Wall clock time and date at job start Mon Mar 30 2020 00:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.52999 * 109.46653 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00137 * 4 3 2 6 6 N 1.46894 * 109.47385 * 65.00182 * 4 3 2 7 7 C 1.46900 * 111.00134 * 209.32981 * 6 4 3 8 8 H 1.08998 * 109.46987 * 33.32924 * 7 6 4 9 9 C 1.50699 * 109.47223 * 273.32647 * 7 6 4 10 10 H 1.07995 * 120.00167 * 0.02562 * 9 7 6 11 11 C 1.37878 * 120.00095 * 179.97438 * 9 7 6 12 12 N 1.31518 * 119.99845 * 0.02562 * 11 9 7 13 13 Si 1.86794 * 120.00113 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47070 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47085 * 119.99917 * 13 11 9 16 16 H 1.48506 * 109.47406 * 240.00151 * 13 11 9 17 17 C 1.52999 * 109.47209 * 153.32342 * 7 6 4 18 18 C 1.52996 * 109.47511 * 296.00653 * 17 7 6 19 19 C 1.50703 * 109.47194 * 185.00250 * 4 3 2 20 20 C 1.33381 * 125.20395 * 99.99445 * 19 4 3 21 21 C 1.38420 * 114.92141 * 180.02562 * 20 19 4 22 22 C 1.33389 * 114.92096 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.19943 * 280.02512 * 19 4 3 24 24 H 1.08997 * 109.47066 * 59.99823 * 1 2 3 25 25 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46883 * 300.00227 * 1 2 3 27 27 H 1.09002 * 109.46482 * 240.00422 * 2 1 3 28 28 H 1.08997 * 109.47066 * 120.00177 * 2 1 3 29 29 H 1.08996 * 109.46864 * 60.00614 * 3 2 1 30 30 H 1.08997 * 109.47399 * 299.99973 * 3 2 1 31 31 H 1.00900 * 111.00395 * 85.37395 * 6 4 3 32 32 H 0.97002 * 119.99442 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.47108 * 56.00877 * 17 7 6 34 34 H 1.09008 * 109.47451 * 176.00405 * 17 7 6 35 35 H 1.08996 * 109.47293 * 55.44819 * 18 17 7 36 36 H 1.09002 * 109.47376 * 175.45046 * 18 17 7 37 37 H 1.09005 * 109.47051 * 295.44379 * 18 17 7 38 38 H 1.08002 * 122.54231 * 0.02562 * 20 19 4 39 39 H 1.08007 * 122.54533 * 179.97438 * 21 20 19 40 40 H 1.08006 * 125.20457 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 7 4.0592 0.8574 -1.2561 7 6 5.3619 0.2072 -1.0615 8 1 5.4095 -0.2183 -0.0591 9 6 6.4611 1.2246 -1.2280 10 1 6.2164 2.2516 -1.4552 11 6 7.7792 0.8445 -1.0892 12 7 8.0772 -0.4061 -0.8120 13 14 9.1416 2.1055 -1.2963 14 1 8.5468 3.4309 -1.6041 15 1 9.9282 2.1952 -0.0399 16 1 10.0330 1.6929 -2.4101 17 6 5.5361 -0.9059 -2.0967 18 6 4.4804 -1.9885 -1.8642 19 6 4.0725 2.8579 0.1232 20 6 4.5076 3.4235 1.2501 21 6 4.9207 4.7383 1.1211 22 6 4.8205 5.2406 -0.1106 23 16 4.1740 4.0167 -1.1959 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.1078 1.5536 -1.9848 32 1 9.0045 -0.6733 -0.7140 33 1 5.4180 -0.4923 -3.0983 34 1 6.5307 -1.3412 -1.9984 35 1 3.4880 -1.5382 -1.8823 36 1 4.5524 -2.7409 -2.6496 37 1 4.6488 -2.4580 -0.8949 38 1 4.5356 2.8956 2.1919 39 1 5.2950 5.3142 1.9546 40 1 5.0952 6.2449 -0.3977 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:44 Heat of formation + Delta-G solvation = 10.118339 kcal Electronic energy + Delta-G solvation = -19042.974036 eV Core-core repulsion = 16369.461992 eV Total energy + Delta-G solvation = -2673.512045 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.06432 -36.30442 -34.51726 -32.31093 -31.32524 -29.00279 -27.46988 -25.74460 -23.85935 -22.65566 -21.66595 -20.39095 -19.55752 -18.66469 -16.95014 -16.23622 -15.17768 -14.94628 -14.59928 -14.13667 -13.65173 -13.26358 -12.87606 -12.71168 -12.51458 -12.44823 -12.18741 -11.79228 -11.57796 -11.32276 -11.13971 -11.08737 -10.87074 -10.79077 -10.66658 -10.57531 -10.31971 -10.11687 -10.06602 -9.56808 -9.41705 -9.04764 -8.34104 -8.07583 -7.87636 -7.34216 -5.95741 -4.05428 1.55225 2.15574 2.52897 3.27656 3.28724 3.37039 3.42029 4.44625 5.07007 5.18392 5.34063 5.43492 5.44407 5.55678 5.60353 5.84892 5.95637 6.01810 6.07203 6.17642 6.22612 6.30962 6.40387 6.45534 6.52288 6.57605 6.66822 6.71102 6.81444 6.87487 6.98193 7.13295 7.20805 7.44868 7.60291 7.83641 8.07561 8.16083 8.32183 8.62565 9.05383 9.61810 11.05587 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.009577 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.863065 B = 2922.827739 C = 4514.241928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.100 4.100 4 C 0.159 3.841 5 H 0.086 0.914 6 N -0.675 5.675 7 C 0.215 3.785 8 H 0.032 0.968 9 C -0.538 4.538 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.881 3.119 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.235 4.235 23 S 0.098 5.902 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.328 0.672 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.035 0.965 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 5.203 2.033 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.138 4.138 4 C 0.046 3.954 5 H 0.104 0.896 6 N -0.304 5.304 7 C 0.108 3.892 8 H 0.050 0.950 9 C -0.577 4.577 10 H 0.082 0.918 11 C -0.134 4.134 12 N -0.527 5.527 13 Si 0.709 3.291 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.145 4.145 18 C -0.197 4.197 19 C -0.270 4.270 20 C -0.185 4.185 21 C -0.159 4.159 22 C -0.371 4.371 23 S 0.361 5.639 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.979 4.449 0.587 11.861 hybrid contribution 2.155 1.651 1.568 3.135 sum -8.824 6.100 2.155 10.942 Atomic orbital electron populations 1.21788 0.97015 1.00887 1.01055 1.21432 0.94108 0.96875 1.02994 1.21611 0.94232 0.97009 1.00981 1.20240 0.93617 0.85983 0.95530 0.89580 1.61072 1.31760 1.32727 1.04796 1.19242 0.82884 0.91833 0.95289 0.94999 1.22047 0.91726 0.95863 1.48104 0.91797 1.24879 0.98591 0.94902 0.94992 1.69890 1.18218 1.15686 1.48863 0.86707 0.82532 0.82250 0.77624 1.19774 1.21218 1.21098 1.21503 0.99576 0.95582 0.97827 1.21745 1.00647 0.98392 0.98872 1.25581 1.05041 1.00917 0.95509 1.19967 1.04238 0.95146 0.99122 1.20055 1.02889 0.95747 0.97160 1.25420 1.11321 1.03200 0.97145 1.83975 1.62933 1.03530 1.13447 0.93132 0.93286 0.93510 0.90146 0.92744 0.92718 0.92319 0.85402 0.93146 0.95169 0.89139 0.92966 0.95751 0.94609 0.85045 0.85283 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.63 5.82 -26.73 -0.16 -1.78 16 3 C -0.10 -1.48 4.87 -26.73 -0.13 -1.61 16 4 C 0.16 2.84 2.44 -68.87 -0.17 2.68 16 5 H 0.09 1.66 7.31 -51.93 -0.38 1.28 16 6 N -0.67 -13.39 4.84 -102.17 -0.49 -13.89 16 7 C 0.22 5.11 1.99 -68.87 -0.14 4.97 16 8 H 0.03 0.85 7.35 -51.93 -0.38 0.47 16 9 C -0.54 -14.09 7.90 -34.44 -0.27 -14.36 16 10 H 0.06 1.66 6.04 -52.49 -0.32 1.35 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 12 N -0.89 -24.94 11.30 55.43 0.63 -24.32 16 13 Si 0.88 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C -0.11 -2.49 5.44 -26.73 -0.15 -2.63 16 18 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 19 C -0.15 -2.72 4.34 -36.00 -0.16 -2.88 16 20 C -0.15 -2.70 10.04 -41.21 -0.41 -3.11 16 21 C -0.13 -2.05 10.18 -41.21 -0.42 -2.47 16 22 C -0.24 -3.76 11.23 29.04 0.33 -3.43 16 23 S 0.10 1.68 20.81 -107.50 -2.24 -0.56 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.25 6.77 -51.93 -0.35 0.90 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.33 6.68 6.84 -39.29 -0.27 6.41 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 2.39 5.98 -51.92 -0.31 2.08 16 35 H 0.05 0.98 6.61 -51.93 -0.34 0.64 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -27.16 329.78 -9.75 -36.91 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.56 Total: 7.05 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -1.03 Total: -26.65 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.13 Total: -38.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.24 Total: -0.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.16 -9.75 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.026 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds