Wall clock time and date at job start Mon Mar 30 2020 00:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46854 * 2 1 4 4 C 1.52999 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47138 * 305.00298 * 4 3 2 6 6 N 1.46897 * 109.46987 * 65.00173 * 4 3 2 7 7 C 1.46897 * 111.00059 * 206.37961 * 6 4 3 8 8 H 1.09000 * 109.47216 * 323.82370 * 7 6 4 9 9 C 1.50706 * 109.47280 * 83.82222 * 7 6 4 10 10 H 1.08000 * 119.99871 * 5.49528 * 9 7 6 11 11 C 1.37878 * 120.00338 * 185.49391 * 9 7 6 12 12 N 1.31511 * 119.99978 * 190.68725 * 11 9 7 13 13 Si 1.86799 * 119.99798 * 10.68605 * 11 9 7 14 14 H 1.48502 * 109.47303 * 88.49377 * 13 11 9 15 15 H 1.48497 * 109.46962 * 208.49328 * 13 11 9 16 16 H 1.48497 * 109.47245 * 328.49256 * 13 11 9 17 17 C 1.53001 * 109.47348 * 203.82101 * 7 6 4 18 18 C 1.53002 * 109.46983 * 62.95425 * 17 7 6 19 19 C 1.50698 * 109.47249 * 185.00542 * 4 3 2 20 20 C 1.33388 * 125.20851 * 105.48999 * 19 4 3 21 21 C 1.38423 * 114.92270 * 179.85710 * 20 19 4 22 22 C 1.33386 * 114.92193 * 0.43150 * 21 20 19 23 23 S 1.75882 * 109.59407 * 359.76652 * 22 21 20 24 24 H 1.09005 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47029 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47051 * 59.99773 * 1 2 3 27 27 H 1.08999 * 109.47029 * 240.00120 * 2 1 3 28 28 H 1.09000 * 109.47051 * 120.00226 * 2 1 3 29 29 H 1.09005 * 109.46807 * 60.00368 * 3 2 1 30 30 H 1.08993 * 109.47334 * 300.00292 * 3 2 1 31 31 H 1.00903 * 110.99955 * 330.33445 * 6 4 3 32 32 H 0.96997 * 119.99470 * 180.02562 * 12 11 9 33 33 H 1.09004 * 109.47502 * 182.95381 * 17 7 6 34 34 H 1.08997 * 109.47213 * 302.95694 * 17 7 6 35 35 H 1.08999 * 109.46970 * 63.88394 * 18 17 7 36 36 H 1.08994 * 109.47351 * 183.88088 * 18 17 7 37 37 H 1.09003 * 109.46916 * 303.88209 * 18 17 7 38 38 H 1.08003 * 122.53625 * 0.02562 * 20 19 4 39 39 H 1.07999 * 122.53802 * 180.19314 * 21 20 19 40 40 H 1.07995 * 125.20457 * 179.79278 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0601 0.8572 -1.2543 7 6 5.3939 0.2683 -1.0748 8 1 5.9706 0.8796 -0.3807 9 6 5.2569 -1.1267 -0.5213 10 1 4.2780 -1.5681 -0.4059 11 6 6.3811 -1.8394 -0.1620 12 7 6.2854 -3.1203 0.1201 13 14 8.0404 -0.9856 -0.0761 14 1 8.2334 -0.4143 1.2809 15 1 9.1177 -1.9681 -0.3575 16 1 8.0890 0.1043 -1.0836 17 6 6.1128 0.2131 -2.4243 18 6 6.3176 1.6347 -2.9516 19 6 4.0722 2.8580 0.1246 20 6 4.6025 3.3922 1.2258 21 6 4.9971 4.7132 1.1015 22 6 4.7790 5.2545 -0.0979 23 16 4.0419 4.0607 -1.1586 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.4091 0.1751 -1.6137 32 1 7.0763 -3.6216 0.3731 33 1 7.0814 -0.2715 -2.3005 34 1 5.5107 -0.3544 -3.1338 35 1 6.9764 2.1811 -2.2767 36 1 6.7673 1.5930 -3.9436 37 1 5.3549 2.1426 -3.0101 38 1 4.7178 2.8354 2.1440 39 1 5.4440 5.2649 1.9153 40 1 5.0187 6.2702 -0.3754 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049544318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:48 Heat of formation + Delta-G solvation = -0.056724 kcal Electronic energy + Delta-G solvation = -19013.314133 eV Core-core repulsion = 16339.360865 eV Total energy + Delta-G solvation = -2673.953268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57585 -37.92856 -36.18811 -34.16465 -33.13925 -30.82836 -28.97510 -27.81969 -25.23723 -24.29419 -23.03734 -21.54045 -21.52915 -20.01669 -19.04267 -17.80955 -16.95609 -16.52851 -16.09592 -15.88010 -15.36010 -14.94232 -14.68401 -14.27222 -14.09632 -13.70935 -13.67220 -13.45461 -13.20671 -13.02047 -12.98040 -12.75406 -12.55582 -12.40146 -12.21770 -11.89193 -11.71279 -11.56213 -11.49220 -11.43011 -11.26466 -11.00650 -10.60663 -9.41118 -9.19563 -9.08488 -8.32459 -6.33109 0.25181 0.93589 1.29410 1.34714 1.35172 1.43500 1.95795 2.32343 3.04405 3.48894 3.88120 4.08736 4.13259 4.33013 4.39061 4.48138 4.58632 4.63172 4.68878 4.77301 4.79087 4.82016 4.85155 4.94498 5.00751 5.11561 5.24360 5.27538 5.30778 5.34358 5.40888 5.48478 5.51972 5.55080 5.56503 5.69591 5.75569 6.12894 6.41748 6.67032 6.83434 7.35092 8.83550 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.008586 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.537124 B = 3260.272645 C = 4304.850240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C -0.101 4.101 4 C 0.154 3.846 5 H 0.036 0.964 6 N -0.661 5.661 7 C 0.200 3.800 8 H 0.016 0.984 9 C -0.539 4.539 10 H 0.039 0.961 11 C 0.024 3.976 12 N -0.942 5.942 13 Si 0.913 3.087 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.218 1.218 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.172 4.172 21 C -0.141 4.141 22 C -0.234 4.234 23 S 0.134 5.866 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.338 0.662 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 15.992 -1.532 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.139 4.139 4 C 0.041 3.959 5 H 0.054 0.946 6 N -0.292 5.292 7 C 0.090 3.910 8 H 0.034 0.966 9 C -0.578 4.578 10 H 0.057 0.943 11 C -0.175 4.175 12 N -0.582 5.582 13 Si 0.738 3.262 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.141 1.141 17 C -0.155 4.155 18 C -0.190 4.190 19 C -0.275 4.275 20 C -0.203 4.203 21 C -0.171 4.171 22 C -0.370 4.370 23 S 0.398 5.602 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.172 0.828 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.444 16.462 -3.253 17.975 hybrid contribution 1.369 -1.489 2.551 3.256 sum -5.074 14.973 -0.702 15.825 Atomic orbital electron populations 1.21693 0.93797 1.01893 1.02470 1.21515 0.97342 0.96321 1.01074 1.21684 0.92091 0.97067 1.03065 1.19861 0.94844 0.88518 0.92632 0.94614 1.60801 1.04315 1.38112 1.26016 1.19274 0.88173 0.90655 0.92947 0.96591 1.22024 0.93358 1.00404 1.42047 0.94279 1.25696 1.02603 0.94723 0.94470 1.70088 1.30961 1.08600 1.48577 0.86476 0.79842 0.80341 0.79556 1.20972 1.21614 1.14080 1.21855 0.98887 0.96977 0.97760 1.21659 1.01907 0.96241 0.99237 1.24715 1.06079 0.99532 0.97134 1.20326 1.03770 0.96710 0.99462 1.20242 1.03514 0.94555 0.98802 1.26007 1.08866 1.04533 0.97570 1.84062 1.60006 1.00994 1.15138 0.92740 0.91990 0.91657 0.93006 0.94019 0.90734 0.90401 0.84189 0.92845 0.93905 0.93318 0.94793 0.92907 0.90969 0.85321 0.82848 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.73 5.77 30.60 0.18 -3.55 16 3 C -0.10 -2.91 4.78 30.59 0.15 -2.76 16 4 C 0.15 5.41 2.28 44.17 0.10 5.51 16 5 H 0.04 1.51 7.54 -2.38 -0.02 1.50 16 6 N -0.66 -25.23 5.21 -477.16 -2.49 -27.72 16 7 C 0.20 9.00 1.38 44.17 0.06 9.07 16 8 H 0.02 0.78 6.51 -2.39 -0.02 0.76 16 9 C -0.54 -29.54 8.69 25.60 0.22 -29.31 16 10 H 0.04 2.35 7.97 -2.91 -0.02 2.33 16 11 C 0.02 1.35 5.40 84.66 0.46 1.81 16 12 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 13 Si 0.91 43.86 25.85 68.60 1.77 45.64 16 14 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 16 H -0.22 -9.57 5.13 99.48 0.51 -9.06 16 17 C -0.12 -4.90 4.93 30.60 0.15 -4.75 16 18 C -0.13 -4.64 9.83 71.98 0.71 -3.93 16 19 C -0.16 -5.04 5.13 24.59 0.13 -4.91 16 20 C -0.17 -5.27 10.03 21.22 0.21 -5.05 16 21 C -0.14 -3.57 10.18 21.22 0.22 -3.36 16 22 C -0.23 -5.52 11.23 66.72 0.75 -4.77 16 23 S 0.13 3.67 23.06 -56.49 -1.30 2.37 16 24 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.71 6.43 -2.39 -0.02 1.70 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.34 13.14 6.16 -89.69 -0.55 12.58 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.04 1.90 4.44 -2.38 -0.01 1.89 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.41 7.45 -2.39 -0.02 2.39 16 38 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -62.19 329.22 2.58 -59.61 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.26 Total: 26.70 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 4.04 Total: -48.57 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.19 Total: -85.74 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.77 Total: 45.64 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.37 kcal Total: -62.19 2.58 -59.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049544318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.554 kcal (2) G-P(sol) polarization free energy of solvation -62.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds