Wall clock time and date at job start Mon Mar 30 2020 00:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47012 * 2 1 4 4 C 1.52999 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47376 * 54.99742 * 4 3 2 6 6 N 1.46899 * 109.47063 * 294.99812 * 4 3 2 7 7 C 1.46906 * 110.99910 * 155.85019 * 6 4 3 8 8 H 1.09001 * 109.46730 * 34.06886 * 7 6 4 9 9 C 1.50706 * 109.46817 * 154.06422 * 7 6 4 10 10 H 1.08002 * 119.99732 * 4.32184 * 9 7 6 11 11 C 1.37872 * 119.99844 * 184.31785 * 9 7 6 12 12 N 1.31517 * 120.00249 * 7.79740 * 11 9 7 13 13 Si 1.86801 * 119.99965 * 187.79216 * 11 9 7 14 14 H 1.48500 * 109.46807 * 90.00200 * 13 11 9 15 15 H 1.48497 * 109.47056 * 210.00079 * 13 11 9 16 16 H 1.48499 * 109.46947 * 330.00321 * 13 11 9 17 17 C 1.52995 * 109.47431 * 274.06374 * 7 6 4 18 18 C 1.53001 * 109.47319 * 295.24816 * 17 7 6 19 19 C 1.50706 * 109.47470 * 174.99708 * 4 3 2 20 20 C 1.33383 * 125.20452 * 260.00245 * 19 4 3 21 21 C 1.38425 * 114.92047 * 179.97438 * 20 19 4 22 22 C 1.33390 * 114.92008 * 359.97438 * 21 20 19 23 23 S 1.75885 * 125.19845 * 79.69355 * 19 4 3 24 24 H 1.09003 * 109.47511 * 59.99601 * 1 2 3 25 25 H 1.08995 * 109.47460 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46602 * 299.99889 * 1 2 3 27 27 H 1.08995 * 109.46597 * 239.99871 * 2 1 3 28 28 H 1.09002 * 109.47036 * 120.00164 * 2 1 3 29 29 H 1.08995 * 109.47545 * 60.00451 * 3 2 1 30 30 H 1.09002 * 109.47354 * 299.99970 * 3 2 1 31 31 H 1.00896 * 111.00068 * 31.90106 * 6 4 3 32 32 H 0.97003 * 119.99403 * 3.87989 * 12 11 9 33 33 H 1.09005 * 109.46846 * 55.24515 * 17 7 6 34 34 H 1.08995 * 109.47402 * 175.24024 * 17 7 6 35 35 H 1.08994 * 109.47113 * 185.57138 * 18 17 7 36 36 H 1.09003 * 109.46825 * 305.56498 * 18 17 7 37 37 H 1.08991 * 109.47361 * 65.56361 * 18 17 7 38 38 H 1.08003 * 122.54171 * 359.97438 * 20 19 4 39 39 H 1.08003 * 122.54087 * 179.97438 * 21 20 19 40 40 H 1.07999 * 125.20122 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 7 4.0602 0.8570 1.2543 7 6 5.4155 0.3150 1.0883 8 1 5.9699 0.9331 0.3822 9 6 6.1228 0.3149 2.4190 10 1 5.5940 0.6149 3.3117 11 6 7.4449 -0.0683 2.4969 12 7 8.1325 -0.2857 1.3970 13 14 8.2598 -0.2786 4.1646 14 1 8.0849 -1.6786 4.6279 15 1 9.7083 0.0275 4.0498 16 1 7.6339 0.6481 5.1417 17 6 5.3305 -1.1168 0.5558 18 6 4.6567 -2.0100 1.5993 19 6 4.0724 2.8579 -0.1246 20 6 4.5066 3.4238 -1.2516 21 6 4.9198 4.7386 -1.1225 22 6 4.8205 5.2406 0.1094 23 16 4.1685 4.0186 1.1934 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.4269 0.1491 1.5947 32 1 7.7267 -0.1223 0.5312 33 1 4.7459 -1.1281 -0.3642 34 1 6.3346 -1.4890 0.3527 35 1 4.6848 -3.0464 1.2631 36 1 5.1850 -1.9216 2.5487 37 1 3.6205 -1.6982 1.7298 38 1 4.5339 2.8962 -2.1936 39 1 5.2942 5.3145 -1.9560 40 1 5.0948 6.2450 0.3964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:46 Heat of formation + Delta-G solvation = 10.175964 kcal Electronic energy + Delta-G solvation = -18953.377499 eV Core-core repulsion = 16279.867953 eV Total energy + Delta-G solvation = -2673.509546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.32269 -36.68191 -34.91891 -32.42112 -31.10955 -29.03824 -27.49521 -25.26306 -24.01459 -23.53355 -21.96960 -20.54030 -19.52478 -18.81230 -16.74488 -16.43496 -15.44507 -15.00879 -14.85295 -13.95747 -13.69905 -13.52681 -13.26011 -12.79059 -12.65539 -12.52593 -12.36006 -12.12372 -11.88337 -11.51591 -11.36722 -11.05724 -10.88781 -10.76683 -10.73839 -10.49445 -10.24925 -10.11447 -10.05977 -10.00515 -9.83118 -8.61802 -8.21006 -8.14716 -7.88941 -7.38552 -6.25086 -3.92907 1.51061 2.21595 2.64547 3.18230 3.47395 3.51336 3.66904 4.57217 4.82548 5.04316 5.15009 5.18682 5.41180 5.44467 5.46586 5.67000 5.75972 5.81904 5.84510 5.92302 6.01843 6.07526 6.09943 6.14456 6.19819 6.33092 6.36469 6.47074 6.53162 6.68425 6.74353 6.89701 7.01971 7.09211 7.27514 7.33327 7.93863 8.31230 8.45156 8.69889 8.97763 9.74305 11.10962 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.007971 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.977402 B = 3511.820595 C = 4822.188074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.148 3.852 5 H 0.052 0.948 6 N -0.671 5.671 7 C 0.207 3.793 8 H 0.025 0.975 9 C -0.565 4.565 10 H 0.055 0.945 11 C 0.019 3.981 12 N -0.916 5.916 13 Si 1.064 2.936 14 H -0.290 1.290 15 H -0.287 1.287 16 H -0.289 1.289 17 C -0.150 4.150 18 C -0.131 4.131 19 C -0.134 4.134 20 C -0.166 4.166 21 C -0.134 4.134 22 C -0.250 4.250 23 S 0.159 5.841 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.334 0.666 32 H 0.268 0.732 33 H 0.018 0.982 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 4.749 -3.916 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.153 4.153 4 C 0.036 3.964 5 H 0.069 0.931 6 N -0.304 5.304 7 C 0.098 3.902 8 H 0.043 0.957 9 C -0.604 4.604 10 H 0.074 0.926 11 C -0.185 4.185 12 N -0.553 5.553 13 Si 0.893 3.107 14 H -0.217 1.217 15 H -0.213 1.213 16 H -0.215 1.215 17 C -0.190 4.190 18 C -0.188 4.188 19 C -0.253 4.253 20 C -0.197 4.197 21 C -0.165 4.165 22 C -0.386 4.386 23 S 0.424 5.576 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.512 4.876 -1.350 11.666 hybrid contribution -1.002 -0.295 -2.958 3.138 sum -11.514 4.581 -4.308 13.120 Atomic orbital electron populations 1.21739 0.95856 1.01339 1.01622 1.21597 0.95760 0.96929 1.02283 1.21783 0.94180 0.96838 1.02477 1.19952 0.93074 0.89092 0.94303 0.93053 1.60820 1.05427 1.39097 1.25053 1.19335 0.84845 0.88528 0.97457 0.95689 1.21808 0.97591 1.47706 0.93312 0.92647 1.25646 0.94300 0.94345 1.04195 1.70767 1.39710 1.46372 0.98499 0.83610 0.75945 0.76376 0.74720 1.21667 1.21345 1.21474 1.22199 1.00363 1.00715 0.95706 1.21601 0.98847 0.96790 1.01579 1.24699 1.05159 0.99688 0.95762 1.19972 1.05279 0.95601 0.98853 1.19962 1.03737 0.95572 0.97263 1.25689 1.11138 1.03884 0.97857 1.84344 1.60623 1.00949 1.11725 0.92995 0.92941 0.92702 0.92211 0.91505 0.91113 0.91750 0.84485 0.92077 0.96300 0.91447 0.95426 0.90772 0.94952 0.85375 0.85408 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.64 5.76 -26.73 -0.15 -1.80 16 3 C -0.11 -1.62 4.79 -26.73 -0.13 -1.75 16 4 C 0.15 2.59 2.28 -68.86 -0.16 2.44 16 5 H 0.05 0.95 7.15 -51.93 -0.37 0.58 16 6 N -0.67 -13.55 5.81 -102.16 -0.59 -14.14 16 7 C 0.21 4.95 1.76 -68.86 -0.12 4.83 16 8 H 0.03 0.69 6.96 -51.93 -0.36 0.32 16 9 C -0.57 -15.23 7.20 -34.44 -0.25 -15.48 16 10 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 11 C 0.02 0.52 5.25 -17.82 -0.09 0.42 16 12 N -0.92 -27.09 12.93 55.43 0.72 -26.37 16 13 Si 1.06 25.25 29.91 -169.99 -5.08 20.17 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.15 -3.36 5.46 -26.73 -0.15 -3.50 16 18 C -0.13 -2.66 9.40 37.16 0.35 -2.31 16 19 C -0.13 -2.41 5.07 -36.00 -0.18 -2.59 16 20 C -0.17 -2.79 10.04 -41.21 -0.41 -3.21 16 21 C -0.13 -2.08 10.18 -41.21 -0.42 -2.49 16 22 C -0.25 -3.87 11.23 29.04 0.33 -3.55 16 23 S 0.16 2.77 23.08 -107.50 -2.48 0.29 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.92 5.95 -51.93 -0.31 0.62 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.33 6.38 4.41 -39.29 -0.17 6.21 16 32 H 0.27 7.94 6.06 -40.82 -0.25 7.69 16 33 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 34 H 0.07 1.69 6.36 -51.93 -0.33 1.36 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.68 6.87 -51.93 -0.36 1.32 16 37 H 0.03 0.58 6.16 -51.93 -0.32 0.26 16 38 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 39 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -28.87 327.71 -9.81 -38.69 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.29 Total: 6.62 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -1.02 Total: -30.19 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.12 Total: -40.52 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.87 -9.81 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.863 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds