 C 1.53001 * 117.50050 * 59.68925 * 19 18 17 21 21 C 1.53001 * 60.03175 * 252.52203 * 20 19 18 22 22 O 1.34356 * 107.43719 * 359.56418 * 18 17 16 23 23 H 1.09000 * 109.46678 * 299.99622 * 1 2 3 24 24 H 1.08995 * 109.47110 * 59.99508 * 1 2 3 25 25 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46608 * 59.99907 * 3 2 1 27 27 H 1.09001 * 109.46973 * 300.00787 * 3 2 1 28 28 H 1.09002 * 109.47313 * 305.00260 * 4 3 2 29 29 H 1.08999 * 109.47300 * 184.99803 * 4 3 2 30 30 H 0.97000 * 120.00546 * 179.97438 * 9 8 6 31 31 H 1.08990 * 109.47584 * 150.13235 * 14 5 4 32 32 H 1.09000 * 109.46852 * 30.13435 * 14 5 4 33 33 H 1.08998 * 115.56242 * 205.37710 * 19 18 17 34 34 H 1.08999 * 117.50309 * 145.02266 * 20 19 18 35 35 H 1.09000 * 117.49488 * 0.02562 * 20 19 18 36 36 H 1.08998 * 117.49822 * 107.47788 * 21 20 19 37 37 H 1.08998 * 117.49899 * 252.46981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0978 -0.7976 -1.3345 7 1 3.8253 -1.3090 -2.2460 8 6 4.5707 -1.5203 -0.2478 9 7 4.2853 -2.8001 -0.1342 10 14 5.6123 -0.6765 1.0532 11 1 4.7448 -0.2453 2.1786 12 1 6.6401 -1.6235 1.5551 13 1 6.2799 0.5099 0.4599 14 6 4.2883 1.3997 -2.4131 15 6 3.0433 1.5953 -3.2394 16 7 2.1692 2.5514 -3.1023 17 7 1.2397 2.4094 -3.9805 18 6 1.4843 1.3525 -4.7018 19 6 0.6393 0.8315 -5.8356 20 6 0.4106 1.7592 -7.0305 21 6 -0.7310 1.4789 -6.0512 22 8 2.6312 0.8155 -4.2531 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 4.6160 -3.3053 0.6250 31 1 5.0526 0.9114 -3.0174 32 1 4.6562 2.3686 -2.0755 33 1 0.7291 -0.2359 -6.0372 34 1 0.3500 1.3023 -8.0182 35 1 0.8718 2.7463 -6.9967 36 1 -1.0206 2.2814 -5.3729 37 1 -1.5428 0.8378 -6.3947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473527550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:13 Heat of formation + Delta-G solvation = 28.987454 kcal Electronic energy + Delta-G solvation = -21139.198850 eV Core-core repulsion = 17920.211818 eV Total energy + Delta-G solvation = -3218.987033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.09856 -39.16802 -38.34453 -37.43049 -37.05055 -34.00359 -32.52162 -30.73175 -28.44224 -27.29952 -25.79079 -25.04983 -23.69603 -23.31805 -22.44486 -22.14197 -18.88723 -18.40307 -18.27206 -17.62367 -17.26559 -16.76082 -16.45989 -16.13017 -15.88697 -15.54689 -15.34468 -14.80738 -14.22852 -13.80659 -13.57038 -13.44891 -13.15167 -13.08410 -12.91932 -12.66969 -12.45072 -12.42119 -12.28497 -12.12432 -11.92776 -11.78013 -11.57572 -11.49149 -10.69094 -10.54007 -10.14948 -9.03453 -8.15197 -5.60189 0.22116 1.33290 1.37722 1.41197 1.47841 1.57705 2.47304 2.76162 2.90483 3.00525 3.05827 3.37452 3.50929 3.66754 3.84696 3.97920 4.20869 4.27286 4.30979 4.40778 4.44578 4.49382 4.56395 4.61522 4.65802 4.68955 4.71070 4.72950 4.84801 4.88179 5.00182 5.05440 5.19514 5.89717 6.15710 6.42833 6.86449 7.35319 7.55900 7.90078 9.03805 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.006214 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.725815 B = 4504.978388 C = 4761.015758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.585 5.585 6 C -0.256 4.256 7 H 0.028 0.972 8 C -0.003 4.003 9 N -0.942 5.942 10 Si 0.944 3.056 11 H -0.279 1.279 12 H -0.309 1.309 13 H -0.239 1.239 14 C 0.224 3.776 15 C 0.166 3.834 16 N -0.315 5.315 17 N -0.315 5.315 18 C 0.176 3.824 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.136 4.136 22 O -0.236 6.236 23 H 0.055 0.945 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.262 0.738 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 10.775 -8.754 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.040 4.040 4 C -0.002 4.002 5 N -0.305 5.305 6 C -0.385 4.385 7 H 0.046 0.954 8 C -0.201 4.201 9 N -0.584 5.584 10 Si 0.772 3.228 11 H -0.207 1.207 12 H -0.238 1.238 13 H -0.162 1.162 14 C 0.095 3.905 15 C -0.048 4.048 16 N -0.162 5.162 17 N -0.161 5.161 18 C -0.035 4.035 19 C -0.130 4.130 20 C -0.168 4.168 21 C -0.173 4.173 22 O -0.115 6.115 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.744 11.522 -8.178 15.656 hybrid contribution 0.564 -1.218 0.459 1.418 sum -6.180 10.304 -7.719 14.281 Atomic orbital electron populations 1.22723 0.81674 1.02387 0.99552 1.88185 1.19538 1.28564 1.95209 1.23316 0.96519 0.84373 0.99764 1.21696 0.91523 0.98372 0.88613 1.44116 1.75220 1.02880 1.08301 1.18272 1.38488 0.81297 1.00483 0.95385 1.25913 0.98613 0.95322 1.00221 1.70032 1.46036 1.10451 1.31874 0.85876 0.78713 0.78954 0.79293 1.20690 1.23786 1.16218 1.19909 0.85527 0.98640 0.86452 1.30665 1.01549 0.85544 0.87089 1.74173 1.01002 1.22944 1.18085 1.74102 1.20537 1.16870 1.04634 1.27601 0.85718 0.91093 0.99121 1.20441 0.98874 1.00620 0.93063 1.23261 1.00305 0.99129 0.94142 1.23231 0.90118 1.02488 1.01478 1.84846 1.34988 1.50153 1.41549 0.92607 0.95642 0.90094 0.92458 0.93618 0.93371 0.87774 0.92934 0.88221 0.85078 0.83724 0.84052 0.88899 0.88740 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.24 11.01 113.37 1.25 2.49 16 2 O -0.40 -18.84 10.18 -148.98 -1.52 -20.36 16 3 C 0.04 1.58 6.28 71.98 0.45 2.03 16 4 C 0.12 5.05 4.98 86.38 0.43 5.48 16 5 N -0.58 -26.58 2.04 -706.35 -1.44 -28.02 16 6 C -0.26 -14.36 9.42 84.03 0.79 -13.57 16 7 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 8 C 0.00 -0.19 5.30 84.86 0.45 0.26 16 9 N -0.94 -59.10 13.97 21.65 0.30 -58.80 16 10 Si 0.94 44.49 25.06 68.60 1.72 46.21 16 11 H -0.28 -12.85 6.66 99.48 0.66 -12.19 16 12 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 13 H -0.24 -10.06 7.11 99.48 0.71 -9.35 16 14 C 0.22 8.31 6.33 85.63 0.54 8.86 16 15 C 0.17 6.61 7.66 88.34 0.68 7.29 16 16 N -0.32 -12.54 10.80 -165.49 -1.79 -14.32 16 17 N -0.32 -11.97 11.84 -165.51 -1.96 -13.93 16 18 C 0.18 6.21 8.00 88.34 0.71 6.91 16 19 C -0.11 -2.67 6.33 -11.51 -0.07 -2.74 16 20 C -0.13 -2.18 10.23 30.59 0.31 -1.86 16 21 C -0.14 -2.47 10.15 30.62 0.31 -2.16 16 22 O -0.24 -9.68 10.87 -3.63 -0.04 -9.72 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 1.91 6.19 -2.39 -0.01 1.89 16 28 H 0.05 2.19 3.27 -2.39 -0.01 2.18 16 29 H 0.10 3.38 7.89 -2.39 -0.02 3.36 16 30 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.10 3.53 8.04 -2.39 -0.02 3.51 16 32 H 0.13 3.80 7.90 -2.39 -0.02 3.79 16 33 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.04 7.92 -2.39 -0.02 2.03 16 37 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.15 314.04 2.15 -72.99 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.03 Total: 12.98 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.85 Total: 12.98 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -4.89 Total: -115.07 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.56 Total: -30.08 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.72 Total: 46.21 kcal Total: -75.15 2.15 -72.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473527550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.979 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds