Wall clock time and date at job start Mon Mar 30 2020 01:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48497 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47162 * 300.00728 * 3 2 1 6 6 H 1.48502 * 109.46824 * 60.00281 * 3 2 1 7 7 C 1.38810 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00408 * 201.42508 * 7 2 1 9 9 N 1.36941 * 119.99605 * 21.42692 * 7 2 1 10 10 C 1.46506 * 119.99680 * 217.57629 * 9 7 2 11 11 C 1.52998 * 109.47287 * 275.31016 * 10 9 7 12 12 C 1.50699 * 109.47164 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99820 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00157 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00493 * 37.57677 * 9 7 2 16 16 C 1.53010 * 109.46945 * 89.99736 * 15 9 7 17 17 C 1.50705 * 109.46881 * 180.02562 * 16 15 9 18 18 C 1.29437 * 117.95980 * 94.73806 * 17 16 15 19 19 C 1.50072 * 124.07567 * 180.74717 * 18 17 16 20 20 C 1.53022 * 110.14383 * 342.87148 * 19 18 17 21 21 C 1.53397 * 108.44052 * 49.43476 * 20 19 18 22 22 C 1.50063 * 117.96070 * 275.00092 * 17 16 15 23 23 H 0.97003 * 119.99370 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47054 * 35.31208 * 10 9 7 25 25 H 1.09005 * 109.47107 * 155.31147 * 10 9 7 26 26 H 1.09004 * 109.47000 * 300.00227 * 11 10 9 27 27 H 1.08995 * 109.47064 * 60.00178 * 11 10 9 28 28 H 0.96700 * 117.00072 * 179.97438 * 14 12 11 29 29 H 1.09000 * 109.47095 * 330.00602 * 15 9 7 30 30 H 1.08992 * 109.47918 * 209.99936 * 15 9 7 31 31 H 1.09000 * 109.46517 * 60.00512 * 16 15 9 32 32 H 1.09001 * 109.47146 * 300.00225 * 16 15 9 33 33 H 1.08005 * 117.96476 * 0.72849 * 18 17 16 34 34 H 1.09001 * 109.36040 * 222.66278 * 19 18 17 35 35 H 1.08999 * 109.35598 * 103.07235 * 19 18 17 36 36 H 1.08997 * 109.64170 * 289.74864 * 20 19 18 37 37 H 1.09003 * 109.64357 * 169.11965 * 20 19 18 38 38 H 1.09000 * 109.64193 * 172.87650 * 21 20 19 39 39 H 1.08994 * 109.63744 * 52.24841 * 21 20 19 40 40 H 1.09001 * 109.35709 * 282.79774 * 22 17 16 41 41 H 1.09001 * 109.36104 * 42.51770 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0343 -1.2346 0.3411 9 7 1.3965 -2.3468 -0.4343 10 6 1.6642 -3.6211 0.2373 11 6 2.9329 -4.2476 -0.3445 12 6 3.2079 -5.5586 0.3459 13 8 2.4650 -5.9517 1.2139 14 8 4.2775 -6.2901 -0.0041 15 6 0.4723 -2.2974 -1.5699 16 6 1.2478 -2.5260 -2.8689 17 6 0.2971 -2.4745 -4.0371 18 6 0.1611 -1.3478 -4.6597 19 6 -0.7577 -1.1380 -5.8276 20 6 -1.1631 -2.4859 -6.4279 21 6 -1.6382 -3.4001 -5.2914 22 6 -0.4374 -3.7310 -4.4024 23 1 -0.4849 0.8401 0.0004 24 1 1.8012 -3.4475 1.3046 25 1 0.8223 -4.2964 0.0842 26 1 2.7959 -4.4212 -1.4119 27 1 3.7747 -3.5724 -0.1914 28 1 4.4127 -7.1236 0.4672 29 1 -0.0113 -1.3211 -1.6025 30 1 -0.2842 -3.0739 -1.4569 31 1 1.7313 -3.5023 -2.8363 32 1 2.0042 -1.7493 -2.9820 33 1 0.7450 -0.5062 -4.3172 34 1 -0.2483 -0.5433 -6.5858 35 1 -1.6500 -0.6079 -5.4946 36 1 -0.3058 -2.9373 -6.9271 37 1 -1.9724 -2.3399 -7.1433 38 1 -2.0499 -4.3192 -5.7083 39 1 -2.3995 -2.8878 -4.7032 40 1 0.2356 -4.4000 -4.9386 41 1 -0.7872 -4.2221 -3.4944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071737928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:55 Heat of formation + Delta-G solvation = -86.736000 kcal Electronic energy + Delta-G solvation = -20782.307076 eV Core-core repulsion = 17661.842241 eV Total energy + Delta-G solvation = -3120.464835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86711 -38.43575 -36.25699 -35.67448 -32.67351 -32.06928 -30.45403 -29.76767 -27.40142 -24.89483 -23.51793 -22.76022 -21.52970 -20.40526 -19.95520 -17.78548 -17.18354 -16.71310 -16.06829 -15.61949 -15.27889 -14.72004 -14.10206 -13.97305 -13.67069 -13.54239 -13.18534 -12.90503 -12.54813 -12.40542 -12.23616 -11.90478 -11.66933 -11.49412 -11.24266 -11.15212 -10.91226 -10.80354 -10.62619 -10.55556 -10.27259 -10.22757 -10.11630 -9.96248 -9.54882 -9.50220 -8.52290 -8.22115 -6.62612 -5.82178 -3.41959 2.57364 2.79679 3.32974 3.40459 3.43079 3.46413 4.45931 4.99167 5.00076 5.08242 5.28550 5.41836 5.54471 5.62037 5.67899 5.69987 5.78375 5.78743 5.82022 5.99639 6.08902 6.11349 6.16808 6.22637 6.26803 6.32685 6.47735 6.56605 6.63556 6.65662 6.74644 6.76829 7.02461 7.08770 7.28019 7.59797 7.75287 7.80300 8.21325 8.48464 9.15362 9.76437 10.34237 11.17783 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.007290 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.520973 B = 3839.805834 C = 5913.699441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.017 3.983 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.268 4.268 8 H 0.061 0.939 9 N -0.580 5.580 10 C 0.159 3.841 11 C -0.134 4.134 12 C 0.478 3.522 13 O -0.522 6.522 14 O -0.526 6.526 15 C 0.153 3.847 16 C -0.107 4.107 17 C -0.105 4.105 18 C -0.175 4.175 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.081 4.081 23 H 0.255 0.745 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.399 0.601 29 H 0.097 0.903 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -7.554 -9.365 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.397 4.397 8 H 0.079 0.921 9 N -0.298 5.298 10 C 0.031 3.969 11 C -0.175 4.175 12 C 0.321 3.679 13 O -0.410 6.410 14 O -0.337 6.337 15 C 0.027 3.973 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.193 4.193 19 C -0.121 4.121 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.118 4.118 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.257 0.743 29 H 0.115 0.885 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.921 -7.119 -9.290 11.740 hybrid contribution 0.668 0.351 0.298 0.811 sum 1.589 -6.768 -8.992 11.366 Atomic orbital electron populations 1.70021 1.05583 1.25713 1.50951 1.25180 0.94975 0.98742 0.99495 0.86370 0.79833 0.84036 0.77382 1.20017 1.21367 1.21592 1.19023 0.94239 0.85575 1.40889 0.92085 1.43827 1.51897 1.02560 1.31554 1.20647 0.91911 0.88239 0.96110 1.22434 1.04638 0.89096 1.01315 1.24205 0.76678 0.86392 0.80587 1.90678 1.47613 1.71388 1.31341 1.84630 1.47649 1.36879 1.64577 1.20955 0.90527 1.02674 0.83152 1.21497 0.97616 1.00687 0.94842 1.20945 0.98386 0.94623 0.96578 1.21791 1.01530 0.97755 0.98224 1.20366 0.98615 0.96950 0.96209 1.21583 1.00419 0.96123 0.97416 1.21601 0.97985 0.99104 0.97016 1.20380 0.96097 0.95927 0.99442 0.93518 0.92698 0.93672 0.88577 0.88028 0.74319 0.88535 0.95834 0.93456 0.91764 0.88049 0.91939 0.91508 0.92130 0.92386 0.92287 0.91708 0.91588 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 11.47 55.49 0.64 -24.23 16 2 C 0.02 0.46 4.95 -17.43 -0.09 0.38 16 3 Si 0.89 21.09 29.60 -169.99 -5.03 16.06 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.27 -7.03 9.45 -15.06 -0.14 -7.18 16 8 H 0.06 1.59 7.92 -52.49 -0.42 1.18 16 9 N -0.58 -13.84 2.43 -173.24 -0.42 -14.26 16 10 C 0.16 3.34 5.01 -4.04 -0.02 3.32 16 11 C -0.13 -2.32 6.11 -27.88 -0.17 -2.49 16 12 C 0.48 7.77 8.33 36.01 0.30 8.07 16 13 O -0.52 -9.94 16.74 -18.75 -0.31 -10.25 16 14 O -0.53 -6.76 13.42 -39.26 -0.53 -7.29 16 15 C 0.15 3.46 5.32 -4.04 -0.02 3.44 16 16 C -0.11 -2.04 5.55 -27.88 -0.15 -2.20 16 17 C -0.10 -1.76 5.09 -100.94 -0.51 -2.28 16 18 C -0.17 -2.89 9.37 -35.90 -0.34 -3.23 16 19 C -0.08 -1.14 6.12 -28.17 -0.17 -1.31 16 20 C -0.12 -1.40 6.01 -26.51 -0.16 -1.56 16 21 C -0.12 -1.50 6.01 -26.51 -0.16 -1.66 16 22 C -0.08 -1.16 5.80 -28.18 -0.16 -1.33 16 23 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.05 1.24 8.04 -51.93 -0.42 0.83 16 25 H 0.04 0.94 7.79 -51.93 -0.40 0.54 16 26 H 0.10 1.57 6.64 -51.93 -0.34 1.22 16 27 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.40 3.27 9.10 45.56 0.41 3.68 16 29 H 0.10 2.51 5.52 -51.93 -0.29 2.23 16 30 H 0.02 0.52 7.83 -51.93 -0.41 0.11 16 31 H 0.05 0.84 6.61 -51.93 -0.34 0.50 16 32 H 0.06 1.33 7.80 -51.93 -0.40 0.92 16 33 H 0.10 1.82 7.74 -52.48 -0.41 1.42 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -29.89 334.61 -8.37 -38.26 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.95 Total: 4.70 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.80 Total: -8.02 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.21 Total: -38.50 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.84 Total: -17.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.89 -8.37 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071737928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.479 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds