Wall clock time and date at job start Mon Mar 30 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 H 1.08999 * 109.47159 * 25.16351 * 5 4 3 7 7 O 1.42898 * 109.47211 * 145.16264 * 5 4 3 8 8 C 1.50698 * 109.46647 * 265.16530 * 5 4 3 9 9 O 1.21290 * 119.99899 * 244.99441 * 8 5 4 10 10 N 1.34776 * 120.00496 * 64.99907 * 8 5 4 11 11 C 1.46496 * 120.00452 * 179.97438 * 10 8 5 12 12 C 1.52993 * 109.47500 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47443 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47199 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00102 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00491 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99682 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47422 * 89.99904 * 18 16 14 20 20 H 1.48500 * 109.46949 * 210.00053 * 18 16 14 21 21 H 1.48497 * 109.46841 * 329.99590 * 18 16 14 22 22 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 23 23 N 1.30836 * 108.20019 * 359.59732 * 22 4 3 24 24 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 25 25 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 26 26 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 27 27 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 28 28 H 0.96696 * 114.00059 * 60.00203 * 7 5 4 29 29 H 0.97004 * 119.99451 * 359.97438 * 10 8 5 30 30 H 1.09004 * 109.46840 * 300.00604 * 11 10 8 31 31 H 1.08998 * 109.46957 * 59.99354 * 11 10 8 32 32 H 1.09000 * 109.46710 * 300.00237 * 12 11 10 33 33 H 1.09008 * 109.47224 * 59.99703 * 12 11 10 34 34 H 1.09000 * 109.46642 * 299.99755 * 13 12 11 35 35 H 1.08991 * 109.47193 * 59.99477 * 13 12 11 36 36 H 0.96997 * 120.00449 * 179.97438 * 17 16 14 37 37 H 1.08002 * 125.90382 * 179.86983 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 1 4.5188 2.5117 0.4512 7 8 5.7959 0.9228 0.7871 8 6 5.2530 1.7434 -1.3994 9 8 6.3329 1.3064 -1.7370 10 7 4.4869 2.4066 -2.2881 11 6 4.9586 2.5999 -3.6615 12 6 3.9081 3.3774 -4.4569 13 6 4.4005 3.5787 -5.8915 14 6 3.3660 4.3451 -6.6747 15 1 2.4488 4.6570 -6.1972 16 6 3.5903 4.6482 -8.0010 17 7 2.6873 5.3165 -8.6847 18 14 5.1770 4.1093 -8.8267 19 1 4.9919 2.7620 -9.4231 20 1 5.5335 5.0784 -9.8939 21 1 6.2669 4.0592 -7.8193 22 6 3.5347 -0.7322 0.0000 23 7 2.2891 -1.1328 0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3632 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.9282 2.1193 -0.0004 28 1 6.0685 0.0567 0.4547 29 1 3.6231 2.7559 -2.0182 30 1 5.8931 3.1609 -3.6491 31 1 5.1238 1.6292 -4.1289 32 1 2.9734 2.8168 -4.4693 33 1 3.7433 4.3482 -3.9893 34 1 5.3353 4.1392 -5.8794 35 1 4.5649 2.6079 -6.3588 36 1 2.8453 5.5300 -9.6176 37 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565666031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:09 Heat of formation + Delta-G solvation = -18.850756 kcal Electronic energy + Delta-G solvation = -19733.743190 eV Core-core repulsion = 16512.681737 eV Total energy + Delta-G solvation = -3221.061453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66150 -39.67679 -36.74855 -35.42093 -33.58843 -33.31321 -31.79998 -30.94354 -28.31520 -27.12637 -25.71430 -22.87267 -21.51298 -21.18019 -20.68615 -19.99228 -18.04191 -17.59448 -16.77643 -16.11898 -15.75463 -15.71405 -15.15080 -14.78749 -14.60319 -14.16426 -13.84068 -13.67010 -13.20870 -13.03802 -12.86320 -12.73194 -12.31015 -12.00698 -11.90873 -11.37926 -11.11555 -10.92408 -10.84023 -10.21334 -9.99534 -9.81151 -9.76461 -9.59529 -9.26187 -8.90412 -8.67218 -8.58307 -6.09316 -4.08192 1.51528 2.16209 2.33430 2.70697 3.27609 3.29578 3.37271 3.41509 4.14830 4.23820 4.42075 4.44990 4.68327 4.78562 4.81173 4.83837 5.02375 5.07014 5.24990 5.42098 5.51914 5.62310 5.67217 5.98007 6.22410 6.31396 6.40848 6.60948 6.65123 6.75565 7.19340 7.26326 7.32997 7.34583 7.59817 7.73548 8.25270 8.46935 8.93975 9.53088 11.03889 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.003897 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.677824 B = 7183.819097 C = 8082.456733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.371 5.371 3 C 0.075 3.925 4 C -0.275 4.275 5 C 0.177 3.823 6 H 0.126 0.874 7 O -0.532 6.532 8 C 0.486 3.514 9 O -0.539 6.539 10 N -0.718 5.718 11 C 0.113 3.887 12 C -0.112 4.112 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.065 3.935 23 N -0.292 5.292 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.180 0.820 28 H 0.382 0.618 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -8.979 20.341 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.152 5.152 3 C -0.073 4.073 4 C -0.287 4.287 5 C 0.113 3.887 6 H 0.144 0.856 7 O -0.336 6.336 8 C 0.270 3.730 9 O -0.416 6.416 10 N -0.370 5.370 11 C -0.009 4.009 12 C -0.150 4.150 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.121 4.121 23 N -0.113 5.113 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.197 0.803 28 H 0.231 0.769 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.074 -9.700 20.266 22.677 hybrid contribution 0.749 0.217 -0.912 1.200 sum -2.325 -9.483 19.353 21.677 Atomic orbital electron populations 1.21941 0.73719 1.05032 1.03527 1.48525 1.06913 1.03710 1.56036 1.22308 0.90353 0.93855 1.00775 1.20428 0.94423 0.94726 1.19173 1.19844 0.84016 0.96177 0.88709 0.85608 1.86572 1.55683 1.38231 1.53134 1.21469 0.85085 0.78261 0.88138 1.90713 1.21678 1.49722 1.79470 1.46094 1.21783 1.56990 1.12116 1.21663 0.98711 1.00719 0.79857 1.21695 0.97009 0.98841 0.97483 1.19503 0.97378 0.96785 0.91268 1.21085 1.04294 1.35201 0.95469 0.91056 1.25022 0.96530 0.94541 0.97315 1.69905 1.34716 1.40089 1.09491 0.86782 0.84536 0.78616 0.79416 1.20242 1.21325 1.18868 1.23645 0.95464 0.94084 0.98937 1.77412 1.01439 1.08148 1.24265 0.90541 0.88993 0.89069 0.80336 0.76872 0.76892 0.91660 0.91851 0.92284 0.92070 0.96257 0.96776 0.92670 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.85 0.69 1.21 16 2 N -0.37 -3.42 4.01 -68.16 -0.27 -3.69 16 3 C 0.07 0.61 11.40 -17.23 -0.20 0.41 16 4 C -0.28 -2.68 5.10 -105.05 -0.54 -3.21 16 5 C 0.18 1.81 3.83 -29.03 -0.11 1.70 16 6 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 7 O -0.53 -5.97 12.88 -55.09 -0.71 -6.68 16 8 C 0.49 6.64 7.15 -10.99 -0.08 6.56 16 9 O -0.54 -9.51 16.32 -14.31 -0.23 -9.75 16 10 N -0.72 -9.37 5.51 -60.30 -0.33 -9.70 16 11 C 0.11 1.84 5.67 -4.05 -0.02 1.82 16 12 C -0.11 -2.04 5.27 -26.74 -0.14 -2.18 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 15 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.07 0.69 11.40 -17.37 -0.20 0.49 16 23 N -0.29 -3.42 12.58 30.62 0.39 -3.03 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.38 3.48 7.99 45.56 0.36 3.84 16 29 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.18 1.52 7.64 -52.49 -0.40 1.11 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -36.36 322.32 -5.88 -42.25 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.54 Total: 2.16 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.14 Total: -6.62 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.55 Total: -43.18 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.94 Total: -16.42 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.36 -5.88 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565666031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.395 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds