Wall clock time and date at job start Mon Mar 30 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46854 * 2 1 4 4 C 1.52999 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47138 * 305.00298 * 4 3 2 6 6 N 1.46897 * 109.46987 * 65.00173 * 4 3 2 7 7 C 1.46897 * 111.00059 * 206.37961 * 6 4 3 8 8 H 1.09000 * 109.47216 * 323.82370 * 7 6 4 9 9 C 1.50706 * 109.47280 * 83.82222 * 7 6 4 10 10 H 1.08000 * 119.99871 * 5.49528 * 9 7 6 11 11 C 1.37878 * 120.00338 * 185.49391 * 9 7 6 12 12 N 1.31511 * 119.99978 * 190.68725 * 11 9 7 13 13 Si 1.86799 * 119.99798 * 10.68605 * 11 9 7 14 14 H 1.48502 * 109.47303 * 88.49377 * 13 11 9 15 15 H 1.48497 * 109.46962 * 208.49328 * 13 11 9 16 16 H 1.48497 * 109.47245 * 328.49256 * 13 11 9 17 17 C 1.53001 * 109.47348 * 203.82101 * 7 6 4 18 18 C 1.53002 * 109.46983 * 62.95425 * 17 7 6 19 19 C 1.50698 * 109.47249 * 185.00542 * 4 3 2 20 20 C 1.33388 * 125.20851 * 105.48999 * 19 4 3 21 21 C 1.38423 * 114.92270 * 179.85710 * 20 19 4 22 22 C 1.33386 * 114.92193 * 0.43150 * 21 20 19 23 23 S 1.75882 * 109.59407 * 359.76652 * 22 21 20 24 24 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47029 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47051 * 59.99773 * 1 2 3 27 27 H 1.08999 * 109.47029 * 240.00120 * 2 1 3 28 28 H 1.09000 * 109.47051 * 120.00226 * 2 1 3 29 29 H 1.09005 * 109.46807 * 60.00368 * 3 2 1 30 30 H 1.08993 * 109.47334 * 300.00292 * 3 2 1 31 31 H 1.00903 * 110.99955 * 330.33445 * 6 4 3 32 32 H 0.96997 * 119.99470 * 180.02562 * 12 11 9 33 33 H 1.09004 * 109.47502 * 182.95381 * 17 7 6 34 34 H 1.08997 * 109.47213 * 302.95694 * 17 7 6 35 35 H 1.08999 * 109.46970 * 63.88394 * 18 17 7 36 36 H 1.08994 * 109.47351 * 183.88088 * 18 17 7 37 37 H 1.09003 * 109.46916 * 303.88209 * 18 17 7 38 38 H 1.08003 * 122.53625 * 0.02562 * 20 19 4 39 39 H 1.07999 * 122.53802 * 180.19314 * 21 20 19 40 40 H 1.07995 * 125.20457 * 179.79278 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0601 0.8572 -1.2543 7 6 5.3939 0.2683 -1.0748 8 1 5.9706 0.8796 -0.3807 9 6 5.2569 -1.1267 -0.5213 10 1 4.2780 -1.5681 -0.4059 11 6 6.3811 -1.8394 -0.1620 12 7 6.2854 -3.1203 0.1201 13 14 8.0404 -0.9856 -0.0761 14 1 8.2334 -0.4143 1.2809 15 1 9.1177 -1.9681 -0.3575 16 1 8.0890 0.1043 -1.0836 17 6 6.1128 0.2131 -2.4243 18 6 6.3176 1.6347 -2.9516 19 6 4.0722 2.8580 0.1246 20 6 4.6025 3.3922 1.2258 21 6 4.9971 4.7132 1.1015 22 6 4.7790 5.2545 -0.0979 23 16 4.0419 4.0607 -1.1586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.4091 0.1751 -1.6137 32 1 7.0763 -3.6216 0.3731 33 1 7.0814 -0.2715 -2.3005 34 1 5.5107 -0.3544 -3.1338 35 1 6.9764 2.1811 -2.2767 36 1 6.7673 1.5930 -3.9436 37 1 5.3549 2.1426 -3.0101 38 1 4.7178 2.8354 2.1440 39 1 5.4440 5.2649 1.9153 40 1 5.0187 6.2702 -0.3754 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049544318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:49 Heat of formation + Delta-G solvation = 15.654670 kcal Electronic energy + Delta-G solvation = -19012.632836 eV Core-core repulsion = 16339.360865 eV Total energy + Delta-G solvation = -2673.271971 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.20148 -36.57916 -34.67347 -32.24047 -31.65184 -29.40561 -27.57325 -26.16454 -24.04275 -22.51484 -21.82229 -20.24387 -19.74877 -18.83678 -16.98250 -16.54320 -15.35830 -15.14608 -14.65695 -14.41724 -13.78849 -13.39187 -13.08512 -12.77228 -12.69097 -12.52464 -12.25211 -12.04366 -11.84248 -11.55229 -11.46190 -11.37737 -10.94566 -10.78746 -10.73882 -10.48053 -10.30515 -10.23723 -10.15906 -9.72095 -9.42581 -9.11961 -8.49794 -8.22553 -8.01322 -7.43188 -6.14056 -4.12300 1.41516 2.08938 2.50927 3.11626 3.27136 3.36618 3.41106 4.39682 4.89958 5.16403 5.22002 5.31911 5.34217 5.36395 5.55324 5.80032 5.85105 5.90811 5.95620 6.05496 6.11765 6.16821 6.21111 6.31748 6.37342 6.42233 6.47180 6.57573 6.69048 6.70675 6.77929 6.83313 6.87653 7.10835 7.23744 7.39495 7.58933 8.00136 8.37212 8.48487 8.90536 9.52261 10.98771 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.008586 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.537124 B = 3260.272645 C = 4304.850240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.112 4.112 4 C 0.151 3.849 5 H 0.073 0.927 6 N -0.675 5.675 7 C 0.189 3.811 8 H 0.028 0.972 9 C -0.547 4.547 10 H 0.073 0.927 11 C 0.078 3.922 12 N -0.895 5.895 13 Si 0.857 3.143 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.242 1.242 17 C -0.115 4.115 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.166 4.166 21 C -0.130 4.130 22 C -0.248 4.248 23 S 0.128 5.872 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.340 0.660 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 12.933 -0.672 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.151 4.151 4 C 0.039 3.961 5 H 0.091 0.909 6 N -0.307 5.307 7 C 0.080 3.920 8 H 0.046 0.954 9 C -0.586 4.586 10 H 0.091 0.909 11 C -0.125 4.125 12 N -0.532 5.532 13 Si 0.685 3.315 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.166 1.166 17 C -0.154 4.154 18 C -0.200 4.200 19 C -0.245 4.245 20 C -0.196 4.196 21 C -0.161 4.161 22 C -0.384 4.384 23 S 0.392 5.608 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.531 13.377 -2.383 15.076 hybrid contribution 1.490 -0.550 2.250 2.754 sum -5.041 12.827 -0.132 13.782 Atomic orbital electron populations 1.21744 0.96285 1.01282 1.01206 1.21564 0.95174 0.96578 1.03120 1.21762 0.94159 0.97138 1.02003 1.19928 0.93034 0.88173 0.95004 0.90945 1.60790 1.05685 1.39047 1.25143 1.19482 0.86307 0.93438 0.92811 0.95397 1.21710 0.94961 0.98693 1.43228 0.90931 1.24932 0.98887 0.94300 0.94348 1.69956 1.29985 1.06931 1.46314 0.87369 0.84163 0.80762 0.79243 1.20750 1.21558 1.16580 1.21926 0.99946 0.94899 0.98606 1.21763 1.01306 0.98711 0.98264 1.24850 1.04285 0.99629 0.95696 1.20096 1.04179 0.95595 0.99711 1.20030 1.03175 0.95287 0.97607 1.25610 1.10682 1.03644 0.98418 1.84166 1.59778 1.01267 1.15601 0.92948 0.93213 0.93032 0.91249 0.91625 0.91945 0.91588 0.83997 0.92754 0.92582 0.93034 0.94611 0.95190 0.91661 0.84899 0.85289 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.13 -1.85 5.77 -26.73 -0.15 -2.01 16 3 C -0.11 -1.64 4.78 -26.73 -0.13 -1.77 16 4 C 0.15 2.64 2.28 -68.87 -0.16 2.48 16 5 H 0.07 1.45 7.54 -51.92 -0.39 1.06 16 6 N -0.67 -12.84 5.21 -102.17 -0.53 -13.37 16 7 C 0.19 4.25 1.38 -68.86 -0.09 4.15 16 8 H 0.03 0.68 6.51 -51.93 -0.34 0.34 16 9 C -0.55 -14.48 8.69 -34.44 -0.30 -14.78 16 10 H 0.07 2.06 7.97 -52.49 -0.42 1.65 16 11 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 12 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 13 Si 0.86 21.04 25.85 -169.99 -4.39 16.64 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.24 -5.62 5.13 56.52 0.29 -5.33 16 17 C -0.12 -2.50 4.93 -26.73 -0.13 -2.63 16 18 C -0.14 -2.69 9.83 37.16 0.37 -2.33 16 19 C -0.13 -2.10 5.13 -36.00 -0.18 -2.28 16 20 C -0.17 -2.64 10.03 -41.21 -0.41 -3.06 16 21 C -0.13 -1.84 10.18 -41.21 -0.42 -2.25 16 22 C -0.25 -3.38 11.23 29.04 0.33 -3.05 16 23 S 0.13 1.92 23.06 -107.50 -2.48 -0.56 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.10 6.43 -51.93 -0.33 0.77 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.34 6.47 6.16 -39.29 -0.24 6.23 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.06 1.29 4.44 -51.93 -0.23 1.06 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 38 H 0.13 2.03 8.06 -52.48 -0.42 1.60 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -28.36 329.22 -9.35 -37.71 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.66 Total: 7.41 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -1.02 Total: -26.85 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.24 Total: -39.31 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.39 Total: 16.64 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.48 Total: -0.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.36 -9.35 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.361 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds