Wall clock time and date at job start Mon Mar 30 2020 00:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 N 1.46498 * 109.47384 * 185.00120 * 4 2 1 6 6 C 1.36936 * 120.00096 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00177 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99697 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00209 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47016 * 89.99920 * 10 8 6 12 12 H 1.48495 * 109.47075 * 210.00051 * 10 8 6 13 13 H 1.48494 * 109.46878 * 329.99893 * 10 8 6 14 14 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 15 15 C 1.34780 * 119.99566 * 275.00168 * 14 2 1 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 2 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 2 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 15 20 20 C 1.41380 * 126.80195 * 124.70720 * 19 18 17 21 21 C 1.35454 * 103.98388 * 179.89284 * 20 19 18 22 22 O 1.34037 * 106.44750 * 0.36909 * 21 20 19 23 23 N 1.20923 * 111.56743 * 359.75103 * 22 21 20 24 24 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 25 25 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 26 26 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46598 * 305.00003 * 4 2 1 28 28 H 1.09001 * 109.47457 * 64.99435 * 4 2 1 29 29 H 0.97003 * 119.99635 * 359.97438 * 5 4 2 30 30 H 0.97008 * 119.99764 * 180.02562 * 9 8 6 31 31 H 0.96995 * 120.00423 * 94.99474 * 14 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 33 33 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 34 34 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 35 35 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 36 36 H 1.08005 * 128.00840 * 0.02932 * 20 19 18 37 37 H 1.08007 * 126.77338 * 180.09938 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2070 7 1 3.6466 -1.8445 -3.0515 8 6 5.5672 -1.5378 -2.1516 9 7 6.2218 -1.0428 -1.1226 10 14 6.5000 -2.3726 -3.5382 11 1 6.8616 -1.3656 -4.5679 12 1 7.7356 -2.9950 -2.9991 13 1 5.6441 -3.4206 -4.1499 14 7 2.0184 -0.6907 1.1960 15 6 2.1471 -0.0184 2.3571 16 8 1.8590 1.1584 2.4116 17 6 2.6500 -0.7288 3.5873 18 6 2.7019 0.2543 4.7585 19 6 3.2042 -0.4561 5.9889 20 6 4.3079 -0.0841 6.7904 21 6 4.3415 -1.0292 7.7602 22 8 3.3297 -1.8706 7.5053 23 7 2.7115 -1.5372 6.5210 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6053 -1.7196 -1.2953 28 1 1.7516 -0.1582 -2.1371 29 1 3.9824 -0.4622 -0.4320 30 1 7.1887 -1.1119 -1.0842 31 1 2.2490 -1.6318 1.1524 32 1 1.9778 -1.5511 3.8324 33 1 3.6493 -1.1205 3.3977 34 1 3.3743 1.0764 4.5133 35 1 1.7028 0.6465 4.9483 36 1 4.9695 0.7597 6.6609 37 1 5.0472 -1.0946 8.5752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483149327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:51 Heat of formation + Delta-G solvation = 23.452529 kcal Electronic energy + Delta-G solvation = -19727.965439 eV Core-core repulsion = 16508.738393 eV Total energy + Delta-G solvation = -3219.227045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.04121 -39.55522 -36.35725 -35.24575 -33.62780 -32.33071 -31.57648 -30.87704 -29.81214 -25.82465 -25.35470 -23.25757 -22.67725 -21.32138 -20.42621 -19.92829 -17.99727 -17.65004 -17.22771 -16.64462 -15.81770 -15.49100 -14.98949 -14.67880 -13.98350 -13.72774 -13.56806 -13.43692 -13.08869 -12.76398 -12.28413 -12.25551 -12.20949 -12.04593 -11.66089 -11.56798 -11.01912 -10.92306 -10.83306 -10.46586 -10.15865 -10.06693 -9.78772 -9.76311 -9.49015 -8.93677 -8.66787 -6.98239 -5.80530 -3.10217 1.37523 2.11163 2.96081 3.13996 3.40984 3.46233 3.47806 3.51918 4.08993 4.43138 4.55562 4.90956 5.03096 5.10602 5.12605 5.28813 5.32741 5.49107 5.52222 5.53481 5.62414 5.67787 5.84381 5.94557 6.02537 6.08983 6.10477 6.19168 6.40318 6.48616 6.70663 6.96919 7.65929 7.89311 8.15428 8.37539 8.56573 9.49407 10.05437 10.40989 11.41925 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.004149 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.414754 B = 6747.467280 C = 7999.913611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.086 0.914 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.243 4.243 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.932 5.932 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.710 5.710 15 C 0.517 3.483 16 O -0.552 6.552 17 C -0.137 4.137 18 C -0.024 4.024 19 C 0.021 3.979 20 C -0.229 4.229 21 C -0.063 4.063 22 O 0.096 5.904 23 N -0.365 5.365 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.386 0.614 30 H 0.255 0.745 31 H 0.404 0.596 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 0.389 15.743 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.361 5.361 15 C 0.304 3.696 16 O -0.431 6.431 17 C -0.178 4.178 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.251 4.251 21 C -0.145 4.145 22 O 0.030 5.970 23 N -0.069 5.069 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.239 0.761 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.190 0.810 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.761 0.331 15.300 17.159 hybrid contribution 1.688 -0.155 -0.507 1.769 sum -6.073 0.176 14.793 15.992 Atomic orbital electron populations 1.22096 0.95568 1.01822 1.02091 1.21236 0.93307 0.98005 0.84683 0.89559 1.20986 0.86832 0.96964 0.93631 1.42359 0.99760 1.70280 1.25281 1.19231 0.89458 1.29488 0.99241 0.91125 1.24747 0.96422 1.01548 0.98080 1.69671 1.07227 1.50842 1.30273 0.86181 0.79480 0.79001 0.81455 1.21691 1.21776 1.20746 1.45998 1.66340 1.14463 1.09297 1.20442 0.77322 0.87205 0.84672 1.90664 1.51069 1.15992 1.85374 1.21603 1.04067 0.99433 0.92673 1.19727 1.03055 0.96481 0.87008 1.23750 0.95561 0.94285 1.00148 1.22828 1.01414 1.03851 0.96989 1.26016 0.94418 0.91785 1.02268 1.84835 1.33421 1.44320 1.34425 1.73833 1.18121 1.15709 0.99251 0.92467 0.91706 0.92616 0.95802 0.94905 0.78009 0.93492 0.76082 0.88683 0.88334 0.88625 0.89213 0.81010 0.76801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.13 2.25 2.73 -67.93 -0.19 2.07 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.82 5.82 -4.04 -0.02 2.79 16 5 N -0.73 -18.19 5.43 -59.91 -0.33 -18.51 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 10 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 N -0.71 -11.51 4.52 -53.80 -0.24 -11.75 16 15 C 0.52 8.40 7.79 -10.98 -0.09 8.32 16 16 O -0.55 -10.50 15.64 5.56 0.09 -10.41 16 17 C -0.14 -1.82 5.67 -27.88 -0.16 -1.98 16 18 C -0.02 -0.30 5.10 -27.89 -0.14 -0.44 16 19 C 0.02 0.26 6.59 -82.10 -0.54 -0.28 16 20 C -0.23 -2.17 11.12 -39.38 -0.44 -2.61 16 21 C -0.06 -0.50 12.30 29.74 0.37 -0.13 16 22 O 0.10 1.05 11.20 17.18 0.19 1.25 16 23 N -0.36 -4.74 12.06 33.42 0.40 -4.34 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.40 6.25 8.60 -40.82 -0.35 5.90 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.22 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -33.25 323.84 -5.64 -38.89 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.24 Total: 11.43 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.10 Total: -1.40 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.56 Total: -61.80 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.28 Total: -9.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.25 -5.64 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483149327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.343 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds