Wall clock time and date at job start Mon Mar 30 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46919 * 2 1 4 4 C 1.52997 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47300 * 55.00172 * 4 3 2 6 6 N 1.46898 * 109.47141 * 295.00015 * 4 3 2 7 7 C 1.46899 * 110.99787 * 156.64934 * 6 4 3 8 8 H 1.08999 * 109.47174 * 36.45748 * 7 6 4 9 9 C 1.50693 * 109.47275 * 276.45143 * 7 6 4 10 10 H 1.08008 * 119.99954 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00326 * 179.72947 * 9 7 6 12 12 N 1.31516 * 119.99945 * 180.02562 * 11 9 7 13 13 Si 1.86796 * 120.00021 * 359.97438 * 11 9 7 14 14 H 1.48503 * 109.47103 * 90.00243 * 13 11 9 15 15 H 1.48493 * 109.47544 * 210.00436 * 13 11 9 16 16 H 1.48505 * 109.47072 * 330.00685 * 13 11 9 17 17 C 1.53010 * 109.46988 * 156.45413 * 7 6 4 18 18 C 1.52997 * 109.46953 * 294.27803 * 17 7 6 19 19 C 1.50700 * 109.47062 * 174.99823 * 4 3 2 20 20 C 1.33395 * 125.20518 * 254.32395 * 19 4 3 21 21 C 1.38428 * 114.91943 * 179.97438 * 20 19 4 22 22 C 1.33391 * 114.92232 * 359.97438 * 21 20 19 23 23 S 1.75886 * 125.20176 * 74.01551 * 19 4 3 24 24 H 1.08994 * 109.47053 * 299.99889 * 1 2 3 25 25 H 1.08996 * 109.47405 * 60.00748 * 1 2 3 26 26 H 1.09007 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46774 * 240.00032 * 2 1 3 28 28 H 1.08999 * 109.46705 * 119.99854 * 2 1 3 29 29 H 1.08999 * 109.46950 * 59.99770 * 3 2 1 30 30 H 1.09001 * 109.47153 * 299.99997 * 3 2 1 31 31 H 1.00901 * 110.99577 * 280.60071 * 6 4 3 32 32 H 0.96999 * 119.99672 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47216 * 54.27789 * 17 7 6 34 34 H 1.09001 * 109.46660 * 174.28117 * 17 7 6 35 35 H 1.09002 * 109.47073 * 184.72978 * 18 17 7 36 36 H 1.09003 * 109.47434 * 304.73500 * 18 17 7 37 37 H 1.09004 * 109.47298 * 64.73208 * 18 17 7 38 38 H 1.07997 * 122.53556 * 359.97438 * 20 19 4 39 39 H 1.08001 * 122.53464 * 179.97438 * 21 20 19 40 40 H 1.08001 * 125.19958 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0591 0.8574 1.2561 7 6 5.4217 0.3323 1.0965 8 1 5.9864 0.9840 0.4297 9 6 5.3602 -1.0546 0.5103 10 1 4.4044 -1.5012 0.2791 11 6 6.5243 -1.7510 0.2635 12 7 6.4706 -2.9612 -0.2485 13 14 8.1778 -0.9751 0.6550 14 1 8.5650 -1.3118 2.0486 15 1 9.2038 -1.4961 -0.2834 16 1 8.0789 0.4997 0.5114 17 6 6.1109 0.2790 2.4615 18 6 6.3015 1.7011 2.9925 19 6 4.0723 2.8579 -0.1232 20 6 4.6068 3.3907 -1.2232 21 6 4.9972 4.7131 -1.1002 22 6 4.7794 5.2543 0.0994 23 16 4.0366 4.0622 1.1581 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.0159 1.5282 2.0086 32 1 7.2895 -3.4510 -0.4225 33 1 5.4943 -0.2893 3.1579 34 1 7.0828 -0.2040 2.3592 35 1 6.8666 1.6685 3.9240 36 1 6.8465 2.2935 2.2575 37 1 5.3272 2.1547 3.1744 38 1 4.7258 2.8327 -2.1401 39 1 5.4444 5.2648 -1.9139 40 1 5.0195 6.2700 0.3770 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:41 Heat of formation + Delta-G solvation = 19.318153 kcal Electronic energy + Delta-G solvation = -19022.965819 eV Core-core repulsion = 16349.852709 eV Total energy + Delta-G solvation = -2673.113111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.33014 -36.63792 -34.72542 -32.31607 -31.71907 -29.25212 -27.61498 -26.51511 -24.01158 -22.61773 -21.70927 -20.34430 -19.93766 -18.92982 -17.05612 -16.59709 -15.43987 -15.23445 -14.49080 -14.39911 -13.96016 -13.37850 -13.14107 -13.02944 -12.71122 -12.54154 -12.38028 -12.13799 -12.03510 -11.84268 -11.61462 -11.09002 -11.07448 -10.73707 -10.63794 -10.53419 -10.30794 -10.17049 -10.05699 -9.97347 -9.41376 -9.19887 -8.51443 -8.39300 -8.26257 -7.48092 -6.03113 -3.99681 1.22555 1.83354 2.21248 2.97422 3.26747 3.38702 3.39609 4.42250 4.95764 4.99812 5.18422 5.26180 5.50875 5.54983 5.60466 5.73136 5.78091 5.79109 5.85907 5.90827 6.00021 6.08473 6.17396 6.28194 6.30242 6.41185 6.50038 6.52476 6.55987 6.64892 6.68412 6.73444 6.77759 6.88125 7.03365 7.20363 7.72579 7.93463 8.20743 8.74600 9.09168 9.60532 11.10012 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.008552 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.286446 B = 3273.333368 C = 4346.896399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.096 4.096 4 C 0.156 3.844 5 H 0.105 0.895 6 N -0.658 5.658 7 C 0.189 3.811 8 H 0.003 0.997 9 C -0.494 4.494 10 H 0.083 0.917 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.878 3.122 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.267 1.267 17 C -0.135 4.135 18 C -0.156 4.156 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.128 4.128 22 C -0.230 4.230 23 S 0.085 5.915 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.318 0.682 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 13.982 1.194 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.135 4.135 4 C 0.043 3.957 5 H 0.123 0.877 6 N -0.288 5.288 7 C 0.081 3.919 8 H 0.021 0.979 9 C -0.533 4.533 10 H 0.101 0.899 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.709 3.291 14 H -0.206 1.206 15 H -0.226 1.226 16 H -0.192 1.192 17 C -0.173 4.173 18 C -0.214 4.214 19 C -0.294 4.294 20 C -0.180 4.180 21 C -0.159 4.159 22 C -0.365 4.365 23 S 0.347 5.653 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.669 13.218 2.533 15.020 hybrid contribution 2.240 1.290 -1.305 2.896 sum -4.429 14.508 1.228 15.219 Atomic orbital electron populations 1.21791 0.97181 1.00993 1.00729 1.21403 0.93789 0.96305 1.03858 1.21557 0.93565 0.97600 1.00760 1.20383 0.94464 0.84803 0.96093 0.87683 1.60742 1.26753 1.37674 1.03630 1.19655 0.84102 0.96281 0.91910 0.97927 1.21027 0.94840 0.97668 1.39749 0.89858 1.24927 0.98577 0.94717 0.95075 1.69883 1.27953 1.11308 1.44783 0.87004 0.84633 0.80165 0.77345 1.20633 1.22565 1.19247 1.22103 1.00640 0.94819 0.99724 1.21932 1.00675 0.98672 1.00088 1.26013 1.05516 1.01449 0.96390 1.20183 1.02887 0.95284 0.99672 1.20162 1.02727 0.95365 0.97620 1.25488 1.09869 1.03310 0.97834 1.84068 1.61001 1.03358 1.16868 0.93371 0.93638 0.93139 0.92117 0.89896 0.92638 0.92611 0.86290 0.92789 0.91366 0.92825 0.93684 0.93604 0.93085 0.84358 0.84809 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.84 5.82 -26.73 -0.16 -1.99 16 3 C -0.10 -1.47 4.87 -26.74 -0.13 -1.60 16 4 C 0.16 2.76 2.25 -68.87 -0.16 2.60 16 5 H 0.11 2.12 7.56 -51.93 -0.39 1.73 16 6 N -0.66 -12.89 5.48 -102.17 -0.56 -13.45 16 7 C 0.19 4.33 1.44 -68.86 -0.10 4.23 16 8 H 0.00 0.08 6.62 -51.93 -0.34 -0.27 16 9 C -0.49 -13.51 8.99 -34.44 -0.31 -13.82 16 10 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 11 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 12 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 13 Si 0.88 21.97 24.43 -169.99 -4.15 17.81 16 14 H -0.28 -6.83 6.82 56.52 0.39 -6.45 16 15 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 17 C -0.13 -2.90 5.03 -26.73 -0.13 -3.04 16 18 C -0.16 -2.77 9.66 37.16 0.36 -2.41 16 19 C -0.17 -2.83 4.96 -36.00 -0.18 -3.01 16 20 C -0.15 -2.32 10.03 -41.20 -0.41 -2.73 16 21 C -0.13 -1.72 10.18 -41.21 -0.42 -2.14 16 22 C -0.23 -2.97 11.23 29.04 0.33 -2.65 16 23 S 0.08 1.20 22.25 -107.50 -2.39 -1.19 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.32 5.74 5.39 -39.29 -0.21 5.53 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.05 1.24 3.26 -51.93 -0.17 1.07 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.82 6.62 -51.93 -0.34 0.47 16 38 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -29.12 327.40 -8.98 -38.10 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.54 Total: 6.62 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -1.04 Total: -26.30 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.21 Total: -39.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.15 Total: 17.81 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.39 Total: -1.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.12 -8.98 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.422 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds