Wall clock time and date at job start Mon Mar 30 2020 00:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47017 * 2 1 4 4 C 1.46495 * 119.99994 * 262.94161 * 3 2 1 5 5 C 1.53005 * 109.47378 * 89.99907 * 4 3 2 6 6 N 1.46495 * 109.47378 * 179.97438 * 5 4 3 7 7 C 1.36932 * 119.99860 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00656 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99899 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00217 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00113 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47091 * 89.99325 * 11 9 7 13 13 H 1.48502 * 109.47127 * 209.99642 * 11 9 7 14 14 H 1.48494 * 109.46654 * 329.99421 * 11 9 7 15 15 C 1.34779 * 119.99939 * 83.21744 * 3 2 1 16 16 O 1.21610 * 119.99802 * 184.39806 * 15 3 2 17 17 C 1.47420 * 119.99941 * 4.39462 * 15 3 2 18 18 C 1.36091 * 126.44661 * 184.37793 * 17 15 3 19 19 O 1.34258 * 106.95153 * 179.90112 * 18 17 15 20 20 C 1.34058 * 108.22132 * 0.36534 * 19 18 17 21 21 C 1.50696 * 125.37266 * 179.80825 * 20 19 18 22 22 N 1.29933 * 109.24442 * 359.76625 * 20 19 18 23 23 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47621 * 299.99973 * 1 2 3 25 25 H 1.09003 * 109.47557 * 60.00438 * 1 2 3 26 26 H 1.08999 * 109.46908 * 239.99804 * 2 1 3 27 27 H 1.08999 * 109.46901 * 119.99889 * 2 1 3 28 28 H 1.08999 * 109.47156 * 209.99762 * 4 3 2 29 29 H 1.08996 * 109.47329 * 330.00209 * 4 3 2 30 30 H 1.08999 * 109.46689 * 300.00564 * 5 4 3 31 31 H 1.09001 * 109.47075 * 59.99730 * 5 4 3 32 32 H 0.96996 * 119.99861 * 0.02562 * 6 5 4 33 33 H 0.97003 * 120.00416 * 180.02562 * 10 9 7 34 34 H 1.08005 * 126.52376 * 0.03642 * 18 17 15 35 35 H 1.09004 * 109.46788 * 269.95287 * 21 20 19 36 36 H 1.09001 * 109.47862 * 29.95622 * 21 20 19 37 37 H 1.09004 * 109.47315 * 149.96165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4094 2.0199 -1.2591 5 6 1.1959 2.7194 -1.8747 6 7 1.5871 3.3585 -3.1335 7 6 0.6602 4.0489 -3.8679 8 1 -0.3592 4.1226 -3.5189 9 6 1.0311 4.6550 -5.0604 10 7 0.1401 5.3182 -5.7665 11 14 2.7945 4.5282 -5.6637 12 1 2.9395 3.3230 -6.5190 13 1 3.1360 5.7391 -6.4525 14 1 3.7095 4.4217 -4.4990 15 6 2.1129 2.0625 1.1591 16 8 2.4416 3.2333 1.1510 17 6 1.8180 1.3884 2.4365 18 6 1.7906 1.9665 3.6682 19 8 1.4802 1.0003 4.5473 20 6 1.3282 -0.1477 3.8720 21 6 0.9801 -1.4802 4.4838 22 7 1.5276 0.0701 2.6066 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1925 2.7532 -1.0666 29 1 2.7818 1.2634 -1.9498 30 1 0.4128 1.9860 -2.0671 31 1 0.8234 3.4758 -1.1840 32 1 2.5026 3.2920 -3.4471 33 1 0.3991 5.7414 -6.6000 34 1 1.9801 3.0053 3.8951 35 1 1.8958 -2.0064 4.7535 36 1 0.3748 -1.3232 5.3766 37 1 0.4180 -2.0749 3.7637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497375607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:41 Heat of formation + Delta-G solvation = 15.552248 kcal Electronic energy + Delta-G solvation = -20309.131868 eV Core-core repulsion = 17089.562241 eV Total energy + Delta-G solvation = -3219.569627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.69133 -39.71838 -36.29180 -35.32372 -34.44175 -32.54537 -31.62272 -30.40492 -28.49988 -27.83108 -24.81984 -23.32635 -22.72333 -21.84701 -21.19968 -19.62959 -17.71154 -17.52732 -17.15592 -16.75960 -15.99503 -15.04417 -14.71700 -14.33019 -14.21825 -13.87189 -13.77103 -13.58741 -13.49861 -13.39669 -12.89590 -12.65030 -12.57790 -12.01455 -11.70775 -11.38232 -11.29834 -11.07455 -11.00061 -10.71549 -10.32248 -10.12890 -9.91143 -9.55490 -9.25206 -8.84214 -8.49542 -7.19083 -5.71940 -3.07773 0.91941 1.78086 2.31309 2.96383 3.26531 3.42005 3.45087 3.49328 3.60637 4.43334 4.54947 4.63978 4.91086 4.94378 5.08405 5.16442 5.32470 5.38763 5.38938 5.48270 5.56965 5.60199 5.62801 5.75241 5.81922 5.93832 5.98170 6.14379 6.41674 6.60478 6.74719 6.88544 7.20422 7.49180 8.03366 8.18255 8.46440 9.25231 9.97411 10.17119 11.46525 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038811 B = 0.003939 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.279081 B = 7106.694344 C = 7325.056570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 N -0.589 5.589 4 C 0.105 3.895 5 C 0.146 3.854 6 N -0.754 5.754 7 C -0.241 4.241 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.595 3.405 16 O -0.531 6.531 17 C -0.061 4.061 18 C 0.009 3.991 19 O -0.198 6.198 20 C 0.190 3.810 21 C -0.058 4.058 22 N -0.454 5.454 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.231 0.769 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -16.596 22.624 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.320 5.320 4 C -0.018 4.018 5 C 0.018 3.982 6 N -0.400 5.400 7 C -0.371 4.371 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.382 3.618 16 O -0.407 6.407 17 C -0.180 4.180 18 C -0.064 4.064 19 O -0.084 6.084 20 C -0.018 4.018 21 C -0.116 4.116 22 N -0.185 5.185 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.517 -16.348 22.085 27.701 hybrid contribution 1.132 0.610 -0.173 1.297 sum 4.649 -15.737 21.912 27.375 Atomic orbital electron populations 1.22101 0.95916 1.01683 1.02112 1.22159 0.94957 0.81549 1.04623 1.47709 1.63532 1.14650 1.06143 1.21807 0.98816 0.97722 0.83442 1.20946 0.94282 0.95034 0.87913 1.42572 1.09685 1.64750 1.22987 1.19039 0.92481 1.24675 1.00904 0.89275 1.24669 0.97286 0.99894 0.97363 1.69706 1.32933 1.39539 1.16168 0.86520 0.86061 0.77313 0.78545 1.21053 1.21682 1.20226 1.16817 0.77801 0.85284 0.81944 1.90860 1.48287 1.14952 1.86638 1.21822 1.10169 0.90373 0.95662 1.25277 0.99778 0.94556 0.86835 1.84382 1.66536 1.17930 1.39599 1.26513 0.99853 0.89128 0.86323 1.20310 1.03598 0.86002 1.01661 1.70867 1.17142 1.14832 1.15679 0.91977 0.93115 0.92203 0.90941 0.86491 0.89838 0.90308 0.95268 0.95105 0.80694 0.93072 0.75322 0.88777 0.89219 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.84 37.16 0.37 -1.61 16 2 C 0.09 1.11 5.76 -4.04 -0.02 1.09 16 3 N -0.59 -9.09 2.49 -174.96 -0.44 -9.52 16 4 C 0.10 1.81 5.53 -4.04 -0.02 1.79 16 5 C 0.15 3.12 6.58 -4.04 -0.03 3.10 16 6 N -0.75 -19.09 5.41 -59.91 -0.32 -19.41 16 7 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 8 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 10 N -0.94 -30.26 13.97 55.49 0.78 -29.49 16 11 Si 0.89 22.76 27.74 -169.99 -4.71 18.05 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 15 C 0.60 9.67 7.61 -12.52 -0.10 9.58 16 16 O -0.53 -10.29 16.51 5.27 0.09 -10.20 16 17 C -0.06 -0.79 6.38 -83.02 -0.53 -1.32 16 18 C 0.01 0.10 11.95 29.96 0.36 0.45 16 19 O -0.20 -1.87 10.73 6.49 0.07 -1.80 16 20 C 0.19 1.65 8.30 -13.08 -0.11 1.54 16 21 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 22 N -0.45 -5.05 7.09 -7.66 -0.05 -5.11 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.67 7.39 -51.93 -0.38 0.28 16 25 H 0.06 0.85 6.78 -51.93 -0.35 0.50 16 26 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 27 H 0.12 1.37 5.01 -51.93 -0.26 1.11 16 28 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 29 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 30 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.36 8.76 5.53 -40.82 -0.23 8.54 16 33 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 34 H 0.23 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -36.29 312.87 -4.74 -41.03 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.90 Total: 4.29 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 0.04 Total: 7.45 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.04 Total: -63.53 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.16 Total: -12.00 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.29 -4.74 -41.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497375607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.585 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds