Wall clock time and date at job start Mon Mar 30 2020 00:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47382 * 2 1 4 4 C 1.36939 * 120.00050 * 264.29125 * 3 2 1 5 5 H 1.08002 * 120.00234 * 188.63743 * 4 3 2 6 6 C 1.38811 * 120.00048 * 8.63692 * 4 3 2 7 7 N 1.31626 * 120.00122 * 24.60114 * 6 4 3 8 8 Si 1.86802 * 120.00233 * 204.60442 * 6 4 3 9 9 H 1.48500 * 109.46920 * 85.02382 * 8 6 4 10 10 H 1.48498 * 109.47095 * 205.02416 * 8 6 4 11 11 H 1.48503 * 109.46895 * 325.02439 * 8 6 4 12 12 C 1.46497 * 120.00151 * 84.28835 * 3 2 1 13 13 C 1.53005 * 109.47145 * 270.00453 * 12 3 2 14 14 N 1.46497 * 109.47145 * 179.97438 * 13 12 3 15 15 C 1.34781 * 120.00012 * 179.97438 * 14 13 12 16 16 O 1.21577 * 119.99944 * 359.72498 * 15 14 13 17 17 C 1.47506 * 119.99831 * 179.72437 * 15 14 13 18 18 C 1.36831 * 126.94254 * 179.71477 * 17 15 14 19 19 C 1.41262 * 103.84607 * 179.90766 * 18 17 15 20 20 C 1.50701 * 126.70277 * 180.12673 * 19 18 17 21 21 N 1.30133 * 106.59143 * 0.35754 * 19 18 17 22 22 O 1.20882 * 111.98074 * 359.76735 * 21 19 18 23 23 H 1.08993 * 109.47168 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47207 * 300.00217 * 1 2 3 25 25 H 1.09004 * 109.47415 * 59.99928 * 1 2 3 26 26 H 1.09004 * 109.47287 * 240.00329 * 2 1 3 27 27 H 1.08997 * 109.47662 * 119.99833 * 2 1 3 28 28 H 0.97000 * 120.00369 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47284 * 150.00165 * 12 3 2 30 30 H 1.08996 * 109.46939 * 30.00232 * 12 3 2 31 31 H 1.09001 * 109.47265 * 59.99700 * 13 12 3 32 32 H 1.09005 * 109.46924 * 299.99501 * 13 12 3 33 33 H 0.97002 * 120.00229 * 359.72183 * 14 13 12 34 34 H 1.07995 * 128.07131 * 0.02562 * 18 17 15 35 35 H 1.09001 * 109.46812 * 270.24775 * 20 19 18 36 36 H 1.08999 * 109.47204 * 30.24759 * 20 19 18 37 37 H 1.09001 * 109.47051 * 150.24945 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1714 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4857 -2.4603 8 14 3.0770 1.7731 -3.9088 9 1 4.3045 0.9377 -3.9309 10 1 2.2688 1.4976 -5.1238 11 1 3.4556 3.2088 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8474 1.5584 14 7 0.9587 3.5796 2.8211 15 6 -0.0786 4.3041 3.2854 16 8 -1.1163 4.3541 2.6539 17 6 0.0452 5.0365 4.5599 18 6 -0.9088 5.8144 5.1573 19 6 -0.2821 6.2705 6.3384 20 6 -0.8832 7.1705 7.3871 21 7 0.9172 5.7656 6.3414 22 8 1.1217 5.0792 5.3675 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.8971 0.0501 -3.3039 29 1 2.9552 2.8371 1.1838 30 1 2.3579 1.4133 2.0694 31 1 0.0220 2.1242 1.6369 32 1 0.6194 3.5481 0.7513 33 1 1.7867 3.5401 3.3248 34 1 -1.9082 6.0282 4.8084 35 1 -0.6798 8.2107 7.1329 36 1 -1.9606 7.0106 7.4289 37 1 -0.4439 6.9410 8.3579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663355411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:57 Heat of formation + Delta-G solvation = 52.397678 kcal Electronic energy + Delta-G solvation = -19954.805745 eV Core-core repulsion = 16736.833856 eV Total energy + Delta-G solvation = -3217.971889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.15801 -39.47164 -36.51144 -35.18744 -34.39799 -32.29212 -31.34682 -29.69615 -28.97244 -27.77366 -24.63609 -23.52639 -22.94708 -21.61245 -20.54229 -19.89993 -18.37143 -17.94466 -16.83168 -16.21189 -15.80531 -15.12201 -14.86481 -14.33103 -13.88415 -13.83756 -13.67447 -13.45090 -13.37652 -13.00246 -12.69882 -12.16256 -11.89058 -11.62812 -11.43529 -11.14967 -10.79977 -10.57436 -10.37040 -10.32370 -10.31536 -9.94479 -9.87282 -9.72175 -9.41937 -8.79808 -8.40694 -6.97913 -5.80476 -3.13593 0.70471 1.84019 2.54629 3.04220 3.27682 3.38948 3.46767 3.47089 3.83853 4.30801 4.49309 4.80187 4.88646 5.11806 5.14020 5.29124 5.34147 5.45510 5.50596 5.77160 5.77971 5.85003 6.20153 6.40226 6.56757 6.60860 6.77129 6.90283 7.07688 7.13329 7.46204 7.63631 7.75178 7.90419 8.09407 8.12177 8.32035 9.19359 9.80724 10.24674 11.23000 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037056 B = 0.003551 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.433735 B = 7883.400160 C = 8070.570438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 N -0.590 5.590 4 C -0.257 4.257 5 H 0.076 0.924 6 C 0.000 4.000 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.281 1.281 12 C 0.142 3.858 13 C 0.086 3.914 14 N -0.705 5.705 15 C 0.595 3.405 16 O -0.513 6.513 17 C -0.072 4.072 18 C -0.160 4.160 19 C 0.008 3.992 20 C -0.075 4.075 21 N -0.350 5.350 22 O 0.115 5.885 23 H 0.020 0.980 24 H 0.014 0.986 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.005 0.995 28 H 0.253 0.747 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.183 0.817 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 8.258 16.190 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 N -0.311 5.311 4 C -0.385 4.385 5 H 0.093 0.907 6 C -0.198 4.198 7 N -0.539 5.539 8 Si 0.730 3.270 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.207 1.207 12 C 0.014 3.986 13 C -0.039 4.039 14 N -0.355 5.355 15 C 0.376 3.624 16 O -0.389 6.389 17 C -0.138 4.138 18 C -0.182 4.182 19 C -0.149 4.149 20 C -0.132 4.132 21 N -0.052 5.052 22 O 0.043 5.957 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.200 0.800 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.802 8.241 16.358 18.405 hybrid contribution -0.087 0.319 -0.960 1.015 sum -1.889 8.559 15.398 17.718 Atomic orbital electron populations 1.22438 0.99136 0.98391 1.01238 1.20867 0.92558 0.84152 0.98415 1.44252 1.75454 1.10063 1.01322 1.19298 1.31835 1.03992 0.83423 0.90661 1.24755 0.97716 0.99856 0.97436 1.70162 1.27006 1.31635 1.25079 0.86332 0.80192 0.77908 0.82579 1.21531 1.21929 1.20696 1.20975 0.93469 0.94573 0.89628 1.22968 1.02839 0.95561 0.82503 1.46179 1.15412 1.48431 1.25507 1.16634 0.84787 0.79318 0.81617 1.90888 1.28555 1.62944 1.56556 1.24538 0.88677 1.04120 0.96488 1.22863 1.02158 0.98843 0.94341 1.23653 0.90984 1.01962 0.98347 1.20194 1.00825 0.97114 0.95106 1.73724 1.18750 1.07761 1.04983 1.84968 1.35536 1.51205 1.23985 0.96074 0.96738 0.89044 0.89254 0.97727 0.93665 0.92936 0.93625 0.91013 0.90850 0.76293 0.80014 0.89931 0.89718 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.58 37.15 0.36 -3.12 16 2 C 0.16 3.85 5.64 -4.05 -0.02 3.83 16 3 N -0.59 -13.90 2.54 -173.24 -0.44 -14.33 16 4 C -0.26 -6.69 9.70 -15.06 -0.15 -6.84 16 5 H 0.08 1.93 7.93 -52.49 -0.42 1.51 16 6 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 7 N -0.89 -24.44 8.54 55.49 0.47 -23.97 16 8 Si 0.90 21.16 29.62 -169.99 -5.03 16.12 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.14 2.66 5.82 -4.04 -0.02 2.64 16 13 C 0.09 1.57 5.88 -4.04 -0.02 1.55 16 14 N -0.70 -10.31 5.55 -61.36 -0.34 -10.65 16 15 C 0.59 9.22 7.82 -12.48 -0.10 9.13 16 16 O -0.51 -9.78 16.91 5.30 0.09 -9.69 16 17 C -0.07 -0.94 7.29 -36.32 -0.26 -1.20 16 18 C -0.16 -1.81 10.92 -38.94 -0.43 -2.24 16 19 C 0.01 0.09 7.31 -82.16 -0.60 -0.51 16 20 C -0.07 -0.49 10.47 36.01 0.38 -0.12 16 21 N -0.35 -4.38 12.04 33.52 0.40 -3.98 16 22 O 0.12 1.45 11.04 15.54 0.17 1.62 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.01 0.30 5.98 -51.93 -0.31 -0.01 16 25 H 0.09 2.39 6.28 -51.93 -0.33 2.06 16 26 H 0.09 2.33 5.87 -51.93 -0.31 2.02 16 27 H 0.00 0.10 7.97 -51.93 -0.41 -0.32 16 28 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 30 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 31 H 0.07 1.44 5.93 -51.93 -0.31 1.13 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.40 4.71 8.30 -40.82 -0.34 4.37 16 34 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -29.86 314.24 -5.82 -35.68 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.92 Total: 1.45 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.96 Total: 3.02 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.10 Total: -52.93 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.26 Total: -8.07 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.86 -5.82 -35.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663355411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.077 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds