Wall clock time and date at job start Mon Mar 30 2020 00:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36440 * 124.85352 * 2 1 4 4 C 1.34490 * 108.85859 * 179.97438 * 3 2 1 5 5 C 1.46688 * 106.33116 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94288 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00178 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99793 * 0.02562 * 6 5 4 9 9 C 1.46497 * 119.99638 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46900 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.47164 * 60.00014 * 10 9 8 12 12 O 1.42903 * 109.47171 * 299.99748 * 10 9 8 13 13 C 1.53003 * 109.47376 * 180.02562 * 10 9 8 14 14 N 1.46494 * 109.47283 * 185.00021 * 13 10 9 15 15 C 1.36937 * 120.00022 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00269 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00106 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99813 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99927 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46930 * 60.00673 * 19 17 15 21 21 H 1.48496 * 109.46947 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47190 * 300.00622 * 19 17 15 23 23 C 1.34662 * 124.84938 * 180.26830 * 2 1 3 24 24 H 1.08992 * 109.47426 * 90.01885 * 1 2 3 25 25 H 1.09006 * 109.47481 * 210.02454 * 1 2 3 26 26 H 1.09007 * 109.46589 * 330.02014 * 1 2 3 27 27 H 1.08005 * 125.57206 * 359.96404 * 3 2 1 28 28 H 1.08004 * 126.83511 * 180.02562 * 4 3 2 29 29 H 0.96996 * 120.00052 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47200 * 60.00094 * 9 8 6 31 31 H 1.08997 * 109.47487 * 300.00148 * 9 8 6 32 32 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 33 33 H 1.09005 * 109.46682 * 304.99749 * 13 10 9 34 34 H 1.08999 * 109.47221 * 64.99915 * 13 10 9 35 35 H 0.96999 * 120.00388 * 359.97438 * 14 13 10 36 36 H 0.96997 * 120.00150 * 179.97438 * 18 17 15 37 37 H 1.08004 * 125.80265 * 0.06109 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1196 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5461 -0.7178 0.0003 6 6 4.7283 -1.5959 0.0002 7 8 4.5884 -2.8041 -0.0005 8 7 5.9653 -1.0607 0.0009 9 6 7.1413 -1.9344 0.0014 10 6 8.4108 -1.0805 0.0027 11 1 8.4249 -0.4518 0.8930 12 8 8.4311 -0.2552 -1.1637 13 6 9.6391 -1.9928 0.0026 14 7 10.8515 -1.1796 0.1242 15 6 12.0809 -1.7823 0.1467 16 1 12.1567 -2.8572 0.0743 17 6 13.2298 -1.0117 0.2615 18 7 13.1374 0.2983 0.3492 19 14 14.9067 -1.8340 0.2928 20 1 15.1090 -2.5939 -0.9669 21 1 15.9634 -0.7986 0.4218 22 1 14.9809 -2.7631 1.4488 23 6 2.2345 -1.1051 -0.0052 24 1 -0.3634 -0.0003 -1.0276 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 1.8828 2.1373 -0.0006 28 1 4.3982 1.4016 0.0011 29 1 6.0768 -0.0972 0.0018 30 1 7.1270 -2.5634 -0.8887 31 1 7.1261 -2.5636 0.8912 32 1 8.4201 -0.7488 -1.9951 33 1 9.5789 -2.6833 0.8438 34 1 9.6723 -2.5573 -0.9293 35 1 10.7835 -0.2141 0.1889 36 1 13.9401 0.8368 0.4298 37 1 1.8766 -2.1241 -0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667809718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:19 Heat of formation + Delta-G solvation = -26.367259 kcal Electronic energy + Delta-G solvation = -19323.572538 eV Core-core repulsion = 16102.185145 eV Total energy + Delta-G solvation = -3221.387393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41138 -39.17639 -37.43166 -34.24488 -33.89478 -33.02840 -31.24621 -29.53092 -28.99437 -27.00854 -25.20928 -22.99281 -21.94643 -21.31891 -20.33639 -19.59257 -18.16701 -17.11409 -16.39796 -15.90331 -15.82834 -15.62539 -15.02048 -14.47691 -14.35132 -14.30563 -13.63469 -13.35915 -13.33324 -12.92231 -12.83268 -12.76535 -12.47501 -12.26486 -12.14541 -11.75853 -10.93001 -10.77435 -10.53653 -10.17786 -9.93903 -9.75579 -9.42194 -9.01096 -8.86677 -8.78498 -8.51274 -6.90119 -5.72661 -3.02084 1.66575 2.22525 2.52775 3.44705 3.46950 3.51185 3.52521 3.61663 4.33323 4.59544 4.65300 4.68295 4.74313 4.80271 4.93879 4.95788 5.16412 5.27680 5.35438 5.59771 5.69181 5.71363 5.82336 5.98305 6.05426 6.25684 6.51610 6.56476 6.60656 6.74260 6.79015 6.95383 7.71411 7.73071 8.01706 8.44047 8.45701 9.57037 10.14229 10.50050 11.49759 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.056810 B = 0.002825 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.750403 B = 9908.344693 C =10275.747234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.166 4.166 5 C -0.232 4.232 6 C 0.588 3.412 7 O -0.560 6.560 8 N -0.716 5.716 9 C 0.091 3.909 10 C 0.089 3.911 11 H 0.105 0.895 12 O -0.553 6.553 13 C 0.127 3.873 14 N -0.726 5.726 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.071 3.929 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.373 0.627 33 H 0.029 0.971 34 H 0.023 0.977 35 H 0.388 0.612 36 H 0.256 0.744 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.934 1.687 -1.169 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.125 5.125 3 C -0.146 4.146 4 C -0.190 4.190 5 C -0.242 4.242 6 C 0.377 3.623 7 O -0.440 6.440 8 N -0.367 5.367 9 C -0.033 4.033 10 C 0.029 3.971 11 H 0.122 0.878 12 O -0.358 6.358 13 C -0.002 4.002 14 N -0.371 5.371 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.064 4.064 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.184 0.816 28 H 0.165 0.835 29 H 0.240 0.760 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.220 0.780 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.222 1.226 -0.716 27.259 hybrid contribution 0.970 -0.091 -0.332 1.029 sum -26.252 1.135 -1.049 26.298 Atomic orbital electron populations 1.22112 0.76949 1.04650 1.03533 1.43619 1.06743 1.05965 1.56214 1.21752 0.90590 0.91260 1.11011 1.22120 0.96323 0.93275 1.07315 1.20382 0.92574 0.93409 1.17811 1.17383 0.82434 0.86949 0.75527 1.90757 1.86738 1.14789 1.51759 1.45679 1.05013 1.10816 1.75204 1.22057 0.84737 0.93465 1.03057 1.22398 0.92191 0.92882 0.89595 0.87765 1.86570 1.96837 1.36654 1.15711 1.21208 0.86763 0.93449 0.98755 1.42238 1.00096 1.06105 1.88647 1.19185 0.83820 0.91691 1.42724 0.91258 1.24763 0.97844 0.95459 1.02870 1.69666 1.27961 1.03362 1.56927 0.86247 0.83956 0.78008 0.77836 1.21260 1.21677 1.21257 1.21775 0.89842 0.91717 1.03043 0.90671 0.89613 0.89591 0.81609 0.83452 0.75998 0.91186 0.90554 0.78024 0.95354 0.95905 0.77727 0.93446 0.80888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.03 59.85 0.66 0.90 16 2 N -0.45 -3.50 3.09 -124.53 -0.38 -3.88 16 3 C -0.02 -0.16 11.34 -16.83 -0.19 -0.35 16 4 C -0.17 -1.68 10.56 -37.50 -0.40 -2.07 16 5 C -0.23 -2.86 6.29 -103.35 -0.65 -3.51 16 6 C 0.59 8.77 7.81 -12.59 -0.10 8.67 16 7 O -0.56 -10.13 16.91 5.26 0.09 -10.05 16 8 N -0.72 -9.70 5.44 -61.44 -0.33 -10.03 16 9 C 0.09 1.31 5.34 -4.04 -0.02 1.29 16 10 C 0.09 1.44 3.09 -26.73 -0.08 1.36 16 11 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 12 O -0.55 -9.08 13.03 -35.23 -0.46 -9.54 16 13 C 0.13 2.54 5.90 -4.04 -0.02 2.51 16 14 N -0.73 -18.77 5.55 -59.91 -0.33 -19.11 16 15 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 19 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.07 0.73 11.12 -16.84 -0.19 0.55 16 24 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 26 H 0.09 0.16 8.13 -51.93 -0.42 -0.26 16 27 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 28 H 0.15 1.28 7.70 -52.48 -0.40 0.88 16 29 H 0.40 4.92 7.47 -40.82 -0.30 4.61 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.37 5.14 9.05 45.56 0.41 5.55 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.39 10.71 7.67 -40.82 -0.31 10.40 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -36.10 325.16 -6.44 -42.54 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.38 Total: 13.69 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.24 Total: 1.77 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.33 Total: -61.03 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.37 Total: -19.58 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.10 -6.44 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667809718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.172 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds