Wall clock time and date at job start Mon Mar 30 2020 00:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 N 1.46906 * 109.46670 * 119.99733 * 2 1 3 5 5 C 1.46899 * 110.99761 * 169.44282 * 4 2 1 6 6 C 1.52996 * 109.47301 * 293.95087 * 5 4 2 7 7 C 1.53000 * 109.47529 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47266 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00052 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99723 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46758 * 90.00368 * 12 10 8 14 14 H 1.48499 * 109.46637 * 210.00057 * 12 10 8 15 15 H 1.48496 * 109.47286 * 330.00094 * 12 10 8 16 16 C 1.46898 * 110.99643 * 293.39303 * 4 2 1 17 17 C 1.50707 * 109.46779 * 160.08751 * 16 4 2 18 18 C 1.33386 * 125.20858 * 95.40736 * 17 16 4 19 19 C 1.38424 * 114.92374 * 179.97438 * 18 17 16 20 20 C 1.33387 * 114.91984 * 359.97438 * 19 18 17 21 21 S 1.75887 * 125.19766 * 275.10063 * 17 16 4 22 22 H 1.08991 * 109.47065 * 300.51417 * 1 2 3 23 23 H 1.09000 * 109.46681 * 60.51615 * 1 2 3 24 24 H 1.08994 * 109.47214 * 180.51116 * 1 2 3 25 25 H 1.09003 * 109.47485 * 239.99370 * 2 1 3 26 26 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46892 * 299.99654 * 3 2 1 28 28 H 1.09003 * 109.47293 * 59.99252 * 3 2 1 29 29 H 1.08999 * 109.47461 * 53.95386 * 5 4 2 30 30 H 1.09002 * 109.47064 * 173.95351 * 5 4 2 31 31 H 1.08999 * 109.47107 * 300.00515 * 6 5 4 32 32 H 1.09002 * 109.46846 * 60.00130 * 6 5 4 33 33 H 1.08999 * 109.47152 * 300.00250 * 7 6 5 34 34 H 1.09002 * 109.47145 * 60.00075 * 7 6 5 35 35 H 0.97002 * 119.99279 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47388 * 280.07751 * 16 4 2 37 37 H 1.08994 * 109.47475 * 40.08779 * 16 4 2 38 38 H 1.08005 * 122.53437 * 359.95580 * 18 17 16 39 39 H 1.08000 * 122.53902 * 180.02562 * 19 18 17 40 40 H 1.07999 * 125.20358 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 3.4662 -0.9336 1.1146 6 6 3.7530 -1.9211 -0.0182 7 6 5.2596 -2.1728 -0.1063 8 6 5.5421 -3.1450 -1.2226 9 1 4.7284 -3.5438 -1.8101 10 6 6.8393 -3.5261 -1.4931 11 7 7.0858 -4.3741 -2.4675 12 14 8.2466 -2.8367 -0.4763 13 1 8.4933 -3.7208 0.6910 14 1 9.4723 -2.7659 -1.3116 15 1 7.8928 -1.4753 -0.0001 16 6 1.6816 0.0588 2.4158 17 6 1.7421 -0.8615 3.6077 18 6 2.7938 -1.0056 4.4155 19 6 2.6168 -1.9107 5.4477 20 6 1.4212 -2.5013 5.4786 21 16 0.4340 -1.9043 4.1509 22 1 -0.3633 0.5218 0.8853 23 1 -0.3633 0.5058 -0.8946 24 1 -0.3633 -1.0276 0.0092 25 1 1.8934 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.9802 0.0068 0.9157 30 1 3.8212 -1.3494 2.0576 31 1 3.2389 -2.8615 0.1807 32 1 3.3980 -1.5053 -0.9612 33 1 5.7740 -1.2325 -0.3050 34 1 5.6142 -2.5887 0.8367 35 1 7.9985 -4.6419 -2.6580 36 1 2.3935 0.8733 2.5494 37 1 0.6753 0.4671 2.3228 38 1 3.7138 -0.4577 4.2745 39 1 3.3880 -2.1220 6.1736 40 1 1.1061 -3.2314 6.2094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:31 Heat of formation + Delta-G solvation = 24.200651 kcal Electronic energy + Delta-G solvation = -18332.621521 eV Core-core repulsion = 15659.720131 eV Total energy + Delta-G solvation = -2672.901390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.05880 -37.37079 -34.03210 -32.33255 -31.74291 -29.47578 -27.33557 -26.92999 -25.08634 -22.92386 -22.56106 -20.42027 -19.13957 -19.06343 -17.27090 -16.59831 -15.72539 -15.38825 -15.32553 -14.30252 -14.13985 -13.93110 -13.48396 -13.06480 -12.81247 -12.76712 -12.51218 -12.23694 -12.17090 -12.02115 -11.77533 -11.52465 -11.27927 -11.16363 -10.87102 -10.73374 -10.66551 -10.54196 -9.84783 -9.59176 -9.55382 -9.12820 -8.64675 -8.49944 -8.38755 -8.08639 -6.00510 -3.97722 1.04111 1.70964 2.08605 2.78128 3.32746 3.39679 3.43362 4.11459 4.48312 4.82692 4.92633 5.07351 5.10538 5.19867 5.33520 5.36846 5.41056 5.56840 5.60181 5.60364 5.70579 5.72453 5.84881 5.92556 6.02281 6.13699 6.20080 6.26852 6.32133 6.34639 6.51491 6.61176 6.64718 6.96886 7.26053 7.31873 7.41336 7.52192 7.84635 8.59394 9.05487 9.62480 11.13186 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.005234 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.031350 B = 5348.777258 C = 6340.948198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 C -0.186 4.186 4 N -0.525 5.525 5 C 0.050 3.950 6 C -0.095 4.095 7 C -0.012 4.012 8 C -0.516 4.516 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.879 3.121 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.118 3.882 17 C -0.152 4.152 18 C -0.143 4.143 19 C -0.131 4.131 20 C -0.224 4.224 21 S 0.109 5.891 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 10.596 13.767 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.245 4.245 4 N -0.249 5.249 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.554 4.554 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.544 5.544 12 Si 0.707 3.293 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.012 4.012 17 C -0.270 4.270 18 C -0.174 4.174 19 C -0.162 4.162 20 C -0.360 4.360 21 S 0.372 5.628 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.243 9.752 13.200 22.398 hybrid contribution 2.836 1.187 0.973 3.225 sum -12.407 10.940 14.173 21.782 Atomic orbital electron populations 1.21859 0.94740 1.02407 1.01011 1.21809 0.95301 0.92437 0.94262 1.22487 1.02036 0.98098 1.01875 1.62241 1.16101 1.46166 1.00393 1.22385 0.85517 0.98741 1.01086 1.21459 0.98586 0.97738 0.95545 1.19541 0.91873 0.96656 0.96953 1.21150 0.93883 1.25006 1.15403 0.91046 1.25034 0.98810 0.94707 0.94991 1.69921 1.20313 1.33692 1.30523 0.86785 0.81925 0.80200 0.80411 1.20322 1.21453 1.19114 1.20561 1.01562 0.92210 0.86836 1.24411 0.97434 1.03794 1.01376 1.20133 0.99346 1.01600 0.96321 1.20118 0.97542 0.98355 1.00144 1.25581 0.98833 1.07556 1.03999 1.84162 1.17091 1.38354 1.23205 0.93149 0.92401 0.91742 0.88653 0.92150 0.92151 0.92860 0.95068 0.91054 0.92095 0.92880 0.96980 0.97175 0.92823 0.92896 0.89811 0.84693 0.84631 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.16 37.16 0.34 -1.20 16 2 C 0.07 0.90 2.79 -67.71 -0.19 0.71 16 3 C -0.19 -2.13 8.52 37.16 0.32 -1.81 16 4 N -0.53 -7.46 4.37 -228.08 -1.00 -8.46 16 5 C 0.05 0.83 4.67 -3.83 -0.02 0.81 16 6 C -0.10 -1.94 5.10 -26.73 -0.14 -2.08 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 9 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 12 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 16 C 0.12 1.43 4.07 -4.97 -0.02 1.41 16 17 C -0.15 -1.94 5.60 -36.00 -0.20 -2.14 16 18 C -0.14 -1.80 9.00 -41.21 -0.37 -2.17 16 19 C -0.13 -1.52 10.18 -41.21 -0.42 -1.94 16 20 C -0.22 -2.49 11.23 29.04 0.33 -2.16 16 21 S 0.11 1.28 23.33 -107.50 -2.51 -1.23 16 22 H 0.05 0.50 6.29 -51.93 -0.33 0.17 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.10 1.39 6.07 -51.93 -0.32 1.08 16 26 H 0.06 0.77 6.60 -51.93 -0.34 0.42 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 29 H 0.03 0.51 6.43 -51.93 -0.33 0.17 16 30 H 0.07 1.21 6.61 -51.93 -0.34 0.87 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 1.07 6.36 -51.93 -0.33 0.74 16 33 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.05 0.62 7.32 -51.93 -0.38 0.24 16 37 H 0.08 0.91 5.88 -51.93 -0.31 0.61 16 38 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -31.01 325.49 -9.75 -40.76 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.34 Total: -1.30 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.92 Total: -24.51 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.22 Total: -36.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.01 -9.75 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.964 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds