Wall clock time and date at job start Mon Mar 30 2020 01:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99676 * 2 1 4 4 H 1.48506 * 109.47076 * 239.99735 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46840 * 120.00135 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99242 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00095 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00103 * 270.00361 * 10 9 7 12 12 O 1.21292 * 119.99919 * 185.93338 * 11 10 9 13 13 C 1.50694 * 120.00392 * 5.93298 * 11 10 9 14 14 O 1.42900 * 109.47448 * 182.77877 * 13 11 10 15 15 C 1.42903 * 113.99819 * 180.02562 * 14 13 11 16 16 C 1.54271 * 110.03042 * 267.90521 * 15 14 13 17 17 C 1.54959 * 104.16136 * 217.13909 * 16 15 14 18 18 C 1.54896 * 102.77825 * 37.88426 * 17 16 15 19 19 C 1.53873 * 110.03061 * 150.68976 * 15 14 13 20 20 C 1.46506 * 119.99820 * 89.99924 * 10 9 7 21 21 C 1.52998 * 117.49779 * 196.37587 * 20 10 9 22 22 C 1.52999 * 117.49797 * 127.75241 * 20 10 9 23 23 H 0.96994 * 120.00204 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47156 * 60.00154 * 9 7 2 25 25 H 1.08995 * 109.47454 * 299.99878 * 9 7 2 26 26 H 1.09008 * 109.46992 * 302.77756 * 13 11 10 27 27 H 1.09000 * 109.47412 * 62.77320 * 13 11 10 28 28 H 1.08995 * 110.02109 * 29.29424 * 15 14 13 29 29 H 1.09000 * 110.48389 * 335.78720 * 16 15 14 30 30 H 1.09003 * 110.48254 * 98.42768 * 16 15 14 31 31 H 1.09006 * 110.72379 * 279.57731 * 17 16 15 32 32 H 1.09001 * 110.92953 * 156.29540 * 17 16 15 33 33 H 1.08993 * 110.48928 * 203.40557 * 18 17 16 34 34 H 1.08998 * 110.59076 * 80.82033 * 18 17 16 35 35 H 1.09000 * 110.03254 * 238.56239 * 19 15 14 36 36 H 1.08996 * 110.03423 * 359.97438 * 19 15 14 37 37 H 1.09003 * 115.54827 * 342.08052 * 20 10 9 38 38 H 1.09004 * 117.49749 * 359.97438 * 21 20 10 39 39 H 1.09000 * 117.50206 * 145.01700 * 21 20 10 40 40 H 1.08997 * 117.49729 * 214.97712 * 22 20 10 41 41 H 1.09004 * 117.49806 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6410 -4.1248 -1.1666 12 8 3.3434 -5.1136 -1.1694 13 6 2.2580 -3.4691 -2.4682 14 8 2.7861 -4.2282 -3.5577 15 6 2.4789 -3.6889 -4.8448 16 6 1.1769 -4.3169 -5.3838 17 6 1.4327 -4.4737 -6.9041 18 6 2.9249 -4.8855 -6.9597 19 6 3.5898 -4.0498 -5.8464 20 6 2.6790 -4.1694 1.2693 21 6 3.9321 -5.0464 1.2301 22 6 2.5605 -5.6821 1.4657 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 1.1716 -3.4267 -2.5479 27 1 2.6642 -2.4581 -2.4991 28 1 2.3720 -2.6061 -4.7799 29 1 1.0039 -5.2898 -4.9239 30 1 0.3308 -3.6533 -5.2049 31 1 1.2737 -3.5276 -7.4216 32 1 0.8005 -5.2545 -7.3268 33 1 3.3533 -4.6371 -7.9307 34 1 3.0366 -5.9504 -6.7557 35 1 4.0215 -3.1423 -6.2683 36 1 4.3635 -4.6360 -5.3506 37 1 2.5351 -3.5355 2.1443 38 1 4.4021 -5.2094 0.2602 39 1 4.6131 -4.9894 2.0793 40 1 2.3391 -6.0434 2.4699 41 1 2.1280 -6.2630 0.6511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071916122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:05 Heat of formation + Delta-G solvation = -58.036822 kcal Electronic energy + Delta-G solvation = -20961.997221 eV Core-core repulsion = 17842.776876 eV Total energy + Delta-G solvation = -3119.220345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.67861 -38.58046 -36.08630 -35.14524 -34.18852 -32.22608 -28.74837 -28.32493 -27.12376 -26.44404 -22.96260 -22.00316 -21.80004 -20.71139 -20.18169 -18.49426 -16.81081 -16.70247 -16.26071 -15.60186 -15.37691 -14.95593 -14.52603 -14.43186 -14.05954 -13.38066 -13.26730 -13.15820 -12.50325 -12.22128 -12.10300 -11.73498 -11.57620 -11.30207 -11.21005 -11.11269 -11.05778 -10.90933 -10.74867 -10.62168 -10.54377 -10.36355 -10.26091 -9.72305 -9.65156 -9.20836 -8.71560 -8.54110 -7.55076 -6.24421 -4.33064 3.20148 3.23984 3.25583 3.30583 3.42026 4.23987 4.38175 4.55240 4.63593 4.64714 4.96578 5.07684 5.24253 5.36133 5.49213 5.50870 5.53456 5.63732 5.64955 5.68381 5.77690 5.80379 5.87965 5.94016 5.97418 6.05170 6.15156 6.20948 6.27538 6.28282 6.33664 6.53993 6.73455 6.91060 7.10130 7.47161 7.63155 7.70819 7.97134 8.26664 8.73468 8.98952 9.35450 10.81799 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.006419 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.921986 B = 4361.261143 C = 5904.133286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.568 5.568 11 C 0.519 3.481 12 O -0.548 6.548 13 C 0.049 3.951 14 O -0.362 6.362 15 C 0.082 3.918 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.123 4.123 20 C 0.090 3.910 21 C -0.199 4.199 22 C -0.195 4.195 23 H 0.267 0.733 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -6.084 -8.181 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.298 5.298 11 C 0.308 3.692 12 O -0.428 6.428 13 C -0.030 4.030 14 O -0.280 6.280 15 C 0.024 3.976 16 C -0.187 4.187 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.015 4.015 21 C -0.237 4.237 22 C -0.234 4.234 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.564 -6.600 -8.157 10.802 hybrid contribution 0.072 1.437 0.157 1.447 sum 2.637 -5.163 -7.999 9.879 Atomic orbital electron populations 1.69911 1.06021 1.27557 1.49382 1.24950 0.94857 0.99322 0.94599 0.86559 0.79560 0.82472 0.78935 1.20061 1.21085 1.20021 1.21485 0.93693 0.90409 1.52515 0.91937 1.19488 0.87291 0.82500 0.98925 1.47578 1.44434 1.34824 1.02924 1.20114 0.80192 0.83768 0.85149 1.90463 1.38984 1.26133 1.87213 1.22321 0.99297 0.95679 0.85711 1.87995 1.76271 1.51022 1.12731 1.22803 0.94015 0.97258 0.83535 1.22936 0.97832 1.02138 0.95780 1.22434 0.96382 1.01206 0.95999 1.22325 0.95423 1.00100 0.98115 1.22211 0.98106 1.00449 0.95304 1.21534 1.00969 0.90760 0.88275 1.23753 0.91395 1.03572 1.04946 1.23190 1.01615 0.96837 1.01710 0.92357 0.94375 0.94168 0.90673 0.89204 0.91645 0.90445 0.91360 0.91517 0.91561 0.91758 0.91455 0.91180 0.90236 0.85542 0.84796 0.90090 0.89411 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.82 9.28 -34.44 -0.32 -14.14 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 5.58 4.96 -5.20 -0.03 5.56 16 10 N -0.57 -12.23 2.82 -167.47 -0.47 -12.71 16 11 C 0.52 11.25 7.54 -10.99 -0.08 11.17 16 12 O -0.55 -12.63 12.25 -14.35 -0.18 -12.80 16 13 C 0.05 0.96 5.04 36.00 0.18 1.14 16 14 O -0.36 -6.74 9.43 -55.13 -0.52 -7.25 16 15 C 0.08 1.21 3.38 -25.61 -0.09 1.12 16 16 C -0.15 -1.93 6.56 -25.03 -0.16 -2.10 16 17 C -0.12 -1.29 6.91 -24.70 -0.17 -1.46 16 18 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 19 C -0.12 -1.55 6.61 -25.61 -0.17 -1.72 16 20 C 0.09 1.74 6.61 -67.93 -0.45 1.29 16 21 C -0.20 -3.62 9.63 -26.73 -0.26 -3.88 16 22 C -0.19 -3.39 9.87 -26.73 -0.26 -3.65 16 23 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.04 0.91 6.41 -51.93 -0.33 0.58 16 25 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.08 1.40 7.08 -51.92 -0.37 1.03 16 27 H 0.09 1.78 8.00 -51.93 -0.42 1.37 16 28 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 29 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 37 H 0.13 2.34 8.14 -51.93 -0.42 1.92 16 38 H 0.13 2.78 5.22 -52.12 -0.27 2.51 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.75 7.60 -51.93 -0.39 1.35 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -28.24 332.94 -9.30 -37.54 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.79 Total: 4.86 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.08 Total: -6.52 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.26 Total: -35.98 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.70 Total: -20.06 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.24 -9.30 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.498 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds