Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28608 * 124.61522 * 2 1 4 4 C 1.31373 * 108.71624 * 179.97438 * 3 2 1 5 5 C 1.39677 * 105.90396 * 359.97438 * 4 3 2 6 6 C 1.50696 * 127.05113 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47242 * 124.99905 * 6 5 4 8 8 C 1.53006 * 109.47127 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.46867 * 180.02562 * 8 7 6 10 10 C 1.34232 * 116.99450 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99784 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.47298 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47364 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00122 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00071 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46866 * 90.00002 * 18 16 14 20 20 H 1.48501 * 109.47078 * 209.99763 * 18 16 14 21 21 H 1.48493 * 109.47295 * 329.99769 * 18 16 14 22 22 N 1.28594 * 124.62543 * 180.24415 * 2 1 3 23 23 H 1.08994 * 109.47303 * 90.02669 * 1 2 3 24 24 H 1.09003 * 109.46563 * 210.02724 * 1 2 3 25 25 H 1.09000 * 109.47243 * 330.02130 * 1 2 3 26 26 H 1.07996 * 127.04756 * 180.02562 * 4 3 2 27 27 H 1.08996 * 109.47390 * 4.99875 * 6 5 4 28 28 H 1.09001 * 109.46948 * 244.99516 * 6 5 4 29 29 H 1.09001 * 109.47502 * 60.00161 * 7 6 5 30 30 H 1.09001 * 109.47289 * 299.99957 * 7 6 5 31 31 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 32 32 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 33 33 H 1.09003 * 109.47034 * 299.99802 * 12 10 9 34 34 H 1.09003 * 109.47248 * 59.99924 * 12 10 9 35 35 H 1.09003 * 109.46845 * 299.99831 * 13 12 10 36 36 H 1.09003 * 109.47104 * 59.99749 * 13 12 10 37 37 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6985 0.0006 5 6 3.4592 -0.6982 0.0015 6 6 4.6620 -1.6061 0.0019 7 6 4.5709 -2.5729 1.1842 8 6 5.7924 -3.4943 1.1849 9 8 5.7056 -4.4122 2.3066 10 6 6.7070 -5.2943 2.4510 11 8 7.6253 -5.2996 1.6658 12 6 6.6858 -6.2781 3.5924 13 6 7.9331 -7.1616 3.5274 14 6 7.9116 -8.1458 4.6684 15 1 7.0906 -8.1413 5.3700 16 6 8.9407 -9.0513 4.8173 17 7 9.9408 -9.0565 3.9633 18 14 8.9143 -10.2708 6.2321 19 1 8.2172 -11.5102 5.8043 20 1 10.3072 -10.5984 6.6293 21 1 8.1977 -9.6734 7.3873 22 7 2.1957 -1.0582 -0.0045 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3632 -0.8898 0.5143 25 1 -0.3634 0.8902 0.5135 26 1 4.3210 1.3493 0.0011 27 1 5.5688 -1.0079 0.0908 28 1 4.6901 -2.1723 -0.9291 29 1 3.6641 -3.1713 1.0953 30 1 4.5427 -2.0068 2.1152 31 1 5.8209 -4.0605 0.2540 32 1 6.6989 -2.8957 1.2741 33 1 6.6732 -5.7368 4.5384 34 1 5.7945 -6.9013 3.5185 35 1 7.9461 -7.7029 2.5814 36 1 8.8242 -6.5382 3.6016 37 1 10.6646 -9.6938 4.0677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515352524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = -23.843429 kcal Electronic energy + Delta-G solvation = -18823.688732 eV Core-core repulsion = 15602.410780 eV Total energy + Delta-G solvation = -3221.277952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.50755 -41.42199 -37.92037 -36.17875 -35.63084 -34.07547 -33.25817 -32.92280 -29.56341 -28.07126 -26.75235 -24.26449 -23.29382 -23.02502 -21.64328 -21.18300 -19.04422 -18.28606 -18.02902 -17.82805 -17.70691 -16.94843 -16.46790 -16.05325 -15.71022 -15.13296 -14.77654 -14.36961 -14.14790 -14.03533 -13.73705 -13.56052 -13.46533 -13.18429 -12.82622 -12.60840 -12.49764 -12.31399 -11.99368 -11.95593 -11.78727 -11.73264 -11.43756 -11.38679 -11.25644 -11.19654 -10.56674 -10.06395 -8.18959 -6.32635 0.81661 1.27508 1.40621 1.44409 1.46552 1.52614 1.57584 1.80935 2.44286 3.14691 3.17212 3.62247 3.92364 3.99447 4.05370 4.24141 4.30064 4.34187 4.41759 4.45555 4.47004 4.53751 4.57653 4.61995 4.76883 4.92842 4.99409 5.16226 5.24072 5.31994 5.45981 5.51730 5.57115 5.77942 5.82033 6.14726 6.81990 6.89349 7.34784 7.37452 8.93678 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052696 B = 0.002384 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.220791 B =11740.199293 C =12105.258782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.165 5.165 3 N -0.313 5.313 4 C -0.025 4.025 5 C -0.004 4.004 6 C -0.021 4.021 7 C -0.099 4.099 8 C 0.058 3.942 9 O -0.360 6.360 10 C 0.466 3.534 11 O -0.544 6.544 12 C -0.096 4.096 13 C 0.038 3.962 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.256 1.256 22 N -0.310 5.310 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.226 0.774 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.114 0.886 35 H -0.010 1.010 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.599 20.113 -7.403 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.067 5.067 3 N -0.154 5.154 4 C -0.207 4.207 5 C -0.167 4.167 6 C -0.060 4.060 7 C -0.137 4.137 8 C -0.016 4.016 9 O -0.278 6.278 10 C 0.311 3.689 11 O -0.434 6.434 12 C -0.133 4.133 13 C 0.001 3.999 14 C -0.582 4.582 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.180 1.180 22 N -0.153 5.153 23 H 0.122 0.878 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.243 0.757 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.639 20.093 -7.709 29.135 hybrid contribution 1.362 -0.652 0.175 1.520 sum -18.276 19.441 -7.535 27.727 Atomic orbital electron populations 1.22504 0.68230 1.07192 1.06312 1.48385 1.10120 0.98810 1.49395 1.74016 1.04762 1.16778 1.19894 1.25214 0.94998 0.94835 1.05637 1.23355 0.92602 0.94746 1.05951 1.19814 0.92646 0.94973 0.98607 1.21379 0.96251 0.96322 0.99750 1.23249 1.00485 0.90565 0.87291 1.86507 1.46671 1.44604 1.49973 1.24442 0.78678 0.79775 0.86015 1.90622 1.36834 1.70649 1.45303 1.21514 1.02371 0.94832 0.94602 1.18799 0.91682 0.93445 0.96000 1.21649 1.07474 1.16916 1.12142 0.90493 1.26110 0.94908 0.99868 0.99414 1.70157 1.11112 1.37741 1.38525 0.85303 0.77351 0.78583 0.78905 1.19729 1.21144 1.18010 1.73980 1.04524 1.16567 1.20212 0.87842 0.86895 0.86405 0.75724 0.86603 0.89064 0.91212 0.90687 0.91310 0.90601 0.86677 0.86756 0.99187 0.99086 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.57 127.77 1.48 2.26 16 2 N -0.17 -3.02 4.35 -206.55 -0.90 -3.91 16 3 N -0.31 -6.09 12.05 -56.87 -0.69 -6.77 16 4 C -0.03 -0.42 12.15 85.11 1.03 0.62 16 5 C 0.00 -0.08 6.61 42.97 0.28 0.20 16 6 C -0.02 -0.31 5.81 29.85 0.17 -0.14 16 7 C -0.10 -1.90 5.57 30.60 0.17 -1.73 16 8 C 0.06 1.44 5.47 71.98 0.39 1.83 16 9 O -0.36 -11.64 10.22 -51.44 -0.53 -12.16 16 10 C 0.47 18.50 7.96 71.24 0.57 19.07 16 11 O -0.54 -25.48 15.73 21.97 0.35 -25.14 16 12 C -0.10 -3.91 5.75 29.85 0.17 -3.74 16 13 C 0.04 2.07 4.26 29.85 0.13 2.20 16 14 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -58.36 13.29 21.45 0.28 -58.08 16 18 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 22 N -0.31 -6.58 12.05 -47.25 -0.57 -7.15 16 23 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 24 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.23 1.99 8.06 -2.91 -0.02 1.97 16 27 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 34 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 35 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 36 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -78.22 328.11 6.12 -72.09 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.05 Total: 4.82 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.09 Total: -9.59 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.87 Total: -75.91 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.18 Total: -37.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -78.22 6.12 -72.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515352524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal (2) G-P(sol) polarization free energy of solvation -78.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds