Wall clock time and date at job start Mon Mar 30 2020 00:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47382 * 2 1 4 4 C 1.36939 * 120.00050 * 264.29125 * 3 2 1 5 5 H 1.08002 * 120.00234 * 188.63743 * 4 3 2 6 6 C 1.38811 * 120.00048 * 8.63692 * 4 3 2 7 7 N 1.31626 * 120.00122 * 24.60114 * 6 4 3 8 8 Si 1.86802 * 120.00233 * 204.60442 * 6 4 3 9 9 H 1.48500 * 109.46920 * 85.02382 * 8 6 4 10 10 H 1.48498 * 109.47095 * 205.02416 * 8 6 4 11 11 H 1.48503 * 109.46895 * 325.02439 * 8 6 4 12 12 C 1.46497 * 120.00151 * 84.28835 * 3 2 1 13 13 C 1.53005 * 109.47145 * 270.00453 * 12 3 2 14 14 N 1.46497 * 109.47145 * 179.97438 * 13 12 3 15 15 C 1.34781 * 120.00012 * 179.97438 * 14 13 12 16 16 O 1.21577 * 119.99944 * 359.72498 * 15 14 13 17 17 C 1.47506 * 119.99831 * 179.72437 * 15 14 13 18 18 C 1.36831 * 126.94254 * 179.71477 * 17 15 14 19 19 C 1.41262 * 103.84607 * 179.90766 * 18 17 15 20 20 C 1.50701 * 126.70277 * 180.12673 * 19 18 17 21 21 N 1.30133 * 106.59143 * 0.35754 * 19 18 17 22 22 O 1.20882 * 111.98074 * 359.76735 * 21 19 18 23 23 H 1.08993 * 109.47168 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47207 * 300.00217 * 1 2 3 25 25 H 1.09004 * 109.47415 * 59.99928 * 1 2 3 26 26 H 1.09004 * 109.47287 * 240.00329 * 2 1 3 27 27 H 1.08997 * 109.47662 * 119.99833 * 2 1 3 28 28 H 0.97000 * 120.00369 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47284 * 150.00165 * 12 3 2 30 30 H 1.08996 * 109.46939 * 30.00232 * 12 3 2 31 31 H 1.09001 * 109.47265 * 59.99700 * 13 12 3 32 32 H 1.09005 * 109.46924 * 299.99501 * 13 12 3 33 33 H 0.97002 * 120.00229 * 359.72183 * 14 13 12 34 34 H 1.07995 * 128.07131 * 0.02562 * 18 17 15 35 35 H 1.09001 * 109.46812 * 270.24775 * 20 19 18 36 36 H 1.08999 * 109.47204 * 30.24759 * 20 19 18 37 37 H 1.09001 * 109.47051 * 150.24945 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1714 6 6 2.0731 1.3645 -2.3874 7 7 1.0958 0.4857 -2.4603 8 14 3.0770 1.7731 -3.9088 9 1 4.3045 0.9377 -3.9309 10 1 2.2688 1.4976 -5.1238 11 1 3.4556 3.2088 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8474 1.5584 14 7 0.9587 3.5796 2.8211 15 6 -0.0786 4.3041 3.2854 16 8 -1.1163 4.3541 2.6539 17 6 0.0452 5.0365 4.5599 18 6 -0.9088 5.8144 5.1573 19 6 -0.2821 6.2705 6.3384 20 6 -0.8832 7.1705 7.3871 21 7 0.9172 5.7656 6.3414 22 8 1.1217 5.0792 5.3675 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.8971 0.0501 -3.3039 29 1 2.9552 2.8371 1.1838 30 1 2.3579 1.4133 2.0694 31 1 0.0220 2.1242 1.6369 32 1 0.6194 3.5481 0.7513 33 1 1.7867 3.5401 3.3248 34 1 -1.9082 6.0282 4.8084 35 1 -0.6798 8.2107 7.1329 36 1 -1.9606 7.0106 7.4289 37 1 -0.4439 6.9410 8.3579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663355411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:57 Heat of formation + Delta-G solvation = 32.984690 kcal Electronic energy + Delta-G solvation = -19955.647556 eV Core-core repulsion = 16736.833856 eV Total energy + Delta-G solvation = -3218.813700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.07284 -40.79052 -38.23297 -36.21228 -35.70020 -33.53675 -32.98782 -31.43784 -29.65790 -29.39432 -26.25891 -24.94327 -23.95269 -23.14254 -22.21171 -21.13301 -19.44710 -18.88762 -18.68765 -17.28202 -17.16320 -16.72796 -16.53313 -15.61249 -15.44364 -15.28925 -14.75275 -14.41144 -14.20555 -14.14928 -13.88089 -13.72629 -13.67744 -13.27393 -12.88549 -12.67306 -12.42703 -12.28105 -12.18824 -11.83939 -11.63983 -11.49870 -11.29683 -11.13593 -10.88140 -10.37280 -10.17743 -8.88171 -7.79880 -5.13451 -0.32393 0.98587 1.45231 1.51098 1.54469 1.60203 1.84891 2.13432 2.57597 3.06889 3.29471 3.40649 3.74736 3.88422 3.96806 4.23131 4.28197 4.37775 4.67082 4.69996 4.73720 4.74291 4.81071 4.94704 5.05670 5.15417 5.19436 5.20798 5.25125 5.41247 5.64301 5.82111 6.16877 6.25480 6.37076 6.88868 7.00287 7.22183 7.92136 8.31034 9.21684 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037056 B = 0.003551 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.433735 B = 7883.400160 C = 8070.570438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.606 5.606 4 C -0.263 4.263 5 H 0.076 0.924 6 C -0.049 4.049 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.288 1.288 10 H -0.301 1.301 11 H -0.275 1.275 12 C 0.143 3.857 13 C 0.107 3.893 14 N -0.693 5.693 15 C 0.600 3.400 16 O -0.554 6.554 17 C -0.087 4.087 18 C -0.150 4.150 19 C 0.016 3.984 20 C -0.076 4.076 21 N -0.367 5.367 22 O 0.110 5.890 23 H 0.033 0.967 24 H 0.024 0.976 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.246 0.754 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.419 0.581 34 H 0.199 0.801 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 9.320 18.222 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.041 3.959 3 N -0.327 5.327 4 C -0.392 4.392 5 H 0.094 0.906 6 C -0.245 4.245 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.215 1.215 10 H -0.228 1.228 11 H -0.201 1.201 12 C 0.016 3.984 13 C -0.019 4.019 14 N -0.344 5.344 15 C 0.384 3.616 16 O -0.432 6.432 17 C -0.153 4.153 18 C -0.172 4.172 19 C -0.142 4.142 20 C -0.133 4.133 21 N -0.071 5.071 22 O 0.039 5.961 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.257 0.743 34 H 0.216 0.784 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.413 9.315 18.431 20.700 hybrid contribution -0.212 0.060 -1.457 1.473 sum -1.625 9.375 16.975 19.460 Atomic orbital electron populations 1.22237 0.98971 0.98802 0.99861 1.20763 0.92645 0.84302 0.98146 1.44406 1.75627 1.10523 1.02158 1.19555 1.31215 1.03908 0.84564 0.90615 1.25393 0.98666 1.00601 0.99792 1.70325 1.28031 1.32791 1.25029 0.85432 0.78592 0.77799 0.79509 1.21485 1.22822 1.20066 1.21111 0.93644 0.95182 0.88477 1.22394 1.01887 0.94542 0.83060 1.45885 1.16216 1.47879 1.24447 1.16787 0.84025 0.78786 0.82045 1.90868 1.30005 1.64337 1.58034 1.24071 0.89848 1.05261 0.96115 1.23215 1.02450 0.97440 0.94141 1.24261 0.90065 1.01275 0.98563 1.20422 1.01939 0.96949 0.94034 1.73722 1.19895 1.08444 1.05063 1.84961 1.35325 1.51718 1.24067 0.94750 0.95733 0.92620 0.92241 0.95074 0.94423 0.91696 0.90834 0.92759 0.93981 0.74312 0.78409 0.88429 0.87568 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 9.58 71.98 0.69 -5.66 16 2 C 0.17 7.70 5.64 86.38 0.49 8.18 16 3 N -0.61 -28.22 2.54 -702.02 -1.78 -30.00 16 4 C -0.26 -13.70 9.70 84.03 0.82 -12.89 16 5 H 0.08 3.86 7.93 -2.91 -0.02 3.83 16 6 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 7 N -0.92 -51.17 8.54 21.65 0.18 -50.98 16 8 Si 0.96 44.00 29.62 68.60 2.03 46.04 16 9 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 C 0.14 5.14 5.82 86.38 0.50 5.64 16 13 C 0.11 3.87 5.88 86.38 0.51 4.37 16 14 N -0.69 -19.58 5.55 -466.30 -2.59 -22.17 16 15 C 0.60 18.25 7.82 86.69 0.68 18.93 16 16 O -0.55 -21.15 16.91 -3.96 -0.07 -21.22 16 17 C -0.09 -2.15 7.29 24.39 0.18 -1.98 16 18 C -0.15 -3.11 10.92 22.68 0.25 -2.86 16 19 C 0.02 0.30 7.31 43.55 0.32 0.62 16 20 C -0.08 -0.75 10.47 71.24 0.75 0.00 16 21 N -0.37 -8.49 12.04 -48.86 -0.59 -9.08 16 22 O 0.11 2.59 11.04 65.79 0.73 3.32 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.02 1.03 5.98 -2.39 -0.01 1.01 16 25 H 0.05 2.96 6.28 -2.38 -0.01 2.94 16 26 H 0.06 3.12 5.87 -2.38 -0.01 3.11 16 27 H 0.03 1.26 7.97 -2.39 -0.02 1.24 16 28 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 30 H 0.07 2.25 7.95 -2.39 -0.02 2.23 16 31 H 0.05 2.17 5.93 -2.39 -0.01 2.15 16 32 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.42 9.08 8.30 -92.71 -0.77 8.31 16 34 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -64.84 314.24 3.83 -61.01 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.32 Total: 10.96 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.59 Total: 12.14 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.77 Total: -112.24 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.66 Total: -17.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.04 kcal Total: -64.84 3.83 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663355411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.993 kcal (2) G-P(sol) polarization free energy of solvation -64.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds