Wall clock time and date at job start Mon Mar 30 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46919 * 2 1 4 4 C 1.52997 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47300 * 55.00172 * 4 3 2 6 6 N 1.46898 * 109.47141 * 295.00015 * 4 3 2 7 7 C 1.46899 * 110.99787 * 156.64934 * 6 4 3 8 8 H 1.08999 * 109.47174 * 36.45748 * 7 6 4 9 9 C 1.50693 * 109.47275 * 276.45143 * 7 6 4 10 10 H 1.08008 * 119.99954 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00326 * 179.72947 * 9 7 6 12 12 N 1.31516 * 119.99945 * 180.02562 * 11 9 7 13 13 Si 1.86796 * 120.00021 * 359.97438 * 11 9 7 14 14 H 1.48503 * 109.47103 * 90.00243 * 13 11 9 15 15 H 1.48493 * 109.47544 * 210.00436 * 13 11 9 16 16 H 1.48505 * 109.47072 * 330.00685 * 13 11 9 17 17 C 1.53010 * 109.46988 * 156.45413 * 7 6 4 18 18 C 1.52997 * 109.46953 * 294.27803 * 17 7 6 19 19 C 1.50700 * 109.47062 * 174.99823 * 4 3 2 20 20 C 1.33395 * 125.20518 * 254.32395 * 19 4 3 21 21 C 1.38428 * 114.91943 * 179.97438 * 20 19 4 22 22 C 1.33391 * 114.92232 * 359.97438 * 21 20 19 23 23 S 1.75886 * 125.20176 * 74.01551 * 19 4 3 24 24 H 1.08994 * 109.47053 * 299.99889 * 1 2 3 25 25 H 1.08996 * 109.47405 * 60.00748 * 1 2 3 26 26 H 1.09007 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46774 * 240.00032 * 2 1 3 28 28 H 1.08999 * 109.46705 * 119.99854 * 2 1 3 29 29 H 1.08999 * 109.46950 * 59.99770 * 3 2 1 30 30 H 1.09001 * 109.47153 * 299.99997 * 3 2 1 31 31 H 1.00901 * 110.99577 * 280.60071 * 6 4 3 32 32 H 0.96999 * 119.99672 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47216 * 54.27789 * 17 7 6 34 34 H 1.09001 * 109.46660 * 174.28117 * 17 7 6 35 35 H 1.09002 * 109.47073 * 184.72978 * 18 17 7 36 36 H 1.09003 * 109.47434 * 304.73500 * 18 17 7 37 37 H 1.09004 * 109.47298 * 64.73208 * 18 17 7 38 38 H 1.07997 * 122.53556 * 359.97438 * 20 19 4 39 39 H 1.08001 * 122.53464 * 179.97438 * 21 20 19 40 40 H 1.08001 * 125.19958 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0591 0.8574 1.2561 7 6 5.4217 0.3323 1.0965 8 1 5.9864 0.9840 0.4297 9 6 5.3602 -1.0546 0.5103 10 1 4.4044 -1.5012 0.2791 11 6 6.5243 -1.7510 0.2635 12 7 6.4706 -2.9612 -0.2485 13 14 8.1778 -0.9751 0.6550 14 1 8.5650 -1.3118 2.0486 15 1 9.2038 -1.4961 -0.2834 16 1 8.0789 0.4997 0.5114 17 6 6.1109 0.2790 2.4615 18 6 6.3015 1.7011 2.9925 19 6 4.0723 2.8579 -0.1232 20 6 4.6068 3.3907 -1.2232 21 6 4.9972 4.7131 -1.1002 22 6 4.7794 5.2543 0.0994 23 16 4.0366 4.0622 1.1581 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.0159 1.5282 2.0086 32 1 7.2895 -3.4510 -0.4225 33 1 5.4943 -0.2893 3.1579 34 1 7.0828 -0.2040 2.3592 35 1 6.8666 1.6685 3.9240 36 1 6.8465 2.2935 2.2575 37 1 5.3272 2.1547 3.1744 38 1 4.7258 2.8327 -2.1401 39 1 5.4444 5.2648 -1.9139 40 1 5.0195 6.2700 0.3770 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:41 Heat of formation + Delta-G solvation = 2.169427 kcal Electronic energy + Delta-G solvation = -19023.709444 eV Core-core repulsion = 16349.852709 eV Total energy + Delta-G solvation = -2673.856735 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69586 -38.00585 -36.20709 -34.26106 -33.25335 -30.64488 -29.08160 -28.13554 -25.19769 -24.36327 -22.97429 -21.85374 -21.57411 -20.10050 -18.84365 -18.13709 -16.96609 -16.61061 -16.12630 -15.84773 -15.56518 -14.91375 -14.64547 -14.34125 -14.22863 -13.79136 -13.71570 -13.60621 -13.49657 -13.12356 -12.97564 -12.73951 -12.45153 -12.34116 -12.22500 -12.05206 -11.76563 -11.62984 -11.54480 -11.40155 -11.25170 -11.18353 -10.67143 -9.55613 -9.37373 -9.09960 -8.25798 -6.25802 0.10862 0.71938 1.10988 1.26203 1.32241 1.41256 1.86256 2.31150 3.07262 3.46540 3.70907 4.21131 4.24367 4.25751 4.29705 4.33162 4.41790 4.42703 4.60311 4.66472 4.71742 4.81229 4.89239 4.93476 5.02281 5.06300 5.08240 5.15932 5.17741 5.23847 5.34510 5.40312 5.45337 5.50240 5.58316 5.67817 5.73184 6.09160 6.46643 6.81052 6.89870 7.38180 8.91127 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.008552 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.286446 B = 3273.333368 C = 4346.896399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.086 4.086 4 C 0.159 3.841 5 H 0.066 0.934 6 N -0.662 5.662 7 C 0.200 3.800 8 H -0.011 1.011 9 C -0.491 4.491 10 H 0.041 0.959 11 C 0.012 3.988 12 N -0.949 5.949 13 Si 0.940 3.060 14 H -0.266 1.266 15 H -0.301 1.301 16 H -0.255 1.255 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.207 4.207 20 C -0.155 4.155 21 C -0.140 4.140 22 C -0.215 4.215 23 S 0.099 5.901 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.331 0.669 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.160 0.840 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 17.392 2.433 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.125 4.125 4 C 0.047 3.953 5 H 0.084 0.916 6 N -0.293 5.293 7 C 0.091 3.909 8 H 0.007 0.993 9 C -0.530 4.530 10 H 0.059 0.941 11 C -0.185 4.185 12 N -0.590 5.590 13 Si 0.768 3.232 14 H -0.192 1.192 15 H -0.229 1.229 16 H -0.179 1.179 17 C -0.175 4.175 18 C -0.204 4.204 19 C -0.326 4.326 20 C -0.186 4.186 21 C -0.170 4.170 22 C -0.350 4.350 23 S 0.362 5.638 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.151 0.849 39 H 0.177 0.823 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.473 16.654 3.787 18.265 hybrid contribution 2.071 0.243 -1.742 2.717 sum -4.402 16.897 2.046 17.580 Atomic orbital electron populations 1.21723 0.94460 1.01633 1.02114 1.21331 0.96172 0.96379 1.01278 1.21488 0.91828 0.97146 1.02002 1.20179 0.95827 0.85632 0.93672 0.91586 1.60593 1.24711 1.38866 1.05099 1.19344 0.85926 0.93255 0.92386 0.99326 1.21279 0.93048 0.99638 1.39032 0.94087 1.25698 1.02460 0.95103 0.95234 1.70037 1.28936 1.13121 1.46943 0.85985 0.79860 0.79814 0.77548 1.19216 1.22886 1.17899 1.22015 0.99376 0.97557 0.98515 1.21846 1.02087 0.95578 1.00937 1.25750 1.07477 1.01191 0.98139 1.20414 1.02350 0.96491 0.99380 1.20365 1.03185 0.94521 0.98901 1.25935 1.07880 1.04251 0.96962 1.83933 1.61073 1.02779 1.16062 0.92012 0.92121 0.92969 0.94525 0.92727 0.91321 0.91115 0.84921 0.92816 0.91639 0.94316 0.91118 0.93832 0.91466 0.84894 0.82289 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.74 5.82 30.59 0.18 -3.57 16 3 C -0.09 -2.63 4.87 30.59 0.15 -2.48 16 4 C 0.16 5.76 2.25 44.17 0.10 5.86 16 5 H 0.07 2.86 7.56 -2.39 -0.02 2.85 16 6 N -0.66 -26.18 5.48 -477.16 -2.62 -28.80 16 7 C 0.20 9.28 1.44 44.17 0.06 9.34 16 8 H -0.01 -0.53 6.62 -2.39 -0.02 -0.55 16 9 C -0.49 -28.10 8.99 25.60 0.23 -27.87 16 10 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 11 C 0.01 0.68 5.45 84.65 0.46 1.14 16 12 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 13 Si 0.94 45.95 24.43 68.60 1.68 47.62 16 14 H -0.27 -12.36 6.82 99.48 0.68 -11.68 16 15 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 16 H -0.25 -11.80 6.53 99.48 0.65 -11.15 16 17 C -0.14 -5.71 5.03 30.60 0.15 -5.56 16 18 C -0.15 -4.75 9.66 71.98 0.70 -4.06 16 19 C -0.21 -6.51 4.96 24.59 0.12 -6.39 16 20 C -0.16 -4.63 10.03 21.22 0.21 -4.42 16 21 C -0.14 -3.35 10.18 21.22 0.22 -3.13 16 22 C -0.21 -4.71 11.23 66.72 0.75 -3.96 16 23 S 0.10 2.52 22.25 -56.49 -1.26 1.27 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 2.08 7.75 -2.39 -0.02 2.06 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.33 11.56 5.39 -89.69 -0.48 11.08 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.04 1.73 3.26 -2.39 -0.01 1.72 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.93 6.62 -2.38 -0.02 1.92 16 38 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -65.59 327.40 2.58 -63.01 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.44 Total: 24.62 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 4.04 Total: -47.96 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.32 Total: -88.56 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.68 Total: 47.62 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.26 Total: 1.27 kcal Total: -65.59 2.58 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.175 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds