Wall clock time and date at job start Mon Mar 30 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.36940 * 120.00276 * 274.99870 * 4 2 1 6 6 H 1.08002 * 119.99359 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00232 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47288 * 59.99896 * 9 7 5 11 11 H 1.48501 * 109.46947 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46912 * 300.00063 * 9 7 5 13 13 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 14 14 H 1.09001 * 109.46992 * 174.99449 * 13 2 1 15 15 C 1.52996 * 109.47276 * 294.99872 * 13 2 1 16 16 N 1.46510 * 109.47089 * 54.99980 * 13 2 1 17 17 C 1.34774 * 119.99669 * 154.99962 * 16 13 2 18 18 O 1.21277 * 120.00249 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99604 * 180.02562 * 17 16 13 20 20 C 1.50703 * 109.46910 * 180.02562 * 19 17 16 21 21 C 1.41371 * 126.80382 * 125.00097 * 20 19 17 22 22 C 1.35444 * 103.99055 * 179.97438 * 21 20 19 23 23 O 1.34049 * 106.44566 * 359.97438 * 22 21 20 24 24 N 1.20922 * 111.55862 * 359.70839 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 29 29 H 0.96996 * 120.00427 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47120 * 180.02562 * 15 13 2 31 31 H 1.08998 * 109.47375 * 300.00219 * 15 13 2 32 32 H 1.09000 * 109.46912 * 60.00396 * 15 13 2 33 33 H 0.96996 * 119.99772 * 335.00277 * 16 13 2 34 34 H 1.08999 * 109.47188 * 299.99543 * 19 17 16 35 35 H 1.08996 * 109.47321 * 59.99804 * 19 17 16 36 36 H 1.08009 * 128.00565 * 359.95972 * 21 20 19 37 37 H 1.07998 * 126.78359 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3758 6 1 1.8919 1.0402 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.9263 -1.9387 3.4496 9 14 2.7901 0.2698 5.1183 10 1 1.4673 0.8056 5.5288 11 1 3.3003 -0.6484 6.1680 12 1 3.7445 1.3930 4.9372 13 6 2.0401 -0.7212 -1.2492 14 1 3.1264 -0.6441 -1.2952 15 6 1.6354 -2.1954 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1936 -3.6275 18 8 3.1469 -0.7855 -3.7062 19 6 1.4907 0.4423 -4.8548 20 6 2.3906 0.1980 -6.0386 21 6 2.0290 -0.3977 -7.2687 22 6 3.1768 -0.3869 -7.9877 23 8 4.1086 0.1774 -7.2066 24 7 3.6532 0.5001 -6.1339 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 3.2503 -2.3958 4.2414 30 1 1.9991 -2.7092 -2.0779 31 1 2.0699 -2.6549 -0.3004 32 1 0.5490 -2.2723 -1.1422 33 1 0.6119 0.3703 -2.3794 34 1 0.5108 0.0057 -5.0476 35 1 1.3851 1.5151 -4.6934 36 1 1.0614 -0.7744 -7.5661 37 1 3.3142 -0.7595 -8.9920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725088319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:40 Heat of formation + Delta-G solvation = 10.617719 kcal Electronic energy + Delta-G solvation = -20026.618119 eV Core-core repulsion = 16806.834514 eV Total energy + Delta-G solvation = -3219.783604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.82564 -40.97572 -38.49934 -35.68551 -35.45165 -33.61879 -32.58075 -31.47958 -29.90460 -29.66702 -26.17588 -25.07239 -24.00654 -22.86158 -21.25771 -20.66994 -19.48528 -18.67866 -18.61389 -17.93891 -16.97934 -16.66226 -16.27670 -15.84304 -15.82321 -15.35436 -14.85626 -14.55737 -14.22933 -13.97542 -13.80446 -13.59040 -13.20086 -13.10194 -12.98634 -12.77796 -12.64014 -12.19471 -12.16175 -12.00742 -11.67335 -11.60981 -11.19122 -10.95319 -10.77666 -10.47851 -10.09830 -9.04450 -7.94704 -5.23864 0.74253 1.32325 1.46952 1.50163 1.55993 1.64336 2.20525 2.56963 2.59879 3.24319 3.38965 3.68450 3.83034 3.96283 4.00309 4.07177 4.27585 4.31758 4.44600 4.50071 4.60016 4.67397 4.71245 4.87517 4.91434 4.96848 5.03283 5.19120 5.24039 5.27009 5.48599 5.55987 5.64342 6.27397 6.58625 7.29604 7.33686 7.48078 8.08376 8.31114 9.28808 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042480 B = 0.003394 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.967804 B = 8246.974771 C = 8387.285085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.044 0.956 4 N -0.736 5.736 5 C -0.241 4.241 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.973 3.027 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.281 1.281 13 C 0.150 3.850 14 H 0.047 0.953 15 C -0.147 4.147 16 N -0.704 5.704 17 C 0.507 3.493 18 O -0.583 6.583 19 C -0.055 4.055 20 C 0.003 3.997 21 C -0.232 4.232 22 C -0.057 4.057 23 O 0.082 5.918 24 N -0.392 5.392 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.376 0.624 29 H 0.251 0.749 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.417 0.583 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.206 0.794 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 4.660 -24.387 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.372 4.372 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.224 1.224 12 H -0.207 1.207 13 C 0.044 3.956 14 H 0.065 0.935 15 C -0.206 4.206 16 N -0.358 5.358 17 C 0.293 3.707 18 O -0.462 6.462 19 C -0.095 4.095 20 C -0.156 4.156 21 C -0.253 4.253 22 C -0.138 4.138 23 O 0.015 5.985 24 N -0.097 5.097 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.210 0.790 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.223 0.777 37 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -7.624 4.978 -23.477 25.181 hybrid contribution -0.348 -0.377 0.966 1.094 sum -7.973 4.601 -22.511 24.320 Atomic orbital electron populations 1.22348 0.96133 1.01745 1.01401 1.20547 0.94199 0.94697 0.84957 0.93748 1.42668 1.78742 1.10523 1.05879 1.19593 1.35196 0.94320 0.88132 0.90437 1.25560 1.02824 0.96900 1.01555 1.69812 1.52465 1.10296 1.29560 0.85214 0.78036 0.77212 0.79307 1.20045 1.22377 1.20694 1.20832 0.96945 0.93234 0.84590 0.93475 1.22005 1.02490 0.95286 1.00775 1.45938 1.26317 1.56616 1.06967 1.21119 0.84386 0.79694 0.85457 1.90742 1.24592 1.44691 1.86185 1.20161 0.98917 1.04716 0.85697 1.23474 0.91485 1.02123 0.98510 1.23144 1.03032 1.06575 0.92549 1.26950 0.87143 0.99116 1.00572 1.84816 1.37487 1.57490 1.18675 1.73921 1.13856 1.20309 1.01572 0.92879 0.93890 0.90000 0.79039 0.94047 0.93361 0.93272 0.90363 0.74374 0.82258 0.84758 0.77667 0.72347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.01 71.98 0.65 -4.12 16 2 C 0.16 6.29 2.93 44.99 0.13 6.42 16 3 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -36.96 5.03 -322.95 -1.63 -38.58 16 5 C -0.24 -13.33 9.93 84.03 0.83 -12.50 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 8 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 9 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C 0.15 5.27 2.62 44.99 0.12 5.39 16 14 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 15 C -0.15 -5.07 9.00 71.98 0.65 -4.43 16 16 N -0.70 -17.93 4.99 -442.53 -2.21 -20.14 16 17 C 0.51 14.18 7.79 87.66 0.68 14.86 16 18 O -0.58 -23.23 15.27 -3.02 -0.05 -23.27 16 19 C -0.06 -0.94 6.30 29.10 0.18 -0.76 16 20 C 0.00 0.07 6.10 43.58 0.27 0.33 16 21 C -0.23 -3.27 11.12 22.40 0.25 -3.03 16 22 C -0.06 -0.76 12.30 67.17 0.83 0.07 16 23 O 0.08 1.95 11.20 71.55 0.80 2.75 16 24 N -0.39 -11.53 11.48 -49.55 -0.57 -12.10 16 25 H 0.05 1.64 6.56 -2.39 -0.02 1.62 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.68 6.29 -2.39 -0.02 1.66 16 28 H 0.38 20.34 5.77 -92.71 -0.54 19.81 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 1.97 6.29 -2.39 -0.02 1.95 16 32 H 0.08 2.32 6.56 -2.39 -0.02 2.30 16 33 H 0.42 7.24 6.58 -92.71 -0.61 6.63 16 34 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.26 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -82.03 313.02 3.68 -78.36 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.04 Total: 26.04 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.05 Total: -1.69 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -4.12 Total: -130.66 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.76 Total: -20.52 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -82.03 3.68 -78.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725088319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.975 kcal (2) G-P(sol) polarization free energy of solvation -82.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds