Wall clock time and date at job start Mon Mar 30 2020 01:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48497 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47162 * 300.00728 * 3 2 1 6 6 H 1.48502 * 109.46824 * 60.00281 * 3 2 1 7 7 C 1.38810 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00408 * 201.42508 * 7 2 1 9 9 N 1.36941 * 119.99605 * 21.42692 * 7 2 1 10 10 C 1.46506 * 119.99680 * 217.57629 * 9 7 2 11 11 C 1.52998 * 109.47287 * 275.31016 * 10 9 7 12 12 C 1.50699 * 109.47164 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99820 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00157 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00493 * 37.57677 * 9 7 2 16 16 C 1.53010 * 109.46945 * 89.99736 * 15 9 7 17 17 C 1.50705 * 109.46881 * 180.02562 * 16 15 9 18 18 C 1.29437 * 117.95980 * 94.73806 * 17 16 15 19 19 C 1.50072 * 124.07567 * 180.74717 * 18 17 16 20 20 C 1.53022 * 110.14383 * 342.87148 * 19 18 17 21 21 C 1.53397 * 108.44052 * 49.43476 * 20 19 18 22 22 C 1.50063 * 117.96070 * 275.00092 * 17 16 15 23 23 H 0.97003 * 119.99370 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47054 * 35.31208 * 10 9 7 25 25 H 1.09005 * 109.47107 * 155.31147 * 10 9 7 26 26 H 1.09004 * 109.47000 * 300.00227 * 11 10 9 27 27 H 1.08995 * 109.47064 * 60.00178 * 11 10 9 28 28 H 0.96700 * 117.00072 * 179.97438 * 14 12 11 29 29 H 1.09000 * 109.47095 * 330.00602 * 15 9 7 30 30 H 1.08992 * 109.47918 * 209.99936 * 15 9 7 31 31 H 1.09000 * 109.46517 * 60.00512 * 16 15 9 32 32 H 1.09001 * 109.47146 * 300.00225 * 16 15 9 33 33 H 1.08005 * 117.96476 * 0.72849 * 18 17 16 34 34 H 1.09001 * 109.36040 * 222.66278 * 19 18 17 35 35 H 1.08999 * 109.35598 * 103.07235 * 19 18 17 36 36 H 1.08997 * 109.64170 * 289.74864 * 20 19 18 37 37 H 1.09003 * 109.64357 * 169.11965 * 20 19 18 38 38 H 1.09000 * 109.64193 * 172.87650 * 21 20 19 39 39 H 1.08994 * 109.63744 * 52.24841 * 21 20 19 40 40 H 1.09001 * 109.35709 * 282.79774 * 22 17 16 41 41 H 1.09001 * 109.36104 * 42.51770 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0343 -1.2346 0.3411 9 7 1.3965 -2.3468 -0.4343 10 6 1.6642 -3.6211 0.2373 11 6 2.9329 -4.2476 -0.3445 12 6 3.2079 -5.5586 0.3459 13 8 2.4650 -5.9517 1.2139 14 8 4.2775 -6.2901 -0.0041 15 6 0.4723 -2.2974 -1.5699 16 6 1.2478 -2.5260 -2.8689 17 6 0.2971 -2.4745 -4.0371 18 6 0.1611 -1.3478 -4.6597 19 6 -0.7577 -1.1380 -5.8276 20 6 -1.1631 -2.4859 -6.4279 21 6 -1.6382 -3.4001 -5.2914 22 6 -0.4374 -3.7310 -4.4024 23 1 -0.4849 0.8401 0.0004 24 1 1.8012 -3.4475 1.3046 25 1 0.8223 -4.2964 0.0842 26 1 2.7959 -4.4212 -1.4119 27 1 3.7747 -3.5724 -0.1914 28 1 4.4127 -7.1236 0.4672 29 1 -0.0113 -1.3211 -1.6025 30 1 -0.2842 -3.0739 -1.4569 31 1 1.7313 -3.5023 -2.8363 32 1 2.0042 -1.7493 -2.9820 33 1 0.7450 -0.5062 -4.3172 34 1 -0.2483 -0.5433 -6.5858 35 1 -1.6500 -0.6079 -5.4946 36 1 -0.3058 -2.9373 -6.9271 37 1 -1.9724 -2.3399 -7.1433 38 1 -2.0499 -4.3192 -5.7083 39 1 -2.3995 -2.8878 -4.7032 40 1 0.2356 -4.4000 -4.9386 41 1 -0.7872 -4.2221 -3.4944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071737928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:54 Heat of formation + Delta-G solvation = -103.045959 kcal Electronic energy + Delta-G solvation = -20783.014329 eV Core-core repulsion = 17661.842241 eV Total energy + Delta-G solvation = -3121.172088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17630 -39.66865 -37.87369 -37.00428 -34.07855 -33.92698 -31.58795 -31.38439 -28.96264 -26.72754 -24.94964 -23.97144 -22.90150 -21.77757 -21.56955 -19.10154 -18.62798 -18.29983 -17.50643 -17.02745 -16.63679 -16.44710 -15.69306 -15.32717 -15.19791 -14.76630 -14.51161 -14.34070 -14.06387 -13.80201 -13.55871 -13.19589 -13.10330 -12.91285 -12.84918 -12.76269 -12.49557 -12.42818 -12.35230 -12.00744 -11.67831 -11.62544 -11.59607 -11.41808 -11.12023 -10.89014 -10.52428 -9.56356 -8.58987 -7.83832 -5.48115 1.26780 1.42258 1.47120 1.48245 1.56804 2.19070 2.52281 3.24005 3.66810 3.88097 4.00993 4.11140 4.13176 4.20228 4.38955 4.51212 4.58596 4.60525 4.68250 4.72329 4.77316 4.80116 4.94134 4.98060 5.04030 5.07131 5.10869 5.15921 5.25456 5.30850 5.39408 5.45694 5.52160 5.65101 5.68428 5.84487 5.91219 6.32394 6.45962 7.06852 7.15991 7.81926 8.35485 9.12331 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.007290 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.520973 B = 3839.805834 C = 5913.699441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.032 4.032 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.270 4.270 8 H 0.061 0.939 9 N -0.595 5.595 10 C 0.161 3.839 11 C -0.122 4.122 12 C 0.493 3.507 13 O -0.554 6.554 14 O -0.512 6.512 15 C 0.160 3.840 16 C -0.092 4.092 17 C -0.116 4.116 18 C -0.178 4.178 19 C -0.085 4.085 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.080 4.080 23 H 0.251 0.749 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.425 0.575 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -8.834 -11.119 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.230 4.230 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.400 4.400 8 H 0.079 0.921 9 N -0.315 5.315 10 C 0.034 3.966 11 C -0.162 4.162 12 C 0.337 3.663 13 O -0.445 6.445 14 O -0.325 6.325 15 C 0.034 3.966 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.197 4.197 19 C -0.122 4.122 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.117 4.117 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.286 0.714 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.782 -8.442 -11.053 14.022 hybrid contribution 0.460 0.678 0.886 1.207 sum 2.242 -7.764 -10.166 12.987 Atomic orbital electron populations 1.70150 1.06902 1.25980 1.52742 1.25856 0.95614 1.01551 0.99994 0.85441 0.79197 0.80416 0.76799 1.18870 1.21648 1.21894 1.19268 0.94292 0.86561 1.39891 0.92091 1.44002 1.52084 1.03014 1.32401 1.20576 0.93793 0.87314 0.94869 1.22036 1.02414 0.89904 1.01887 1.23697 0.76914 0.86076 0.79659 1.90685 1.48967 1.72134 1.32689 1.84538 1.45590 1.38012 1.64391 1.20780 0.90665 1.00557 0.84605 1.21228 0.97191 1.00612 0.94074 1.21024 0.98554 0.96196 0.95888 1.21960 1.01616 0.96733 0.99364 1.20419 0.97862 0.98606 0.95285 1.21579 1.01463 0.94571 0.97408 1.21613 0.96820 1.00325 0.96824 1.20405 0.96908 0.94539 0.99816 0.93984 0.95000 0.93830 0.87092 0.87877 0.71409 0.92102 0.95999 0.91904 0.93913 0.90572 0.90503 0.91617 0.91406 0.90098 0.89807 0.92957 0.89827 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 11.47 21.65 0.25 -53.13 16 2 C -0.03 -1.77 4.95 84.86 0.42 -1.35 16 3 Si 0.95 44.20 29.60 68.60 2.03 46.24 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 7 C -0.27 -14.44 9.45 84.03 0.79 -13.64 16 8 H 0.06 3.20 7.92 -2.91 -0.02 3.18 16 9 N -0.59 -28.99 2.43 -701.99 -1.71 -30.70 16 10 C 0.16 6.85 5.01 86.38 0.43 7.29 16 11 C -0.12 -4.08 6.11 29.85 0.18 -3.90 16 12 C 0.49 15.09 8.33 71.24 0.59 15.68 16 13 O -0.55 -20.50 16.74 21.97 0.37 -20.13 16 14 O -0.51 -11.54 13.42 -51.43 -0.69 -12.23 16 15 C 0.16 7.42 5.32 86.38 0.46 7.87 16 16 C -0.09 -3.52 5.55 29.85 0.17 -3.36 16 17 C -0.12 -3.86 5.09 -15.09 -0.08 -3.94 16 18 C -0.18 -5.90 9.37 27.04 0.25 -5.65 16 19 C -0.08 -2.16 6.12 29.66 0.18 -1.98 16 20 C -0.11 -2.34 6.01 30.73 0.18 -2.16 16 21 C -0.12 -2.67 6.01 30.73 0.18 -2.49 16 22 C -0.08 -2.13 5.80 29.66 0.17 -1.96 16 23 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 24 H 0.03 1.47 8.04 -2.39 -0.02 1.46 16 25 H 0.04 1.84 7.79 -2.38 -0.02 1.82 16 26 H 0.11 3.40 6.64 -2.39 -0.02 3.38 16 27 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 28 H 0.42 5.45 9.10 -74.06 -0.67 4.77 16 29 H 0.06 3.31 5.52 -2.39 -0.01 3.30 16 30 H 0.02 0.99 7.83 -2.39 -0.02 0.97 16 31 H 0.06 2.18 6.61 -2.39 -0.02 2.16 16 32 H 0.04 1.80 7.80 -2.39 -0.02 1.78 16 33 H 0.08 2.85 7.74 -2.91 -0.02 2.83 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 Total: -1.00 -65.64 334.61 4.53 -61.11 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.34 Total: 18.44 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 3.95 Total: -9.59 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.46 Total: -83.84 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.32 Total: -32.36 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.64 4.53 -61.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071737928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.932 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds