Wall clock time and date at job start Mon Mar 30 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.52999 * 109.46653 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00137 * 4 3 2 6 6 N 1.46894 * 109.47385 * 65.00182 * 4 3 2 7 7 C 1.46900 * 111.00134 * 209.32981 * 6 4 3 8 8 H 1.08998 * 109.46987 * 33.32924 * 7 6 4 9 9 C 1.50699 * 109.47223 * 273.32647 * 7 6 4 10 10 H 1.07995 * 120.00167 * 0.02562 * 9 7 6 11 11 C 1.37878 * 120.00095 * 179.97438 * 9 7 6 12 12 N 1.31518 * 119.99845 * 0.02562 * 11 9 7 13 13 Si 1.86794 * 120.00113 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47070 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47085 * 119.99917 * 13 11 9 16 16 H 1.48506 * 109.47406 * 240.00151 * 13 11 9 17 17 C 1.52999 * 109.47209 * 153.32342 * 7 6 4 18 18 C 1.52996 * 109.47511 * 296.00653 * 17 7 6 19 19 C 1.50703 * 109.47194 * 185.00250 * 4 3 2 20 20 C 1.33381 * 125.20395 * 99.99445 * 19 4 3 21 21 C 1.38420 * 114.92141 * 180.02562 * 20 19 4 22 22 C 1.33389 * 114.92096 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.19943 * 280.02512 * 19 4 3 24 24 H 1.08997 * 109.47066 * 59.99823 * 1 2 3 25 25 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46883 * 300.00227 * 1 2 3 27 27 H 1.09002 * 109.46482 * 240.00422 * 2 1 3 28 28 H 1.08997 * 109.47066 * 120.00177 * 2 1 3 29 29 H 1.08996 * 109.46864 * 60.00614 * 3 2 1 30 30 H 1.08997 * 109.47399 * 299.99973 * 3 2 1 31 31 H 1.00900 * 111.00395 * 85.37395 * 6 4 3 32 32 H 0.97002 * 119.99442 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.47108 * 56.00877 * 17 7 6 34 34 H 1.09008 * 109.47451 * 176.00405 * 17 7 6 35 35 H 1.08996 * 109.47293 * 55.44819 * 18 17 7 36 36 H 1.09002 * 109.47376 * 175.45046 * 18 17 7 37 37 H 1.09005 * 109.47051 * 295.44379 * 18 17 7 38 38 H 1.08002 * 122.54231 * 0.02562 * 20 19 4 39 39 H 1.08007 * 122.54533 * 179.97438 * 21 20 19 40 40 H 1.08006 * 125.20457 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 7 4.0592 0.8574 -1.2561 7 6 5.3619 0.2072 -1.0615 8 1 5.4095 -0.2183 -0.0591 9 6 6.4611 1.2246 -1.2280 10 1 6.2164 2.2516 -1.4552 11 6 7.7792 0.8445 -1.0892 12 7 8.0772 -0.4061 -0.8120 13 14 9.1416 2.1055 -1.2963 14 1 8.5468 3.4309 -1.6041 15 1 9.9282 2.1952 -0.0399 16 1 10.0330 1.6929 -2.4101 17 6 5.5361 -0.9059 -2.0967 18 6 4.4804 -1.9885 -1.8642 19 6 4.0725 2.8579 0.1232 20 6 4.5076 3.4235 1.2501 21 6 4.9207 4.7383 1.1211 22 6 4.8205 5.2406 -0.1106 23 16 4.1740 4.0167 -1.1959 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 4.1078 1.5536 -1.9848 32 1 9.0045 -0.6733 -0.7140 33 1 5.4180 -0.4923 -3.0983 34 1 6.5307 -1.3412 -1.9984 35 1 3.4880 -1.5382 -1.8823 36 1 4.5524 -2.7409 -2.6496 37 1 4.6488 -2.4580 -0.8949 38 1 4.5356 2.8956 2.1919 39 1 5.2950 5.3142 1.9546 40 1 5.0952 6.2449 -0.3977 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:43 Heat of formation + Delta-G solvation = -3.050245 kcal Electronic energy + Delta-G solvation = -19043.545069 eV Core-core repulsion = 16369.461992 eV Total energy + Delta-G solvation = -2674.083077 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49840 -37.77903 -36.03892 -33.95842 -33.04341 -30.52010 -28.83510 -27.49282 -25.20729 -24.44095 -22.90761 -21.81525 -21.23160 -20.06906 -18.63753 -17.89468 -16.85023 -16.34776 -16.12761 -15.51028 -15.31966 -14.87172 -14.29199 -14.17473 -13.90877 -13.72259 -13.47145 -13.31551 -13.16093 -13.02327 -12.87481 -12.60716 -12.54138 -12.33844 -12.09613 -12.03626 -11.77406 -11.59190 -11.43692 -11.35554 -11.11813 -10.91394 -10.41285 -9.42707 -9.27421 -9.01091 -8.01131 -6.17531 0.23610 0.83841 1.21306 1.33302 1.37667 1.46523 1.97140 2.42047 3.20811 3.68994 3.79313 4.26336 4.29163 4.39475 4.46887 4.56879 4.66725 4.73607 4.77084 4.81650 4.92794 4.94986 5.01061 5.09380 5.17199 5.25658 5.28310 5.37633 5.45877 5.49189 5.53679 5.60208 5.66215 5.71327 5.72865 5.85692 6.17301 6.23648 6.43044 6.81863 7.05948 7.52229 8.96968 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.009577 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.863065 B = 2922.827739 C = 4514.241928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.089 4.089 4 C 0.161 3.839 5 H 0.065 0.935 6 N -0.663 5.663 7 C 0.226 3.774 8 H 0.000 1.000 9 C -0.541 4.541 10 H 0.064 0.936 11 C 0.022 3.978 12 N -0.913 5.913 13 Si 0.932 3.068 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.283 1.283 17 C -0.103 4.103 18 C -0.127 4.127 19 C -0.174 4.174 20 C -0.164 4.164 21 C -0.136 4.136 22 C -0.231 4.231 23 S 0.084 5.916 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.327 0.673 32 H 0.257 0.743 33 H 0.025 0.975 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 6.485 2.070 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.127 4.127 4 C 0.048 3.952 5 H 0.084 0.916 6 N -0.292 5.292 7 C 0.117 3.883 8 H 0.018 0.982 9 C -0.581 4.581 10 H 0.083 0.917 11 C -0.177 4.177 12 N -0.554 5.554 13 Si 0.760 3.240 14 H -0.195 1.195 15 H -0.213 1.213 16 H -0.209 1.209 17 C -0.142 4.142 18 C -0.184 4.184 19 C -0.293 4.293 20 C -0.194 4.194 21 C -0.167 4.167 22 C -0.367 4.367 23 S 0.347 5.653 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.970 5.740 0.624 13.289 hybrid contribution 2.447 1.294 1.592 3.193 sum -9.523 7.034 2.217 12.045 Atomic orbital electron populations 1.21730 0.94837 1.01782 1.01803 1.21392 0.95991 0.95928 1.01892 1.21527 0.91710 0.97807 1.01675 1.20247 0.95524 0.85815 0.93599 0.91648 1.61008 1.29304 1.32997 1.05854 1.18962 0.84142 0.91690 0.93482 0.98241 1.22375 0.92406 0.96352 1.46927 0.91744 1.25515 1.00593 0.96251 0.95352 1.70012 1.18355 1.16975 1.50026 0.85895 0.80334 0.80449 0.77365 1.19511 1.21313 1.20865 1.21364 0.99057 0.96403 0.97354 1.21600 0.99944 0.97691 0.99149 1.25612 1.06299 1.01139 0.96279 1.20271 1.03804 0.96071 0.99293 1.20345 1.02777 0.95367 0.98225 1.25815 1.10271 1.03980 0.96602 1.83967 1.63452 1.04086 1.13814 0.92655 0.92378 0.92471 0.91809 0.93299 0.91422 0.92051 0.85503 0.93339 0.95573 0.92238 0.91747 0.93934 0.95201 0.84470 0.82615 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.11 -3.07 5.82 30.60 0.18 -2.90 16 3 C -0.09 -2.53 4.87 30.60 0.15 -2.38 16 4 C 0.16 5.73 2.44 44.17 0.11 5.84 16 5 H 0.07 2.59 7.31 -2.39 -0.02 2.57 16 6 N -0.66 -26.39 4.84 -477.17 -2.31 -28.70 16 7 C 0.23 10.91 1.99 44.17 0.09 11.00 16 8 H 0.00 -0.02 7.35 -2.39 -0.02 -0.04 16 9 C -0.54 -28.55 7.90 25.60 0.20 -28.34 16 10 H 0.06 3.34 6.04 -2.91 -0.02 3.33 16 11 C 0.02 1.21 5.30 84.65 0.45 1.65 16 12 N -0.91 -52.31 11.30 21.45 0.24 -52.07 16 13 Si 0.93 44.18 29.54 68.60 2.03 46.21 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 C -0.10 -4.88 5.44 30.59 0.17 -4.72 16 18 C -0.13 -5.00 9.85 71.98 0.71 -4.29 16 19 C -0.17 -6.17 4.34 24.59 0.11 -6.06 16 20 C -0.16 -5.54 10.04 21.21 0.21 -5.33 16 21 C -0.14 -4.09 10.18 21.22 0.22 -3.88 16 22 C -0.23 -6.82 11.23 66.72 0.75 -6.07 16 23 S 0.08 2.77 20.81 -56.49 -1.18 1.60 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.93 6.77 -2.39 -0.02 1.91 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.33 13.26 6.84 -89.69 -0.61 12.65 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 33 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.06 3.21 5.98 -2.38 -0.01 3.20 16 35 H 0.06 2.37 6.61 -2.39 -0.02 2.36 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -57.72 329.78 3.22 -54.49 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.39 Total: 26.28 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 4.05 Total: -47.81 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.07 Total: -80.77 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.18 Total: 1.60 kcal Total: -57.72 3.22 -54.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.444 kcal (2) G-P(sol) polarization free energy of solvation -57.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds