Wall clock time and date at job start Mon Mar 30 2020 00:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46807 * 60.00091 * 8 6 4 10 10 H 1.48498 * 109.47276 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47057 * 299.99983 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 N 1.39656 * 125.54459 * 359.41364 * 14 12 2 16 16 C 1.34217 * 112.99737 * 179.83502 * 15 14 12 17 17 O 1.21281 * 125.62135 * 180.22008 * 16 15 14 18 18 C 1.51451 * 108.76176 * 0.43207 * 16 15 14 19 19 C 1.45970 * 125.54169 * 179.72686 * 14 12 2 20 20 C 1.53695 * 111.40839 * 300.42491 * 19 14 12 21 21 C 1.55147 * 102.68724 * 100.38316 * 20 19 14 22 22 N 1.48610 * 103.34686 * 36.67043 * 21 20 19 23 23 C 1.48163 * 105.85692 * 321.33584 * 22 21 20 24 24 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 28 28 H 0.97002 * 123.50428 * 0.02562 * 15 14 12 29 29 H 1.08999 * 110.53761 * 241.14305 * 18 16 15 30 30 H 1.08994 * 110.54180 * 118.35768 * 18 16 15 31 31 H 1.09002 * 110.76937 * 218.68506 * 20 19 14 32 32 H 1.09003 * 110.76674 * 342.08501 * 20 19 14 33 33 H 1.09000 * 110.64312 * 278.19843 * 21 20 19 34 34 H 1.09004 * 110.78513 * 155.20043 * 21 20 19 35 35 H 1.00898 * 110.99807 * 200.80564 * 22 21 20 36 36 H 1.08994 * 110.01381 * 265.80842 * 23 22 21 37 37 H 1.09002 * 110.04854 * 144.45291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.8277 -2.5196 -4.0083 10 1 1.8277 -0.4189 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 7 0.9146 0.8698 2.7165 16 6 0.7417 1.0946 4.0284 17 8 0.0976 2.0020 4.5107 18 6 1.4879 0.0314 4.8072 19 6 2.1147 -0.8480 3.7221 20 6 1.6301 -2.3015 3.8441 21 6 2.9008 -3.1157 3.4842 22 7 4.0015 -2.3157 4.0818 23 6 3.6389 -0.8968 3.8569 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7089 1.1616 -3.4844 28 1 0.5301 1.4279 2.0225 29 1 0.7976 -0.5496 5.4189 30 1 2.2618 0.4839 5.4272 31 1 1.3083 -2.5175 4.8629 32 1 0.8282 -2.5024 3.1336 33 1 3.0192 -3.1851 2.4029 34 1 2.8624 -4.1097 3.9299 35 1 4.8853 -2.5362 3.6480 36 1 4.1061 -0.5330 2.9418 37 1 3.9580 -0.2907 4.7048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522311723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:07 Heat of formation + Delta-G solvation = -15.202727 kcal Electronic energy + Delta-G solvation = -21712.702891 eV Core-core repulsion = 18491.799629 eV Total energy + Delta-G solvation = -3220.903263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37098 -38.66876 -37.63338 -36.06827 -33.97942 -31.85710 -30.87397 -30.03503 -29.28644 -25.96976 -25.36890 -23.34339 -21.66099 -21.26920 -20.82379 -19.33933 -17.10421 -16.64871 -16.33679 -15.88116 -15.75509 -15.23940 -14.92479 -14.58738 -14.15924 -13.88755 -13.39186 -13.31182 -13.00416 -12.70764 -12.19252 -12.02683 -11.91835 -11.55032 -11.27689 -11.23983 -11.13994 -10.90724 -10.85230 -10.52499 -10.45719 -10.14257 -9.91896 -9.21523 -9.10605 -8.55341 -8.32623 -7.87011 -6.20046 -4.25150 2.13531 2.48213 3.22909 3.26445 3.29575 3.33748 3.94338 4.13565 4.32537 4.37811 4.49324 4.56556 4.84330 5.13661 5.37091 5.38708 5.45323 5.53310 5.67858 5.80068 5.99291 6.00937 6.05504 6.26601 6.29166 6.38835 6.57238 6.66358 6.75252 7.09429 7.21872 7.33873 7.54471 7.70223 7.85272 8.04334 8.41941 8.72366 8.83341 9.41338 10.87503 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.006902 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.925994 B = 4055.755016 C = 5011.756532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.543 3.457 13 O -0.514 6.514 14 N -0.422 5.422 15 N -0.512 5.512 16 C 0.523 3.477 17 O -0.529 6.529 18 C -0.150 4.150 19 C 0.152 3.848 20 C -0.120 4.120 21 C 0.027 3.973 22 N -0.667 5.667 23 C 0.043 3.957 24 H 0.099 0.901 25 H 0.036 0.964 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.432 0.568 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.339 0.661 36 H 0.056 0.944 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -3.025 11.935 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.336 3.664 13 O -0.384 6.384 14 N -0.253 5.253 15 N -0.266 5.266 16 C 0.308 3.692 17 O -0.404 6.404 18 C -0.191 4.191 19 C 0.067 3.933 20 C -0.159 4.159 21 C -0.102 4.102 22 N -0.295 5.295 23 C -0.087 4.087 24 H 0.117 0.883 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.281 0.719 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.074 0.926 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.449 -3.136 12.626 13.090 hybrid contribution 0.245 0.025 -2.175 2.189 sum 1.694 -3.111 10.452 11.035 Atomic orbital electron populations 1.21899 0.96214 1.00438 1.01097 1.18961 0.94344 0.96968 0.88614 0.92761 1.21001 1.31751 1.13130 0.88633 0.90664 1.24952 0.94879 0.94978 0.99233 1.69844 1.36520 1.22776 1.24053 0.86450 0.79288 0.79689 0.81420 1.20091 1.21230 1.20118 1.22114 0.78460 0.84293 0.81524 1.90505 1.38155 1.26247 1.83524 1.48541 1.49431 1.21053 1.06309 1.45602 1.49160 1.23073 1.08725 1.20340 0.80912 0.85863 0.82102 1.90807 1.43043 1.34355 1.72167 1.22608 1.01742 0.96753 0.97961 1.21177 0.95263 0.94287 0.82599 1.22780 0.98595 0.92235 1.02335 1.23326 0.89644 0.96445 1.00751 1.63261 1.05501 1.02809 1.57938 1.22893 0.92749 0.91877 1.01222 0.88277 0.94500 0.96815 0.92604 0.71944 0.86565 0.86529 0.89808 0.90236 0.89991 0.90774 0.84630 0.92574 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.74 37.16 0.32 -2.65 16 2 C 0.03 0.74 2.17 -92.92 -0.20 0.54 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.51 -13.38 8.37 -34.44 -0.29 -13.67 16 5 H 0.08 2.07 6.75 -52.49 -0.35 1.72 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.54 11.16 6.57 -10.98 -0.07 11.09 16 13 O -0.51 -11.33 11.63 5.55 0.06 -11.27 16 14 N -0.42 -7.07 3.36 -47.49 -0.16 -7.23 16 15 N -0.51 -8.07 5.82 31.32 0.18 -7.89 16 16 C 0.52 7.84 8.65 -10.87 -0.09 7.74 16 17 O -0.53 -9.37 18.03 5.56 0.10 -9.27 16 18 C -0.15 -1.77 6.26 -27.46 -0.17 -1.94 16 19 C 0.15 2.11 1.02 -131.65 -0.13 1.97 16 20 C -0.12 -1.59 5.86 -25.23 -0.15 -1.74 16 21 C 0.03 0.37 7.06 -1.74 -0.01 0.36 16 22 N -0.67 -8.62 7.53 -110.21 -0.83 -9.45 16 23 C 0.04 0.58 6.51 -3.08 -0.02 0.56 16 24 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.01 0.24 5.35 -51.93 -0.28 -0.03 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.43 6.87 6.50 -182.93 -1.19 5.68 16 29 H 0.12 1.15 7.39 -51.93 -0.38 0.77 16 30 H 0.12 1.15 7.18 -51.93 -0.37 0.77 16 31 H 0.08 0.91 7.52 -51.93 -0.39 0.52 16 32 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.08 1.39 5.46 -51.93 -0.28 1.10 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.34 4.17 8.92 -39.29 -0.35 3.82 16 36 H 0.06 0.89 7.27 -51.93 -0.38 0.51 16 37 H 0.08 0.97 7.16 -51.93 -0.37 0.59 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -28.88 291.41 -7.04 -35.92 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.49 Total: 8.45 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.91 Total: 3.79 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.18 Total: -47.82 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.16 Total: -20.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.88 -7.04 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522311723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.721 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds