Wall clock time and date at job start Mon Mar 30 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47169 * 2 1 4 4 C 1.38013 * 119.99689 * 179.97438 * 3 2 1 5 5 N 1.32943 * 120.00342 * 179.97438 * 4 3 2 6 6 C 1.32903 * 119.96315 * 180.02562 * 5 4 3 7 7 N 1.38011 * 120.00852 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00171 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47059 * 155.00015 * 8 7 6 10 10 C 1.52998 * 109.47009 * 275.00212 * 8 7 6 11 11 N 1.32983 * 119.98395 * 359.75152 * 6 5 4 12 12 C 1.32769 * 120.01615 * 0.50767 * 11 6 5 13 13 O 1.35296 * 119.98464 * 179.76795 * 12 11 6 14 14 C 1.34904 * 118.00120 * 179.72375 * 13 12 11 15 15 H 1.07999 * 119.99981 * 359.97438 * 14 13 12 16 16 C 1.38687 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47216 * 120.00060 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00213 * 18 16 14 22 22 N 1.32797 * 120.03069 * 359.49149 * 12 11 6 23 23 H 1.09005 * 109.46916 * 299.99972 * 1 2 3 24 24 H 1.09005 * 109.47572 * 59.99675 * 1 2 3 25 25 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47174 * 240.00478 * 2 1 3 27 27 H 1.08997 * 109.47397 * 119.99704 * 2 1 3 28 28 H 0.97002 * 119.99767 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99839 * 0.02562 * 7 6 5 30 30 H 1.09002 * 109.46739 * 35.00395 * 8 7 6 31 31 H 1.08997 * 109.47359 * 60.00246 * 9 8 7 32 32 H 1.08995 * 109.46875 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47061 * 300.00411 * 9 8 7 34 34 H 1.08996 * 109.47492 * 60.00191 * 10 8 7 35 35 H 1.09009 * 109.46514 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47100 * 299.99564 * 10 8 7 37 37 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3752 1.6334 0.0005 5 7 3.8185 2.8867 0.0000 6 6 5.1253 3.1286 0.0000 7 7 5.5865 4.4293 0.0000 8 6 7.0271 4.6958 -0.0005 9 6 7.2906 6.0742 -0.6101 10 6 7.5521 4.6646 1.4362 11 7 5.9884 2.1169 0.0055 12 6 5.5449 0.8655 0.0008 13 8 6.4237 -0.1633 0.0017 14 6 5.9293 -1.4185 0.0026 15 1 4.8612 -1.5782 0.0030 16 6 6.7927 -2.5038 0.0029 17 7 8.0934 -2.3094 0.0030 18 14 6.1082 -4.2419 0.0048 19 1 4.6241 -4.1894 0.0051 20 1 6.5774 -4.9600 -1.2073 21 1 6.5789 -4.9579 1.2176 22 7 4.2393 0.6231 0.0009 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3879 2.1185 0.0004 29 1 4.9568 5.1672 0.0004 30 1 7.5372 3.9341 -0.5904 31 1 6.7806 6.8358 -0.0203 32 1 8.3624 6.2722 -0.6109 33 1 6.9165 6.0963 -1.6337 34 1 7.3644 3.6827 1.8705 35 1 8.6241 4.8624 1.4357 36 1 7.0420 5.4262 2.0260 37 1 8.6973 -3.0685 0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002227578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:35 Heat of formation + Delta-G solvation = 22.116665 kcal Electronic energy + Delta-G solvation = -20348.652333 eV Core-core repulsion = 17161.660111 eV Total energy + Delta-G solvation = -3186.992221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18984 -39.57062 -38.57113 -37.07987 -34.63006 -33.96055 -33.53919 -31.27559 -30.59938 -28.07029 -27.59869 -24.81942 -24.66389 -23.20645 -22.11725 -20.69150 -19.76799 -18.77805 -17.64182 -17.21840 -17.10713 -16.31223 -16.03628 -15.82626 -15.77546 -15.30605 -14.98960 -14.76495 -14.65482 -14.02757 -13.64953 -13.22158 -13.13485 -12.97948 -12.93764 -12.80769 -12.63332 -12.29280 -12.14522 -12.06111 -11.97522 -11.76140 -11.41525 -10.52141 -10.33192 -10.10826 -9.51651 -9.42175 -8.54109 -6.27926 0.50751 0.66980 1.33438 1.46212 1.52729 1.61003 2.03470 2.30742 2.61665 2.85995 3.33546 3.58155 3.96532 4.07039 4.20555 4.23474 4.29065 4.40945 4.59445 4.62751 4.79310 4.88551 4.97341 5.05786 5.11256 5.17251 5.24670 5.27589 5.33995 5.39990 5.57944 5.70808 5.87944 6.23987 6.31098 6.47054 6.88478 6.98462 7.45648 7.97368 8.68346 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.006875 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.679325 B = 4071.693505 C = 6093.407185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.130 3.870 3 N -0.675 5.675 4 C 0.625 3.375 5 N -0.685 5.685 6 C 0.631 3.369 7 N -0.669 5.669 8 C 0.147 3.853 9 C -0.145 4.145 10 C -0.155 4.155 11 N -0.670 5.670 12 C 0.542 3.458 13 O -0.191 6.191 14 C -0.397 4.397 15 H 0.108 0.892 16 C -0.017 4.017 17 N -0.913 5.913 18 Si 1.031 2.969 19 H -0.251 1.251 20 H -0.264 1.264 21 H -0.264 1.264 22 N -0.686 5.686 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.423 0.577 29 H 0.423 0.577 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 11.128 0.079 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 N -0.316 5.316 4 C 0.259 3.741 5 N -0.434 5.434 6 C 0.266 3.734 7 N -0.310 5.310 8 C 0.043 3.957 9 C -0.203 4.203 10 C -0.213 4.213 11 N -0.422 5.422 12 C 0.236 3.764 13 O -0.077 6.077 14 C -0.475 4.475 15 H 0.125 0.875 16 C -0.216 4.216 17 N -0.550 5.550 18 Si 0.849 3.151 19 H -0.174 1.174 20 H -0.189 1.189 21 H -0.189 1.189 22 N -0.441 5.441 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.262 0.738 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.178 10.645 0.079 14.728 hybrid contribution -0.224 -0.359 0.053 0.427 sum -10.402 10.286 0.132 14.629 Atomic orbital electron populations 1.21934 0.90861 1.04380 1.03415 1.21333 0.96148 0.80680 1.01191 1.44019 0.99452 1.09818 1.78338 1.19156 0.87944 0.83465 0.83502 1.67929 1.14964 1.21640 1.38845 1.19001 0.83449 0.87368 0.83569 1.44088 1.08296 1.00420 1.78187 1.21049 0.78496 0.98996 0.97188 1.21997 1.03941 0.93342 1.01026 1.22122 1.02174 1.00753 0.96266 1.67555 1.39762 0.97605 1.37314 1.20674 0.83972 0.86464 0.85294 1.83814 1.31916 1.14300 1.77668 1.21915 0.94931 0.77240 1.53386 0.87475 1.26807 0.95266 1.04383 0.95099 1.70209 1.03505 1.33886 1.47403 0.84378 0.79022 0.72894 0.78822 1.17390 1.18876 1.18895 1.68140 1.02817 1.36294 1.36838 0.90912 0.90898 0.89275 0.93257 0.93289 0.73783 0.73766 0.92165 0.90094 0.89288 0.91958 0.95976 0.90041 0.91010 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.03 71.98 0.72 -1.79 16 2 C 0.13 3.67 6.40 86.38 0.55 4.22 16 3 N -0.68 -21.25 5.69 -350.69 -2.00 -23.25 16 4 C 0.62 26.66 8.47 261.28 2.21 28.87 16 5 N -0.69 -27.95 10.56 -200.68 -2.12 -30.07 16 6 C 0.63 26.76 8.45 261.28 2.21 28.97 16 7 N -0.67 -20.82 5.21 -330.08 -1.72 -22.54 16 8 C 0.15 4.10 3.19 44.99 0.14 4.24 16 9 C -0.15 -2.54 9.38 71.98 0.68 -1.86 16 10 C -0.15 -4.20 9.50 71.98 0.68 -3.52 16 11 N -0.67 -34.42 9.37 -315.82 -2.96 -37.38 16 12 C 0.54 30.92 8.52 180.29 1.54 32.45 16 13 O -0.19 -12.34 9.75 -18.57 -0.18 -12.52 16 14 C -0.40 -24.35 9.69 67.93 0.66 -23.69 16 15 H 0.11 6.32 6.81 -2.91 -0.02 6.30 16 16 C -0.02 -0.96 5.49 84.85 0.47 -0.49 16 17 N -0.91 -56.57 13.67 21.62 0.30 -56.28 16 18 Si 1.03 43.57 29.55 68.60 2.03 45.60 16 19 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 N -0.69 -35.13 8.13 -315.81 -2.57 -37.69 16 23 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.42 10.49 8.59 -92.71 -0.80 9.69 16 29 H 0.42 10.39 8.72 -92.70 -0.81 9.58 16 30 H 0.06 2.12 7.54 -2.39 -0.02 2.11 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -79.22 321.91 0.14 -79.08 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.51 Total: 27.65 kcal Atomic # 6 Polarization: 57.54 SS G_CDS: 9.86 Total: 67.40 kcal Atomic # 7 Polarization: -196.14 SS G_CDS: -11.06 Total: -207.21 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.18 Total: -12.52 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -79.22 0.14 -79.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002227578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.197 kcal (2) G-P(sol) polarization free energy of solvation -79.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds