Wall clock time and date at job start Mon Mar 30 2020 00:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47012 * 2 1 4 4 C 1.52999 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47376 * 54.99742 * 4 3 2 6 6 N 1.46899 * 109.47063 * 294.99812 * 4 3 2 7 7 C 1.46906 * 110.99910 * 155.85019 * 6 4 3 8 8 H 1.09001 * 109.46730 * 34.06886 * 7 6 4 9 9 C 1.50706 * 109.46817 * 154.06422 * 7 6 4 10 10 H 1.08002 * 119.99732 * 4.32184 * 9 7 6 11 11 C 1.37872 * 119.99844 * 184.31785 * 9 7 6 12 12 N 1.31517 * 120.00249 * 7.79740 * 11 9 7 13 13 Si 1.86801 * 119.99965 * 187.79216 * 11 9 7 14 14 H 1.48500 * 109.46807 * 90.00200 * 13 11 9 15 15 H 1.48497 * 109.47056 * 210.00079 * 13 11 9 16 16 H 1.48499 * 109.46947 * 330.00321 * 13 11 9 17 17 C 1.52995 * 109.47431 * 274.06374 * 7 6 4 18 18 C 1.53001 * 109.47319 * 295.24816 * 17 7 6 19 19 C 1.50706 * 109.47470 * 174.99708 * 4 3 2 20 20 C 1.33383 * 125.20452 * 260.00245 * 19 4 3 21 21 C 1.38425 * 114.92047 * 179.97438 * 20 19 4 22 22 C 1.33390 * 114.92008 * 359.97438 * 21 20 19 23 23 S 1.75885 * 125.19845 * 79.69355 * 19 4 3 24 24 H 1.09003 * 109.47511 * 59.99601 * 1 2 3 25 25 H 1.08995 * 109.47460 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46602 * 299.99889 * 1 2 3 27 27 H 1.08995 * 109.46597 * 239.99871 * 2 1 3 28 28 H 1.09002 * 109.47036 * 120.00164 * 2 1 3 29 29 H 1.08995 * 109.47545 * 60.00451 * 3 2 1 30 30 H 1.09002 * 109.47354 * 299.99970 * 3 2 1 31 31 H 1.00896 * 111.00068 * 31.90106 * 6 4 3 32 32 H 0.97003 * 119.99403 * 3.87989 * 12 11 9 33 33 H 1.09005 * 109.46846 * 55.24515 * 17 7 6 34 34 H 1.08995 * 109.47402 * 175.24024 * 17 7 6 35 35 H 1.08994 * 109.47113 * 185.57138 * 18 17 7 36 36 H 1.09003 * 109.46825 * 305.56498 * 18 17 7 37 37 H 1.08991 * 109.47361 * 65.56361 * 18 17 7 38 38 H 1.08003 * 122.54171 * 359.97438 * 20 19 4 39 39 H 1.08003 * 122.54087 * 179.97438 * 21 20 19 40 40 H 1.07999 * 125.20122 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 7 4.0602 0.8570 1.2543 7 6 5.4155 0.3150 1.0883 8 1 5.9699 0.9331 0.3822 9 6 6.1228 0.3149 2.4190 10 1 5.5940 0.6149 3.3117 11 6 7.4449 -0.0683 2.4969 12 7 8.1325 -0.2857 1.3970 13 14 8.2598 -0.2786 4.1646 14 1 8.0849 -1.6786 4.6279 15 1 9.7083 0.0275 4.0498 16 1 7.6339 0.6481 5.1417 17 6 5.3305 -1.1168 0.5558 18 6 4.6567 -2.0100 1.5993 19 6 4.0724 2.8579 -0.1246 20 6 4.5066 3.4238 -1.2516 21 6 4.9198 4.7386 -1.1225 22 6 4.8205 5.2406 0.1094 23 16 4.1685 4.0186 1.1934 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.4269 0.1491 1.5947 32 1 7.7267 -0.1223 0.5312 33 1 4.7459 -1.1281 -0.3642 34 1 6.3346 -1.4890 0.3527 35 1 4.6848 -3.0464 1.2631 36 1 5.1850 -1.9216 2.5487 37 1 3.6205 -1.6982 1.7298 38 1 4.5339 2.8962 -2.1936 39 1 5.2942 5.3145 -1.9560 40 1 5.0948 6.2450 0.3964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:46 Heat of formation + Delta-G solvation = -5.087184 kcal Electronic energy + Delta-G solvation = -18954.039359 eV Core-core repulsion = 16279.867953 eV Total energy + Delta-G solvation = -2674.171406 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77905 -38.12345 -36.40845 -33.99751 -32.80561 -30.54903 -28.77606 -27.10638 -25.43138 -25.26845 -23.16858 -21.88741 -21.27209 -20.09481 -18.73801 -17.79352 -16.85087 -16.40447 -16.19604 -15.64428 -15.40198 -15.00489 -14.80092 -14.32384 -14.11268 -13.81648 -13.69703 -13.40852 -13.11447 -13.04165 -12.80712 -12.62842 -12.57724 -12.23282 -11.98358 -11.95385 -11.88740 -11.76027 -11.62146 -11.53512 -11.41972 -10.62450 -10.33419 -9.45676 -9.25471 -9.06089 -8.46612 -6.14452 0.21046 0.90395 1.33891 1.54751 1.62485 1.79434 1.90951 2.61479 3.29488 3.45601 3.81400 4.00461 4.06192 4.26319 4.30504 4.34734 4.37385 4.47565 4.54473 4.65566 4.71662 4.76399 4.78045 4.87607 4.95972 5.06201 5.15341 5.22589 5.23716 5.25522 5.32191 5.40691 5.44493 5.47942 5.59125 5.65533 6.03673 6.25738 6.59214 6.78667 6.84091 7.59983 8.89095 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.007971 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.977402 B = 3511.820595 C = 4822.188074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C -0.104 4.104 4 C 0.150 3.850 5 H 0.040 0.960 6 N -0.672 5.672 7 C 0.218 3.782 8 H -0.014 1.014 9 C -0.565 4.565 10 H 0.044 0.956 11 C -0.028 4.028 12 N -0.941 5.941 13 Si 1.105 2.895 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.275 1.275 17 C -0.142 4.142 18 C -0.123 4.123 19 C -0.159 4.159 20 C -0.171 4.171 21 C -0.141 4.141 22 C -0.241 4.241 23 S 0.118 5.882 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.340 0.660 32 H 0.255 0.745 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 5.036 -4.007 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.142 4.142 4 C 0.038 3.962 5 H 0.057 0.943 6 N -0.306 5.306 7 C 0.109 3.891 8 H 0.004 0.996 9 C -0.603 4.603 10 H 0.062 0.938 11 C -0.226 4.226 12 N -0.580 5.580 13 Si 0.929 3.071 14 H -0.200 1.200 15 H -0.217 1.217 16 H -0.201 1.201 17 C -0.182 4.182 18 C -0.180 4.180 19 C -0.278 4.278 20 C -0.202 4.202 21 C -0.171 4.171 22 C -0.376 4.376 23 S 0.382 5.618 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.898 5.164 -1.444 13.050 hybrid contribution -0.607 -0.305 -3.002 3.078 sum -12.505 4.858 -4.446 14.133 Atomic orbital electron populations 1.21701 0.93857 1.02256 1.02267 1.21576 0.97482 0.95648 1.01653 1.21712 0.91479 0.98026 1.02977 1.19994 0.95271 0.88602 0.92283 0.94250 1.60659 1.03942 1.38923 1.27031 1.18996 0.86216 0.88889 0.94998 0.99605 1.22043 0.97694 1.46482 0.94120 0.93772 1.26846 0.95437 0.94026 1.06267 1.70880 1.40065 1.48550 0.98530 0.83078 0.74910 0.77407 0.71732 1.20023 1.21739 1.20065 1.22048 0.99107 0.99834 0.97171 1.21502 0.99507 0.97594 0.99425 1.24821 1.06671 1.00014 0.96250 1.20307 1.04381 0.96429 0.99046 1.20297 1.03318 0.95244 0.98251 1.26018 1.10074 1.04424 0.97126 1.84391 1.61884 1.02411 1.13124 0.92019 0.91920 0.92419 0.92302 0.92609 0.91370 0.90382 0.83773 0.93442 0.94545 0.94650 0.93402 0.93258 0.92601 0.84220 0.82450 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.13 -3.00 5.76 30.59 0.18 -2.82 16 3 C -0.10 -2.80 4.79 30.59 0.15 -2.65 16 4 C 0.15 5.23 2.28 44.17 0.10 5.34 16 5 H 0.04 1.46 7.15 -2.39 -0.02 1.45 16 6 N -0.67 -27.23 5.81 -477.13 -2.77 -30.00 16 7 C 0.22 10.66 1.76 44.17 0.08 10.73 16 8 H -0.01 -0.79 6.96 -2.39 -0.02 -0.81 16 9 C -0.56 -30.92 7.20 25.60 0.18 -30.73 16 10 H 0.04 2.48 7.83 -2.91 -0.02 2.45 16 11 C -0.03 -1.58 5.25 84.65 0.44 -1.14 16 12 N -0.94 -57.07 12.93 21.45 0.28 -56.79 16 13 Si 1.10 51.03 29.91 68.60 2.05 53.08 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 17 C -0.14 -6.39 5.46 30.59 0.17 -6.22 16 18 C -0.12 -4.88 9.40 71.98 0.68 -4.20 16 19 C -0.16 -5.68 5.07 24.59 0.12 -5.55 16 20 C -0.17 -5.58 10.04 21.22 0.21 -5.37 16 21 C -0.14 -4.09 10.18 21.22 0.22 -3.88 16 22 C -0.24 -7.08 11.23 66.72 0.75 -6.33 16 23 S 0.12 4.09 23.08 -56.49 -1.30 2.79 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.45 5.95 -2.39 -0.01 1.43 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.34 12.80 4.41 -89.70 -0.40 12.41 16 32 H 0.26 15.75 6.06 -92.71 -0.56 15.18 16 33 H 0.04 1.48 7.44 -2.38 -0.02 1.46 16 34 H 0.03 1.81 6.36 -2.39 -0.02 1.80 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.05 2.20 6.87 -2.39 -0.02 2.18 16 37 H 0.06 1.92 6.16 -2.39 -0.01 1.91 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -62.99 327.71 3.07 -59.93 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.82 Total: 25.80 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 3.99 Total: -54.80 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.49 Total: -86.79 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal Total: -62.99 3.07 -59.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.840 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds