Wall clock time and date at job start Mon Mar 30 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47169 * 2 1 4 4 C 1.38013 * 119.99689 * 179.97438 * 3 2 1 5 5 N 1.32943 * 120.00342 * 179.97438 * 4 3 2 6 6 C 1.32903 * 119.96315 * 180.02562 * 5 4 3 7 7 N 1.38011 * 120.00852 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00171 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47059 * 155.00015 * 8 7 6 10 10 C 1.52998 * 109.47009 * 275.00212 * 8 7 6 11 11 N 1.32983 * 119.98395 * 359.75152 * 6 5 4 12 12 C 1.32769 * 120.01615 * 0.50767 * 11 6 5 13 13 O 1.35296 * 119.98464 * 179.76795 * 12 11 6 14 14 C 1.34904 * 118.00120 * 179.72375 * 13 12 11 15 15 H 1.07999 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.38687 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47216 * 120.00060 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00213 * 18 16 14 22 22 N 1.32797 * 120.03069 * 359.49149 * 12 11 6 23 23 H 1.09005 * 109.46916 * 299.99972 * 1 2 3 24 24 H 1.09005 * 109.47572 * 59.99675 * 1 2 3 25 25 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47174 * 240.00478 * 2 1 3 27 27 H 1.08997 * 109.47397 * 119.99704 * 2 1 3 28 28 H 0.97002 * 119.99767 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99839 * 0.02562 * 7 6 5 30 30 H 1.09002 * 109.46739 * 35.00395 * 8 7 6 31 31 H 1.08997 * 109.47359 * 60.00246 * 9 8 7 32 32 H 1.08995 * 109.46875 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47061 * 300.00411 * 9 8 7 34 34 H 1.08996 * 109.47492 * 60.00191 * 10 8 7 35 35 H 1.09009 * 109.46514 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47100 * 299.99564 * 10 8 7 37 37 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3752 1.6334 0.0005 5 7 3.8185 2.8867 0.0000 6 6 5.1253 3.1286 0.0000 7 7 5.5865 4.4293 0.0000 8 6 7.0271 4.6958 -0.0005 9 6 7.2906 6.0742 -0.6101 10 6 7.5521 4.6646 1.4362 11 7 5.9884 2.1169 0.0055 12 6 5.5449 0.8655 0.0008 13 8 6.4237 -0.1633 0.0017 14 6 5.9293 -1.4185 0.0026 15 1 4.8612 -1.5782 0.0030 16 6 6.7927 -2.5038 0.0029 17 7 8.0934 -2.3094 0.0030 18 14 6.1082 -4.2419 0.0048 19 1 4.6241 -4.1894 0.0051 20 1 6.5774 -4.9600 -1.2073 21 1 6.5789 -4.9579 1.2176 22 7 4.2393 0.6231 0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3879 2.1185 0.0004 29 1 4.9568 5.1672 0.0004 30 1 7.5372 3.9341 -0.5904 31 1 6.7806 6.8358 -0.0203 32 1 8.3624 6.2722 -0.6109 33 1 6.9165 6.0963 -1.6337 34 1 7.3644 3.6827 1.8705 35 1 8.6241 4.8624 1.4357 36 1 7.0420 5.4262 2.0260 37 1 8.6973 -3.0685 0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002227578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:35 Heat of formation + Delta-G solvation = 45.097082 kcal Electronic energy + Delta-G solvation = -20347.655827 eV Core-core repulsion = 17161.660111 eV Total energy + Delta-G solvation = -3185.995716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39905 -37.62344 -37.12791 -35.66680 -32.71674 -32.43523 -31.67369 -29.74877 -29.32947 -27.04021 -25.50410 -23.43114 -22.78649 -21.88823 -20.75517 -18.82556 -18.02449 -17.01709 -15.93512 -15.47697 -15.36015 -14.94939 -14.54756 -14.40691 -14.25959 -14.05124 -13.16366 -13.00049 -12.79345 -12.70637 -12.27051 -12.17152 -12.00228 -11.74504 -11.69801 -11.60742 -11.24157 -11.04761 -10.77613 -10.47188 -10.42555 -9.99982 -9.54741 -8.52885 -8.49327 -8.22829 -8.03025 -7.82748 -6.45091 -4.06687 2.39322 2.40666 3.03378 3.16839 3.17130 3.24291 3.68078 3.91313 4.48810 4.85179 5.05487 5.12719 5.20855 5.25298 5.27140 5.33033 5.43657 5.52156 5.73662 5.74978 5.89059 5.95289 5.96656 6.07690 6.15700 6.26257 6.33262 6.56327 6.69633 7.08426 7.28817 7.38193 7.74407 7.79143 8.04120 8.21722 8.43497 9.01228 9.38389 9.88667 10.72597 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.006875 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.679325 B = 4071.693505 C = 6093.407185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.699 5.699 4 C 0.638 3.362 5 N -0.699 5.699 6 C 0.642 3.358 7 N -0.693 5.693 8 C 0.154 3.846 9 C -0.158 4.158 10 C -0.161 4.161 11 N -0.648 5.648 12 C 0.553 3.447 13 O -0.144 6.144 14 C -0.369 4.369 15 H 0.109 0.891 16 C 0.037 3.963 17 N -0.860 5.860 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.668 5.668 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.407 0.593 29 H 0.407 0.593 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.791 9.950 0.085 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.339 5.339 4 C 0.273 3.727 5 N -0.448 5.448 6 C 0.276 3.724 7 N -0.333 5.333 8 C 0.048 3.952 9 C -0.216 4.216 10 C -0.220 4.220 11 N -0.399 5.399 12 C 0.250 3.750 13 O -0.028 6.028 14 C -0.448 4.448 15 H 0.126 0.874 16 C -0.168 4.168 17 N -0.495 5.495 18 Si 0.776 3.224 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.422 5.422 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.243 0.757 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.929 9.341 0.085 12.253 hybrid contribution -0.816 -0.254 0.045 0.856 sum -8.746 9.087 0.130 12.613 Atomic orbital electron populations 1.22006 0.95148 1.02832 1.02065 1.21173 0.92806 0.82151 1.02874 1.43858 1.01280 1.08223 1.80554 1.18637 0.86501 0.83753 0.83812 1.67734 1.15481 1.22318 1.39227 1.18493 0.83456 0.86341 0.84089 1.43905 1.06964 1.01999 1.80389 1.20853 0.80081 0.97227 0.96993 1.22074 1.02411 0.96116 1.01010 1.22181 1.00478 1.02616 0.96681 1.67551 1.38458 0.97668 1.36245 1.20386 0.83179 0.86226 0.85190 1.83855 1.30036 1.13305 1.75594 1.21579 0.94584 0.76932 1.51715 0.87391 1.25431 0.95102 0.99754 0.96491 1.70084 1.01778 1.32006 1.45633 0.85489 0.79169 0.79685 0.78107 1.18762 1.20180 1.20178 1.68191 1.03278 1.34861 1.35835 0.92296 0.92295 0.90910 0.91525 0.91532 0.75727 0.75689 0.88750 0.92452 0.91038 0.92197 0.91626 0.92031 0.93275 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.03 37.15 0.37 -1.25 16 2 C 0.13 1.95 6.40 -4.04 -0.03 1.93 16 3 N -0.70 -11.41 5.69 -62.20 -0.35 -11.76 16 4 C 0.64 13.59 8.47 -322.21 -2.73 10.85 16 5 N -0.70 -14.41 10.56 -14.78 -0.16 -14.57 16 6 C 0.64 13.49 8.45 -322.22 -2.72 10.77 16 7 N -0.69 -11.12 5.21 -55.68 -0.29 -11.41 16 8 C 0.15 2.20 3.19 -67.93 -0.22 1.99 16 9 C -0.16 -1.61 9.38 37.16 0.35 -1.27 16 10 C -0.16 -2.25 9.50 37.16 0.35 -1.89 16 11 N -0.65 -15.95 9.37 -15.52 -0.15 -16.09 16 12 C 0.55 15.02 8.52 -90.44 -0.77 14.25 16 13 O -0.14 -4.39 9.75 1.21 0.01 -4.38 16 14 C -0.37 -10.79 9.69 30.90 0.30 -10.49 16 15 H 0.11 3.04 6.81 -52.49 -0.36 2.69 16 16 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 17 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 18 Si 0.95 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 N -0.67 -16.52 8.13 -15.52 -0.13 -16.65 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.41 5.53 8.59 -40.82 -0.35 5.18 16 29 H 0.41 5.48 8.72 -40.82 -0.36 5.13 16 30 H 0.09 1.62 7.54 -51.93 -0.39 1.23 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -33.71 321.91 -10.90 -44.62 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.24 Total: 8.44 kcal Atomic # 6 Polarization: 31.02 SS G_CDS: -5.19 Total: 25.83 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -0.31 Total: -95.28 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.01 Total: -4.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.71 -10.90 -44.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002227578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.713 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds