Wall clock time and date at job start Mon Mar 30 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 N 1.46906 * 109.46670 * 119.99733 * 2 1 3 5 5 C 1.46899 * 110.99761 * 169.44282 * 4 2 1 6 6 C 1.52996 * 109.47301 * 293.95087 * 5 4 2 7 7 C 1.53000 * 109.47529 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47266 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00052 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 119.99723 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46758 * 90.00368 * 12 10 8 14 14 H 1.48499 * 109.46637 * 210.00057 * 12 10 8 15 15 H 1.48496 * 109.47286 * 330.00094 * 12 10 8 16 16 C 1.46898 * 110.99643 * 293.39303 * 4 2 1 17 17 C 1.50707 * 109.46779 * 160.08751 * 16 4 2 18 18 C 1.33386 * 125.20858 * 95.40736 * 17 16 4 19 19 C 1.38424 * 114.92374 * 179.97438 * 18 17 16 20 20 C 1.33387 * 114.91984 * 359.97438 * 19 18 17 21 21 S 1.75887 * 125.19766 * 275.10063 * 17 16 4 22 22 H 1.08991 * 109.47065 * 300.51417 * 1 2 3 23 23 H 1.09000 * 109.46681 * 60.51615 * 1 2 3 24 24 H 1.08994 * 109.47214 * 180.51116 * 1 2 3 25 25 H 1.09003 * 109.47485 * 239.99370 * 2 1 3 26 26 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46892 * 299.99654 * 3 2 1 28 28 H 1.09003 * 109.47293 * 59.99252 * 3 2 1 29 29 H 1.08999 * 109.47461 * 53.95386 * 5 4 2 30 30 H 1.09002 * 109.47064 * 173.95351 * 5 4 2 31 31 H 1.08999 * 109.47107 * 300.00515 * 6 5 4 32 32 H 1.09002 * 109.46846 * 60.00130 * 6 5 4 33 33 H 1.08999 * 109.47152 * 300.00250 * 7 6 5 34 34 H 1.09002 * 109.47145 * 60.00075 * 7 6 5 35 35 H 0.97002 * 119.99279 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47388 * 280.07751 * 16 4 2 37 37 H 1.08994 * 109.47475 * 40.08779 * 16 4 2 38 38 H 1.08005 * 122.53437 * 359.95580 * 18 17 16 39 39 H 1.08000 * 122.53902 * 180.02562 * 19 18 17 40 40 H 1.07999 * 125.20358 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 3.4662 -0.9336 1.1146 6 6 3.7530 -1.9211 -0.0182 7 6 5.2596 -2.1728 -0.1063 8 6 5.5421 -3.1450 -1.2226 9 1 4.7284 -3.5438 -1.8101 10 6 6.8393 -3.5261 -1.4931 11 7 7.0858 -4.3741 -2.4675 12 14 8.2466 -2.8367 -0.4763 13 1 8.4933 -3.7208 0.6910 14 1 9.4723 -2.7659 -1.3116 15 1 7.8928 -1.4753 -0.0001 16 6 1.6816 0.0588 2.4158 17 6 1.7421 -0.8615 3.6077 18 6 2.7938 -1.0056 4.4155 19 6 2.6168 -1.9107 5.4477 20 6 1.4212 -2.5013 5.4786 21 16 0.4340 -1.9043 4.1509 22 1 -0.3633 0.5218 0.8853 23 1 -0.3633 0.5058 -0.8946 24 1 -0.3633 -1.0276 0.0092 25 1 1.8934 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.9802 0.0068 0.9157 30 1 3.8212 -1.3494 2.0576 31 1 3.2389 -2.8615 0.1807 32 1 3.3980 -1.5053 -0.9612 33 1 5.7740 -1.2325 -0.3050 34 1 5.6142 -2.5887 0.8367 35 1 7.9985 -4.6419 -2.6580 36 1 2.3935 0.8733 2.5494 37 1 0.6753 0.4671 2.3228 38 1 3.7138 -0.4577 4.2745 39 1 3.3880 -2.1220 6.1736 40 1 1.1061 -3.2314 6.2094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:30 Heat of formation + Delta-G solvation = 6.198428 kcal Electronic energy + Delta-G solvation = -18333.402156 eV Core-core repulsion = 15659.720131 eV Total energy + Delta-G solvation = -2673.682025 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12525 -38.29731 -35.90259 -33.97548 -33.05928 -30.80332 -28.59891 -28.01547 -26.35100 -24.20810 -23.76529 -22.13221 -20.27218 -20.02840 -18.90084 -18.12873 -16.78295 -16.61833 -16.30189 -16.11393 -15.60453 -15.03605 -14.80414 -14.54912 -14.11283 -13.75356 -13.65081 -13.54285 -13.24892 -13.11289 -13.05350 -12.96744 -12.57579 -12.43195 -12.16702 -12.05388 -11.81161 -11.73395 -11.58433 -11.45680 -11.30400 -11.11188 -10.75925 -9.56626 -9.29103 -9.16617 -8.29640 -6.33663 0.14251 0.82825 1.20091 1.34742 1.36535 1.48714 1.88247 2.35784 3.03243 3.05590 3.86537 3.95706 4.09984 4.22371 4.27755 4.31240 4.34825 4.45419 4.61383 4.69818 4.72892 4.74213 4.81294 4.82207 4.85190 4.98689 4.99965 5.07511 5.20475 5.25682 5.31297 5.40489 5.45268 5.52842 5.61486 5.64179 5.66688 6.15708 6.23363 6.30913 6.74319 7.30765 8.87535 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.005234 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.031350 B = 5348.777258 C = 6340.948198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 C -0.180 4.180 4 N -0.535 5.535 5 C 0.065 3.935 6 C -0.085 4.085 7 C -0.007 4.007 8 C -0.532 4.532 9 H 0.028 0.972 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.952 3.048 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.245 1.245 16 C 0.122 3.878 17 C -0.170 4.170 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.222 4.222 21 S 0.101 5.899 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.266 0.734 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 12.367 15.846 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 C -0.238 4.238 4 N -0.259 5.259 5 C -0.063 4.063 6 C -0.123 4.123 7 C -0.045 4.045 8 C -0.570 4.570 9 H 0.046 0.954 10 C -0.194 4.194 11 N -0.594 5.594 12 Si 0.775 3.225 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.169 1.169 16 C -0.007 4.007 17 C -0.288 4.288 18 C -0.183 4.183 19 C -0.174 4.174 20 C -0.358 4.358 21 S 0.364 5.636 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.233 11.536 15.285 24.470 hybrid contribution 2.734 0.558 0.272 2.804 sum -12.499 12.094 15.557 23.335 Atomic orbital electron populations 1.21804 0.93019 1.02092 1.02426 1.21840 0.96646 0.92984 0.92726 1.22418 1.01045 0.97137 1.03248 1.62150 1.14269 1.47655 1.01817 1.22069 0.87512 0.97741 0.98974 1.21261 0.95791 0.98050 0.97191 1.19466 0.94588 0.95413 0.95061 1.21493 0.93055 1.26001 1.16425 0.95369 1.26048 1.02075 0.94955 0.96279 1.70079 1.21311 1.35396 1.32579 0.85633 0.77738 0.80438 0.78693 1.19180 1.20815 1.16882 1.20588 1.02535 0.92042 0.85529 1.24552 0.97907 1.04489 1.01859 1.20360 0.99516 1.01809 0.96585 1.20372 0.98279 0.98328 1.00468 1.25918 0.98483 1.07542 1.03865 1.84160 1.17256 1.38442 1.23750 0.91747 0.90941 0.92937 0.91162 0.93554 0.91007 0.91270 0.94314 0.91222 0.94022 0.93403 0.96247 0.96622 0.92502 0.92067 0.88345 0.84207 0.82892 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.16 71.98 0.66 -2.04 16 2 C 0.07 1.62 2.79 44.91 0.13 1.75 16 3 C -0.18 -3.73 8.52 71.98 0.61 -3.12 16 4 N -0.54 -14.56 4.37 -875.52 -3.82 -18.38 16 5 C 0.06 2.08 4.67 86.30 0.40 2.48 16 6 C -0.08 -3.49 5.10 30.59 0.16 -3.33 16 7 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 8 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 9 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 10 C 0.00 0.17 5.47 84.66 0.46 0.63 16 11 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 12 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 16 C 0.12 2.71 4.07 85.56 0.35 3.06 16 17 C -0.17 -4.04 5.60 24.59 0.14 -3.90 16 18 C -0.15 -3.53 9.00 21.22 0.19 -3.34 16 19 C -0.14 -3.05 10.18 21.22 0.22 -2.84 16 20 C -0.22 -4.49 11.23 66.72 0.75 -3.74 16 21 S 0.10 2.23 23.33 -56.49 -1.32 0.91 16 22 H 0.06 1.10 6.29 -2.39 -0.02 1.08 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 2.07 6.07 -2.39 -0.01 2.05 16 26 H 0.05 1.09 6.60 -2.39 -0.02 1.08 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.21 6.75 -2.39 -0.02 1.20 16 29 H 0.04 1.19 6.43 -2.39 -0.02 1.17 16 30 H 0.07 2.27 6.61 -2.39 -0.02 2.25 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.98 6.36 -2.39 -0.02 1.97 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 34 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 35 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.06 1.27 7.32 -2.39 -0.02 1.26 16 37 H 0.10 1.89 5.88 -2.39 -0.01 1.87 16 38 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -67.64 325.49 2.42 -65.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.95 Total: 12.35 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 4.43 Total: -46.20 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.53 Total: -79.32 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.91 kcal Total: -67.64 2.42 -65.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.419 kcal (2) G-P(sol) polarization free energy of solvation -67.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds