Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99676 * 2 1 4 4 H 1.48506 * 109.47076 * 239.99735 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46840 * 120.00135 * 3 2 1 7 7 C 1.37879 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99242 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00095 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00103 * 270.00361 * 10 9 7 12 12 O 1.21292 * 119.99919 * 185.93338 * 11 10 9 13 13 C 1.50694 * 120.00392 * 5.93298 * 11 10 9 14 14 O 1.42900 * 109.47448 * 182.77877 * 13 11 10 15 15 C 1.42903 * 113.99819 * 180.02562 * 14 13 11 16 16 C 1.54271 * 110.03042 * 267.90521 * 15 14 13 17 17 C 1.54959 * 104.16136 * 217.13909 * 16 15 14 18 18 C 1.54896 * 102.77825 * 37.88426 * 17 16 15 19 19 C 1.53873 * 110.03061 * 150.68976 * 15 14 13 20 20 C 1.46506 * 119.99820 * 89.99924 * 10 9 7 21 21 C 1.52998 * 117.49779 * 196.37587 * 20 10 9 22 22 C 1.52999 * 117.49797 * 127.75241 * 20 10 9 23 23 H 0.96994 * 120.00204 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47156 * 60.00154 * 9 7 2 25 25 H 1.08995 * 109.47454 * 299.99878 * 9 7 2 26 26 H 1.09008 * 109.46992 * 302.77756 * 13 11 10 27 27 H 1.09000 * 109.47412 * 62.77320 * 13 11 10 28 28 H 1.08995 * 110.02109 * 29.29424 * 15 14 13 29 29 H 1.09000 * 110.48389 * 335.78720 * 16 15 14 30 30 H 1.09003 * 110.48254 * 98.42768 * 16 15 14 31 31 H 1.09006 * 110.72379 * 279.57731 * 17 16 15 32 32 H 1.09001 * 110.92953 * 156.29540 * 17 16 15 33 33 H 1.08993 * 110.48928 * 203.40557 * 18 17 16 34 34 H 1.08998 * 110.59076 * 80.82033 * 18 17 16 35 35 H 1.09000 * 110.03254 * 238.56239 * 19 15 14 36 36 H 1.08996 * 110.03423 * 359.97438 * 19 15 14 37 37 H 1.09003 * 115.54827 * 342.08052 * 20 10 9 38 38 H 1.09004 * 117.49749 * 359.97438 * 21 20 10 39 39 H 1.09000 * 117.50206 * 145.01700 * 21 20 10 40 40 H 1.08997 * 117.49729 * 214.97712 * 22 20 10 41 41 H 1.09004 * 117.49806 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6410 -4.1248 -1.1666 12 8 3.3434 -5.1136 -1.1694 13 6 2.2580 -3.4691 -2.4682 14 8 2.7861 -4.2282 -3.5577 15 6 2.4789 -3.6889 -4.8448 16 6 1.1769 -4.3169 -5.3838 17 6 1.4327 -4.4737 -6.9041 18 6 2.9249 -4.8855 -6.9597 19 6 3.5898 -4.0498 -5.8464 20 6 2.6790 -4.1694 1.2693 21 6 3.9321 -5.0464 1.2301 22 6 2.5605 -5.6821 1.4657 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 1.1716 -3.4267 -2.5479 27 1 2.6642 -2.4581 -2.4991 28 1 2.3720 -2.6061 -4.7799 29 1 1.0039 -5.2898 -4.9239 30 1 0.3308 -3.6533 -5.2049 31 1 1.2737 -3.5276 -7.4216 32 1 0.8005 -5.2545 -7.3268 33 1 3.3533 -4.6371 -7.9307 34 1 3.0366 -5.9504 -6.7557 35 1 4.0215 -3.1423 -6.2683 36 1 4.3635 -4.6360 -5.3506 37 1 2.5351 -3.5355 2.1443 38 1 4.4021 -5.2094 0.2602 39 1 4.6131 -4.9894 2.0793 40 1 2.3391 -6.0434 2.4699 41 1 2.1280 -6.2630 0.6511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071916122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = -71.899328 kcal Electronic energy + Delta-G solvation = -20962.598344 eV Core-core repulsion = 17842.776876 eV Total energy + Delta-G solvation = -3119.821468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31732 -39.80463 -37.51211 -36.60533 -35.92027 -34.12338 -29.86817 -29.52912 -28.99703 -27.76816 -24.88824 -23.56396 -23.24256 -21.63465 -21.30885 -20.11555 -18.69947 -18.13538 -17.93118 -16.89222 -16.83797 -16.52493 -16.24849 -15.65473 -15.49873 -14.84353 -14.66031 -14.31840 -14.25323 -13.89086 -13.64302 -13.36124 -12.99862 -12.90263 -12.65491 -12.50711 -12.38890 -12.15586 -12.05551 -12.02240 -11.94438 -11.53522 -11.48876 -11.46949 -11.22190 -10.67357 -10.53662 -10.29243 -9.26675 -8.22418 -6.38370 1.42537 1.43383 1.50541 1.57040 1.87645 2.39000 2.90413 3.06406 3.07940 3.59157 3.66807 3.72316 3.99223 4.03608 4.12508 4.18662 4.24287 4.33720 4.37479 4.52283 4.56378 4.71941 4.73227 4.79776 4.81770 4.92411 4.93449 5.02730 5.07219 5.13805 5.15556 5.20344 5.28061 5.40459 5.45255 5.65247 5.89470 5.99926 6.20137 6.48294 6.75975 7.24506 7.35993 8.82556 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.006419 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.921986 B = 4361.261143 C = 5904.133286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.252 3.748 10 N -0.570 5.570 11 C 0.511 3.489 12 O -0.564 6.564 13 C 0.060 3.940 14 O -0.381 6.381 15 C 0.068 3.932 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.062 3.938 21 C -0.193 4.193 22 C -0.175 4.175 23 H 0.269 0.731 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -5.778 -8.753 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.072 0.928 9 C 0.131 3.869 10 N -0.300 5.300 11 C 0.300 3.700 12 O -0.446 6.446 13 C -0.020 4.020 14 O -0.300 6.300 15 C 0.011 3.989 16 C -0.188 4.188 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.043 4.043 21 C -0.231 4.231 22 C -0.214 4.214 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.988 -6.307 -8.730 11.177 hybrid contribution -0.049 1.298 0.339 1.342 sum 2.939 -5.010 -8.391 10.205 Atomic orbital electron populations 1.69997 1.07208 1.28430 1.50059 1.25630 0.95546 1.02231 0.94156 0.85635 0.78439 0.78845 0.78967 1.19595 1.20555 1.19759 1.21620 0.93332 0.91419 1.52477 0.92800 1.19172 0.87236 0.82650 0.97803 1.47563 1.44098 1.34355 1.03945 1.20487 0.79946 0.83722 0.85826 1.90462 1.39710 1.26865 1.87571 1.22131 0.99348 0.95031 0.85448 1.87980 1.76613 1.51509 1.13883 1.23185 0.95952 0.97492 0.82313 1.22926 0.96937 1.01148 0.97770 1.22438 0.96480 1.02482 0.93882 1.22331 0.95361 0.99471 0.98360 1.22258 0.97111 1.01375 0.95302 1.21829 1.02626 0.92158 0.87650 1.23688 0.91714 1.02873 1.04779 1.23203 1.00525 0.94782 1.02867 0.92150 0.95135 0.95479 0.90318 0.89947 0.91558 0.91886 0.91198 0.90133 0.90104 0.89367 0.91852 0.89536 0.91896 0.84761 0.87407 0.87140 0.85970 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.29 21.45 0.28 -49.17 16 2 C 0.03 1.30 5.46 84.65 0.46 1.76 16 3 Si 0.96 40.85 29.54 68.60 2.03 42.87 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -28.17 9.28 25.60 0.24 -27.94 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.25 12.04 4.96 85.63 0.43 12.46 16 10 N -0.57 -24.91 2.82 -802.15 -2.26 -27.18 16 11 C 0.51 22.63 7.54 87.66 0.66 23.30 16 12 O -0.56 -26.58 12.25 15.96 0.20 -26.39 16 13 C 0.06 2.39 5.04 71.23 0.36 2.75 16 14 O -0.38 -14.51 9.43 -129.96 -1.23 -15.74 16 15 C 0.07 1.99 3.38 31.32 0.11 2.10 16 16 C -0.15 -3.81 6.56 31.70 0.21 -3.60 16 17 C -0.12 -2.17 6.91 31.91 0.22 -1.95 16 18 C -0.12 -2.26 6.83 31.67 0.22 -2.04 16 19 C -0.12 -2.98 6.61 31.32 0.21 -2.77 16 20 C 0.06 2.37 6.61 44.99 0.30 2.66 16 21 C -0.19 -6.82 9.63 30.59 0.29 -6.53 16 22 C -0.18 -5.88 9.87 30.59 0.30 -5.57 16 23 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 24 H 0.03 1.50 6.41 -2.39 -0.02 1.49 16 25 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 26 H 0.08 3.04 7.08 -2.38 -0.02 3.02 16 27 H 0.08 3.38 8.00 -2.39 -0.02 3.36 16 28 H 0.07 1.90 7.81 -2.39 -0.02 1.88 16 29 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 37 H 0.13 4.87 8.14 -2.39 -0.02 4.85 16 38 H 0.11 4.48 5.22 -5.44 -0.03 4.46 16 39 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.07 2.76 7.60 -2.38 -0.02 2.74 16 Total: -1.00 -59.96 332.94 3.99 -55.97 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.98 Total: 25.01 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.00 Total: -5.38 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.98 Total: -76.35 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.03 Total: -42.12 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -59.96 3.99 -55.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.932 kcal (2) G-P(sol) polarization free energy of solvation -59.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds