Wall clock time and date at job start Mon Mar 30 2020 00:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47017 * 2 1 4 4 C 1.46495 * 119.99994 * 262.94161 * 3 2 1 5 5 C 1.53005 * 109.47378 * 89.99907 * 4 3 2 6 6 N 1.46495 * 109.47378 * 179.97438 * 5 4 3 7 7 C 1.36932 * 119.99860 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00656 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99899 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00217 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00113 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47091 * 89.99325 * 11 9 7 13 13 H 1.48502 * 109.47127 * 209.99642 * 11 9 7 14 14 H 1.48494 * 109.46654 * 329.99421 * 11 9 7 15 15 C 1.34779 * 119.99939 * 83.21744 * 3 2 1 16 16 O 1.21610 * 119.99802 * 184.39806 * 15 3 2 17 17 C 1.47420 * 119.99941 * 4.39462 * 15 3 2 18 18 C 1.36091 * 126.44661 * 184.37793 * 17 15 3 19 19 O 1.34258 * 106.95153 * 179.90112 * 18 17 15 20 20 C 1.34058 * 108.22132 * 0.36534 * 19 18 17 21 21 C 1.50696 * 125.37266 * 179.80825 * 20 19 18 22 22 N 1.29933 * 109.24442 * 359.76625 * 20 19 18 23 23 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47621 * 299.99973 * 1 2 3 25 25 H 1.09003 * 109.47557 * 60.00438 * 1 2 3 26 26 H 1.08999 * 109.46908 * 239.99804 * 2 1 3 27 27 H 1.08999 * 109.46901 * 119.99889 * 2 1 3 28 28 H 1.08999 * 109.47156 * 209.99762 * 4 3 2 29 29 H 1.08996 * 109.47329 * 330.00209 * 4 3 2 30 30 H 1.08999 * 109.46689 * 300.00564 * 5 4 3 31 31 H 1.09001 * 109.47075 * 59.99730 * 5 4 3 32 32 H 0.96996 * 119.99861 * 0.02562 * 6 5 4 33 33 H 0.97003 * 120.00416 * 180.02562 * 10 9 7 34 34 H 1.08005 * 126.52376 * 0.03642 * 18 17 15 35 35 H 1.09004 * 109.46788 * 269.95287 * 21 20 19 36 36 H 1.09001 * 109.47862 * 29.95622 * 21 20 19 37 37 H 1.09004 * 109.47315 * 149.96165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4094 2.0199 -1.2591 5 6 1.1959 2.7194 -1.8747 6 7 1.5871 3.3585 -3.1335 7 6 0.6602 4.0489 -3.8679 8 1 -0.3592 4.1226 -3.5189 9 6 1.0311 4.6550 -5.0604 10 7 0.1401 5.3182 -5.7665 11 14 2.7945 4.5282 -5.6637 12 1 2.9395 3.3230 -6.5190 13 1 3.1360 5.7391 -6.4525 14 1 3.7095 4.4217 -4.4990 15 6 2.1129 2.0625 1.1591 16 8 2.4416 3.2333 1.1510 17 6 1.8180 1.3884 2.4365 18 6 1.7906 1.9665 3.6682 19 8 1.4802 1.0003 4.5473 20 6 1.3282 -0.1477 3.8720 21 6 0.9801 -1.4802 4.4838 22 7 1.5276 0.0701 2.6066 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1925 2.7532 -1.0666 29 1 2.7818 1.2634 -1.9498 30 1 0.4128 1.9860 -2.0671 31 1 0.8234 3.4758 -1.1840 32 1 2.5026 3.2920 -3.4471 33 1 0.3991 5.7414 -6.6000 34 1 1.9801 3.0053 3.8951 35 1 1.8958 -2.0064 4.7535 36 1 0.3748 -1.3232 5.3766 37 1 0.4180 -2.0749 3.7637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497375607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:41 Heat of formation + Delta-G solvation = -12.003434 kcal Electronic energy + Delta-G solvation = -20310.326772 eV Core-core repulsion = 17089.562241 eV Total energy + Delta-G solvation = -3220.764531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.46970 -40.96168 -37.72451 -36.65445 -35.78318 -33.77685 -33.08908 -31.75698 -29.89514 -28.67389 -26.24972 -24.81121 -23.83796 -23.16430 -22.49296 -20.68628 -19.75816 -18.65737 -17.92982 -17.73805 -17.26159 -16.55369 -16.36881 -15.65751 -15.54216 -15.16787 -14.93318 -14.81004 -14.59606 -14.52237 -13.86419 -13.80603 -13.62220 -13.22540 -13.05576 -12.87030 -12.75021 -12.54673 -12.33665 -12.12773 -12.11389 -11.85505 -11.51773 -11.04440 -10.95128 -10.10688 -9.72654 -9.39218 -8.07068 -5.43390 0.04836 0.95722 1.36852 1.41724 1.48958 1.57921 1.84174 2.16051 2.46137 2.84376 3.23519 3.50349 3.68721 3.80423 4.02575 4.11836 4.22216 4.42253 4.44530 4.49028 4.52825 4.63662 4.71028 4.73394 4.78319 4.80141 4.98561 5.07812 5.10262 5.27928 5.45160 5.58753 5.69064 6.15454 6.22105 6.49664 6.95812 7.01594 7.73443 7.96269 9.14395 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038811 B = 0.003939 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.279081 B = 7106.694344 C = 7325.056570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.089 3.911 3 N -0.590 5.590 4 C 0.116 3.884 5 C 0.152 3.848 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.050 0.950 9 C -0.062 4.062 10 N -0.983 5.983 11 Si 0.962 3.038 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.253 1.253 15 C 0.589 3.411 16 O -0.574 6.574 17 C -0.091 4.091 18 C 0.022 3.978 19 O -0.195 6.195 20 C 0.202 3.798 21 C -0.058 4.058 22 N -0.472 5.472 23 H 0.089 0.911 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.032 0.968 31 H 0.001 0.999 32 H 0.369 0.631 33 H 0.261 0.739 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -19.139 24.019 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 N -0.320 5.320 4 C -0.007 4.007 5 C 0.024 3.976 6 N -0.400 5.400 7 C -0.375 4.375 8 H 0.068 0.932 9 C -0.253 4.253 10 N -0.633 5.633 11 Si 0.788 3.212 12 H -0.194 1.194 13 H -0.219 1.219 14 H -0.177 1.177 15 C 0.378 3.622 16 O -0.454 6.454 17 C -0.209 4.209 18 C -0.052 4.052 19 O -0.082 6.082 20 C -0.007 4.007 21 C -0.115 4.115 22 N -0.203 5.203 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.139 -18.955 23.510 30.634 hybrid contribution 0.482 1.351 -0.478 1.512 sum 5.621 -17.604 23.032 29.529 Atomic orbital electron populations 1.22032 0.95949 1.02844 1.00220 1.22382 0.94806 0.79963 1.06103 1.47819 1.63327 1.15605 1.05257 1.21567 0.96264 0.98137 0.84730 1.20969 0.96420 0.94218 0.85967 1.42494 1.09294 1.64493 1.23732 1.18967 0.91828 1.25130 1.01529 0.93226 1.25593 1.02692 0.99567 0.97479 1.69896 1.35749 1.40818 1.16799 0.85311 0.79781 0.77545 0.78576 1.19405 1.21909 1.17745 1.17288 0.76826 0.84929 0.83143 1.90821 1.50329 1.16829 1.87447 1.21472 1.12938 0.91694 0.94828 1.25592 0.98012 0.95380 0.86252 1.84433 1.66411 1.18078 1.39268 1.27527 0.97341 0.90061 0.85733 1.20642 1.05000 0.83457 1.02419 1.70760 1.18634 1.13773 1.17131 0.89258 0.94344 0.94620 0.89253 0.85209 0.90962 0.87453 0.94981 0.98063 0.79707 0.93052 0.73699 0.86775 0.87246 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.84 71.98 0.71 -2.88 16 2 C 0.09 2.05 5.76 86.38 0.50 2.55 16 3 N -0.59 -17.89 2.49 -825.70 -2.06 -19.95 16 4 C 0.12 3.95 5.53 86.38 0.48 4.43 16 5 C 0.15 6.58 6.58 86.38 0.57 7.15 16 6 N -0.75 -38.19 5.41 -343.45 -1.86 -40.04 16 7 C -0.24 -14.89 10.47 84.03 0.88 -14.01 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 10 N -0.98 -65.06 13.97 21.65 0.30 -64.76 16 11 Si 0.96 46.69 27.74 68.60 1.90 48.60 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 15 C 0.59 19.31 7.61 86.66 0.66 19.97 16 16 O -0.57 -22.92 16.51 -4.06 -0.07 -22.99 16 17 C -0.09 -2.31 6.38 40.41 0.26 -2.05 16 18 C 0.02 0.44 11.95 67.32 0.80 1.24 16 19 O -0.20 -3.26 10.73 0.29 0.00 -3.26 16 20 C 0.20 2.98 8.30 88.39 0.73 3.71 16 21 C -0.06 -0.23 10.51 71.23 0.75 0.52 16 22 N -0.47 -9.66 7.09 -293.03 -2.08 -11.73 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 0.99 7.39 -2.39 -0.02 0.97 16 25 H 0.03 1.00 6.78 -2.39 -0.02 0.98 16 26 H 0.09 1.78 7.82 -2.39 -0.02 1.76 16 27 H 0.13 2.76 5.01 -2.39 -0.01 2.75 16 28 H 0.07 2.64 7.48 -2.39 -0.02 2.62 16 29 H 0.11 3.04 7.85 -2.39 -0.02 3.02 16 30 H 0.03 1.38 6.78 -2.39 -0.02 1.37 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.37 17.35 5.53 -92.71 -0.51 16.84 16 33 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 34 H 0.25 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -81.19 312.87 3.47 -77.72 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.52 Total: 19.11 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.80 Total: 17.30 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -5.69 Total: -136.48 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.60 kcal Total: -81.19 3.47 -77.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497375607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.713 kcal (2) G-P(sol) polarization free energy of solvation -81.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds