Wall clock time and date at job start Mon Mar 30 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46692 * 2 1 4 4 C 1.36931 * 120.00308 * 275.30453 * 3 2 1 5 5 H 1.08008 * 119.99752 * 37.58281 * 4 3 2 6 6 C 1.38806 * 120.00312 * 217.58568 * 4 3 2 7 7 N 1.31622 * 120.00160 * 21.41936 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 201.42338 * 6 4 3 9 9 H 1.48498 * 109.46903 * 59.99853 * 8 6 4 10 10 H 1.48504 * 109.47024 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47183 * 299.99612 * 8 6 4 12 12 C 1.46498 * 119.99737 * 95.30896 * 3 2 1 13 13 C 1.52996 * 109.47599 * 269.99670 * 12 3 2 14 14 N 1.46498 * 109.47599 * 180.02562 * 13 12 3 15 15 C 1.34779 * 119.99686 * 179.97438 * 14 13 12 16 16 O 1.21608 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.47422 * 119.99654 * 180.02562 * 15 14 13 18 18 N 1.36068 * 126.44610 * 359.68929 * 17 15 14 19 19 C 1.29935 * 108.47505 * 179.86272 * 18 17 15 20 20 O 1.34051 * 109.24537 * 0.40456 * 19 18 17 21 21 C 1.34256 * 108.22377 * 359.75195 * 20 19 18 22 22 C 1.50697 * 126.52658 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47825 * 299.99970 * 1 2 3 25 25 H 1.09006 * 109.47387 * 60.00040 * 1 2 3 26 26 H 1.08992 * 109.47460 * 240.00310 * 2 1 3 27 27 H 1.09000 * 109.47031 * 119.99698 * 2 1 3 28 28 H 0.96995 * 120.00027 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47263 * 149.99350 * 12 3 2 30 30 H 1.09007 * 109.47591 * 29.99736 * 12 3 2 31 31 H 1.09005 * 109.47074 * 59.99564 * 13 12 3 32 32 H 1.09007 * 109.46703 * 300.00610 * 13 12 3 33 33 H 0.96991 * 119.99898 * 0.02562 * 14 13 12 34 34 H 1.08005 * 125.37990 * 180.12464 * 19 18 17 35 35 H 1.09000 * 109.47246 * 270.03968 * 22 21 20 36 36 H 1.08997 * 109.47359 * 30.03560 * 22 21 20 37 37 H 1.09006 * 109.47690 * 150.03609 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3727 7 7 4.3026 2.7982 -0.6489 8 14 3.0993 4.2795 -2.6585 9 1 1.9627 5.1785 -2.3344 10 1 4.3618 5.0615 -2.6660 11 1 2.8845 3.6726 -3.9966 12 6 2.3730 2.0327 1.2633 13 6 1.1424 2.7383 1.8366 14 7 1.4973 3.3902 3.0996 15 6 0.5649 4.0778 3.7883 16 8 -0.5711 4.1566 3.3616 17 6 0.9222 4.7343 5.0590 18 7 2.1442 4.7260 5.6575 19 6 2.0687 5.4138 6.7573 20 8 0.8179 5.8722 6.9068 21 6 0.0905 5.4577 5.8572 22 6 -1.3691 5.7393 5.6101 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3635 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.0487 3.4032 -0.7828 29 1 3.1615 2.7642 1.0861 30 1 2.7253 1.2834 1.9722 31 1 0.3539 2.0068 2.0138 32 1 0.7901 3.4876 1.1277 33 1 2.4035 3.3277 3.4397 34 1 2.8837 5.5850 7.4450 35 1 -1.9727 4.9529 6.0631 36 1 -1.6336 6.7001 6.0518 37 1 -1.5570 5.7689 4.5368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691010458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:09 Heat of formation + Delta-G solvation = -23.504007 kcal Electronic energy + Delta-G solvation = -20251.775700 eV Core-core repulsion = 17030.512467 eV Total energy + Delta-G solvation = -3221.263233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.44046 -40.57322 -38.12417 -35.98127 -35.58234 -33.83980 -33.37758 -31.41622 -29.62864 -28.16913 -26.25063 -24.92333 -23.53794 -22.58264 -22.16492 -21.48963 -19.38651 -18.46781 -17.92701 -17.19697 -17.10221 -16.79657 -16.31983 -15.72914 -15.61036 -15.36378 -15.16095 -14.49293 -14.30816 -14.10711 -13.96512 -13.77623 -13.36529 -13.23873 -13.02051 -12.62138 -12.45025 -12.41333 -12.32117 -12.03957 -11.84308 -11.71535 -11.52779 -11.19095 -10.55425 -10.21253 -9.85606 -8.61454 -7.86755 -5.50138 0.03680 1.06205 1.43625 1.47497 1.53263 1.57253 2.12456 2.21984 2.49685 3.10767 3.21823 3.62901 3.69442 3.86143 4.23326 4.28881 4.36128 4.44448 4.46436 4.57745 4.70353 4.81542 4.84467 4.86581 5.08203 5.08803 5.16722 5.20839 5.28927 5.36119 5.56637 5.63964 5.72189 6.31081 6.44344 6.61541 7.07313 7.14490 7.81188 8.34073 9.09402 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.004780 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.307414 B = 5855.961958 C = 6359.410604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.272 4.272 5 H 0.055 0.945 6 C -0.030 4.030 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.271 1.271 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.700 5.700 15 C 0.590 3.410 16 O -0.569 6.569 17 C -0.109 4.109 18 N -0.499 5.499 19 C 0.198 3.802 20 O -0.196 6.196 21 C 0.048 3.952 22 C -0.075 4.075 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.411 0.589 34 H 0.308 0.692 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 4.774 16.734 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.402 4.402 5 H 0.073 0.927 6 C -0.228 4.228 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.197 1.197 12 C 0.018 3.982 13 C -0.005 4.005 14 N -0.350 5.350 15 C 0.377 3.623 16 O -0.450 6.450 17 C -0.227 4.227 18 N -0.228 5.228 19 C -0.031 4.031 20 O -0.083 6.083 21 C -0.009 4.009 22 C -0.131 4.131 23 H 0.088 0.912 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.247 0.753 34 H 0.322 0.678 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.038 4.543 16.138 17.819 hybrid contribution 0.217 0.925 -0.479 1.064 sum -5.822 5.468 15.659 17.578 Atomic orbital electron populations 1.22211 0.97776 1.00931 1.00471 1.21025 0.93342 0.85313 0.99258 1.43842 1.76431 1.09681 1.01853 1.19157 1.04429 1.21901 0.94726 0.92725 1.25805 0.93957 1.02912 1.00103 1.70088 1.03602 1.37946 1.43931 0.85587 0.76525 0.79886 0.79966 1.21194 1.21526 1.19682 1.20888 0.94345 0.96690 0.86292 1.22017 1.00141 0.95496 0.82854 1.45831 1.13924 1.51964 1.23295 1.17145 0.84578 0.78091 0.82460 1.90727 1.20915 1.63030 1.70299 1.21348 0.91801 1.09521 1.00032 1.70716 1.22700 1.20476 1.08876 1.29203 0.85472 0.92362 0.96055 1.84411 1.22799 1.60326 1.40769 1.24072 0.96766 0.94957 0.85139 1.20660 0.82685 1.04996 1.04771 0.91158 0.94020 0.94509 0.94341 0.93181 0.93717 0.91083 0.93979 0.92651 0.94628 0.75305 0.67775 0.87694 0.87291 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 10.21 71.98 0.73 -4.87 16 2 C 0.14 5.69 6.44 86.38 0.56 6.25 16 3 N -0.60 -29.78 2.43 -702.01 -1.71 -31.49 16 4 C -0.27 -14.98 9.45 84.03 0.79 -14.18 16 5 H 0.06 3.02 7.92 -2.91 -0.02 3.00 16 6 C -0.03 -1.65 4.95 84.86 0.42 -1.23 16 7 N -0.91 -52.64 11.47 21.65 0.25 -52.39 16 8 Si 0.95 45.04 29.60 68.60 2.03 47.07 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.15 6.79 5.45 86.38 0.47 7.26 16 13 C 0.12 5.21 6.00 86.38 0.52 5.73 16 14 N -0.70 -26.72 5.55 -466.37 -2.59 -29.31 16 15 C 0.59 22.03 7.81 86.66 0.68 22.71 16 16 O -0.57 -23.44 14.80 -4.06 -0.06 -23.50 16 17 C -0.11 -3.33 6.99 40.41 0.28 -3.04 16 18 N -0.50 -13.29 11.06 -305.14 -3.37 -16.66 16 19 C 0.20 3.29 13.19 130.52 1.72 5.01 16 20 O -0.20 -3.74 10.73 0.38 0.00 -3.74 16 21 C 0.05 1.16 7.44 25.18 0.19 1.35 16 22 C -0.08 -1.42 9.88 71.24 0.70 -0.72 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.04 1.52 6.64 -2.39 -0.02 1.51 16 25 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 27 H 0.05 1.92 7.83 -2.39 -0.02 1.91 16 28 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.07 3.78 5.52 -2.38 -0.01 3.77 16 30 H 0.04 1.83 7.86 -2.38 -0.02 1.81 16 31 H 0.06 2.36 6.64 -2.38 -0.02 2.35 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.41 14.70 8.20 -92.72 -0.76 13.94 16 34 H 0.31 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.09 2.21 6.48 -2.38 -0.02 2.20 16 Total: -1.00 -70.28 317.03 1.95 -68.33 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.33 Total: 17.42 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.07 Total: 24.27 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -7.42 Total: -129.85 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.28 1.95 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691010458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.830 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds