Wall clock time and date at job start Mon Mar 30 2020 00:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.08995 * 109.47843 * 300.00405 * 13 2 1 15 15 C 1.52998 * 109.47053 * 179.97438 * 13 2 1 16 16 N 1.46504 * 109.47143 * 60.00410 * 13 2 1 17 17 C 1.34774 * 120.00240 * 204.99720 * 16 13 2 18 18 O 1.21283 * 119.99643 * 359.97438 * 17 16 13 19 19 C 1.50694 * 119.99993 * 179.97438 * 17 16 13 20 20 C 1.50707 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.41371 * 126.80475 * 125.00015 * 20 19 17 22 22 C 1.35453 * 103.98679 * 180.02562 * 21 20 19 23 23 O 1.34042 * 106.44432 * 359.97438 * 22 21 20 24 24 N 1.20918 * 111.56600 * 359.71187 * 23 22 21 25 25 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 29 29 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47233 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47294 * 299.99979 * 15 13 2 32 32 H 1.08998 * 109.47317 * 60.00192 * 15 13 2 33 33 H 0.97005 * 119.99919 * 24.99503 * 16 13 2 34 34 H 1.08998 * 109.47224 * 299.99698 * 19 17 16 35 35 H 1.08992 * 109.47529 * 60.00354 * 19 17 16 36 36 H 1.08000 * 128.00767 * 0.02883 * 21 20 19 37 37 H 1.07998 * 126.77692 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.5139 0.1823 5.8845 11 1 3.8842 -0.3287 5.9187 12 1 3.0951 1.6924 4.8356 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2493 15 6 3.5699 -0.7208 -1.2495 16 7 1.5517 -0.0307 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7119 -1.8797 -3.6609 19 6 0.9202 0.0072 -4.8367 20 6 0.8690 -0.9612 -5.9902 21 6 -0.2525 -1.2573 -6.7984 22 6 0.2121 -2.1752 -7.6795 23 8 1.5032 -2.3715 -7.3776 24 7 1.8504 -1.6865 -6.4436 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1526 29 1 3.2330 -2.4001 4.2460 30 1 3.9333 -1.2343 -2.1397 31 1 3.9329 0.3070 -1.2498 32 1 3.9337 -1.2343 -0.3595 33 1 1.3210 0.9105 -2.4019 34 1 -0.0791 0.3990 -4.6471 35 1 1.5924 0.8295 -5.0818 36 1 -1.2490 -0.8466 -6.7293 37 1 -0.3474 -2.6544 -8.4693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725088278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:32 Heat of formation + Delta-G solvation = 6.867250 kcal Electronic energy + Delta-G solvation = -20022.819771 eV Core-core repulsion = 16802.873535 eV Total energy + Delta-G solvation = -3219.946237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.81933 -40.92370 -38.33042 -35.68173 -35.43665 -33.58620 -32.57902 -31.54371 -30.15775 -29.69320 -25.91990 -24.59845 -23.98786 -22.70293 -21.55477 -21.09205 -19.38381 -18.65709 -18.60839 -17.89239 -17.05240 -16.56067 -16.42869 -15.64364 -15.42983 -15.19963 -14.82489 -14.65035 -14.19636 -14.09054 -13.90038 -13.46663 -13.28331 -13.13842 -12.92114 -12.74876 -12.58832 -12.26195 -12.15746 -12.14960 -11.73165 -11.47374 -11.18936 -10.98569 -10.75902 -10.47292 -10.09143 -9.01851 -7.92070 -5.21385 0.74357 1.32606 1.48867 1.50329 1.58552 1.66316 2.20565 2.57808 2.61128 3.24782 3.42205 3.68482 3.77439 3.94849 4.05992 4.19485 4.28288 4.34649 4.45284 4.51180 4.58569 4.68865 4.79096 4.87222 4.91994 4.95938 5.05453 5.18482 5.25042 5.28886 5.50726 5.52565 5.60210 6.28617 6.60846 7.31572 7.34694 7.47981 8.08404 8.31404 9.31654 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052550 B = 0.003357 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.698759 B = 8339.588280 C = 8536.193164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.064 0.936 4 N -0.733 5.733 5 C -0.232 4.232 6 H 0.082 0.918 7 C -0.078 4.078 8 N -0.972 5.972 9 Si 0.972 3.028 10 H -0.289 1.289 11 H -0.301 1.301 12 H -0.266 1.266 13 C 0.152 3.848 14 H 0.053 0.947 15 C -0.143 4.143 16 N -0.702 5.702 17 C 0.508 3.492 18 O -0.583 6.583 19 C -0.055 4.055 20 C 0.003 3.997 21 C -0.233 4.233 22 C -0.057 4.057 23 O 0.082 5.918 24 N -0.391 5.391 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.370 0.630 29 H 0.249 0.751 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.418 0.582 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.205 0.795 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 7.827 -23.056 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.082 0.918 4 N -0.373 5.373 5 C -0.364 4.364 6 H 0.100 0.900 7 C -0.270 4.270 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.217 1.217 11 H -0.228 1.228 12 H -0.190 1.190 13 C 0.046 3.954 14 H 0.071 0.929 15 C -0.201 4.201 16 N -0.355 5.355 17 C 0.295 3.705 18 O -0.462 6.462 19 C -0.095 4.095 20 C -0.156 4.156 21 C -0.254 4.254 22 C -0.138 4.138 23 O 0.015 5.985 24 N -0.095 5.095 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.202 0.798 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.256 0.744 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.222 0.778 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -7.894 7.024 -22.620 24.967 hybrid contribution -0.471 0.061 1.253 1.340 sum -8.365 7.085 -21.368 24.016 Atomic orbital electron populations 1.22295 0.97251 1.00451 1.01357 1.20579 0.93138 0.95604 0.84754 0.91794 1.42513 1.78508 1.10219 1.06053 1.19612 1.34713 0.94275 0.87776 0.89974 1.25561 1.03167 0.96794 1.01511 1.69837 1.52962 1.10261 1.29271 0.85153 0.76655 0.78191 0.79846 1.21669 1.22757 1.19021 1.20841 0.93758 0.96221 0.84597 0.92888 1.21919 0.95594 1.02096 1.00504 1.45770 1.66727 1.14659 1.08361 1.21065 0.77103 0.87036 0.85274 1.90745 1.51422 1.18576 1.85470 1.20152 1.07439 0.95989 0.85882 1.23479 0.91004 1.00575 1.00511 1.23146 1.01799 1.02943 0.97538 1.26938 0.84355 0.99673 1.02796 1.84810 1.27476 1.49348 1.36840 1.73911 1.26009 1.07623 1.01962 0.93773 0.90227 0.95205 0.79827 0.94214 0.94053 0.91490 0.93201 0.74411 0.82442 0.84635 0.77783 0.72391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.33 71.98 0.67 -4.37 16 2 C 0.17 6.20 2.52 44.99 0.11 6.31 16 3 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 4 N -0.73 -36.11 4.43 -322.96 -1.43 -37.54 16 5 C -0.23 -12.48 9.93 84.03 0.83 -11.64 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 8 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 9 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 10 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.15 5.23 2.21 44.99 0.10 5.33 16 14 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 15 C -0.14 -5.20 9.32 71.98 0.67 -4.53 16 16 N -0.70 -17.39 4.38 -442.55 -1.94 -19.33 16 17 C 0.51 13.93 7.79 87.66 0.68 14.61 16 18 O -0.58 -22.89 15.27 -3.04 -0.05 -22.94 16 19 C -0.05 -0.91 6.30 29.10 0.18 -0.73 16 20 C 0.00 0.07 6.10 43.58 0.27 0.34 16 21 C -0.23 -3.33 11.12 22.40 0.25 -3.08 16 22 C -0.06 -0.76 12.30 67.18 0.83 0.07 16 23 O 0.08 1.93 11.20 71.62 0.80 2.73 16 24 N -0.39 -11.28 11.48 -49.56 -0.57 -11.85 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.90 7.45 -2.39 -0.02 1.88 16 27 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.37 20.34 7.59 -92.70 -0.70 19.64 16 29 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 2.11 7.45 -2.39 -0.02 2.09 16 33 H 0.42 6.90 8.39 -92.70 -0.78 6.12 16 34 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.21 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.26 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -80.57 320.72 3.80 -76.77 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.39 Total: 25.85 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.06 Total: -1.69 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -3.66 Total: -128.51 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.76 Total: -20.21 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -80.57 3.80 -76.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725088278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.634 kcal (2) G-P(sol) polarization free energy of solvation -80.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds