Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99681 * 2 1 4 4 H 1.48502 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00212 * 3 2 1 6 6 H 1.48498 * 109.47263 * 60.00254 * 3 2 1 7 7 C 1.38947 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 196.83256 * 7 2 1 9 9 N 1.37098 * 120.00098 * 16.83406 * 7 2 1 10 10 C 1.34768 * 119.99909 * 41.91395 * 9 7 2 11 11 O 1.21290 * 120.00461 * 5.47071 * 10 9 7 12 12 C 1.50703 * 119.99918 * 185.47800 * 10 9 7 13 13 C 1.53178 * 109.54566 * 165.33029 * 12 10 9 14 14 C 1.53087 * 109.16592 * 176.84828 * 13 12 10 15 15 O 1.42911 * 109.41188 * 302.38952 * 14 13 12 16 16 C 1.42902 * 114.09800 * 61.15693 * 15 14 13 17 17 C 1.53090 * 109.41436 * 298.84250 * 16 15 14 18 18 C 1.46502 * 119.99831 * 221.90765 * 9 7 2 19 19 C 1.54261 * 110.03164 * 62.50905 * 18 9 7 20 20 C 1.54961 * 104.16258 * 217.13671 * 19 18 9 21 21 C 1.54889 * 102.77648 * 37.88828 * 20 19 18 22 22 C 1.53881 * 110.03294 * 305.29272 * 18 9 7 23 23 H 0.97001 * 120.00148 * 4.96409 * 1 2 3 24 24 H 1.09000 * 109.61472 * 45.10307 * 12 10 9 25 25 H 1.09006 * 109.51723 * 296.75128 * 13 12 10 26 26 H 1.08994 * 109.52464 * 56.93819 * 13 12 10 27 27 H 1.08999 * 109.48421 * 62.36386 * 14 13 12 28 28 H 1.08992 * 109.48389 * 182.40811 * 14 13 12 29 29 H 1.09006 * 109.47848 * 178.85912 * 16 15 14 30 30 H 1.09003 * 109.49127 * 58.83206 * 16 15 14 31 31 H 1.09000 * 109.52352 * 297.70423 * 17 16 15 32 32 H 1.08999 * 109.52204 * 177.51890 * 17 16 15 33 33 H 1.08996 * 110.01142 * 183.90301 * 18 9 7 34 34 H 1.09000 * 110.48939 * 335.78206 * 19 18 9 35 35 H 1.09002 * 110.48905 * 98.42569 * 19 18 9 36 36 H 1.09005 * 110.71809 * 279.57689 * 20 19 18 37 37 H 1.08995 * 110.92705 * 156.29574 * 20 19 18 38 38 H 1.09007 * 110.48677 * 203.40700 * 21 20 19 39 39 H 1.08997 * 110.60197 * 80.82022 * 21 20 19 40 40 H 1.08996 * 110.02793 * 238.56878 * 22 18 9 41 41 H 1.08996 * 110.02927 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0541 -1.2234 0.2703 9 7 1.3674 -2.3650 -0.3449 10 6 0.5116 -2.3792 -1.3859 11 8 0.3834 -1.3922 -2.0791 12 6 -0.2862 -3.6213 -1.6887 13 6 -1.4225 -3.2773 -2.6566 14 6 -2.1784 -4.5580 -3.0197 15 8 -1.2687 -5.5010 -3.5903 16 6 -0.2116 -5.8959 -2.7135 17 6 0.6233 -4.6688 -2.3381 18 6 1.6124 -3.5911 0.4187 19 6 1.1590 -3.4023 1.8811 20 6 2.2167 -4.1753 2.7087 21 6 3.5321 -3.8776 1.9472 22 6 3.1206 -3.8936 0.4605 23 1 -0.4850 0.8369 -0.0727 24 1 -0.7030 -4.0227 -0.7649 25 1 -2.1056 -2.5735 -2.1809 26 1 -1.0084 -2.8301 -3.5603 27 1 -2.6263 -4.9829 -2.1214 28 1 -2.9614 -4.3258 -3.7416 29 1 0.4223 -6.6274 -3.2148 30 1 -0.6336 -6.3383 -1.8112 31 1 1.0788 -4.2497 -3.2354 32 1 1.4033 -4.9603 -1.6348 33 1 1.0766 -4.4255 -0.0336 34 1 1.1635 -2.3456 2.1485 35 1 0.1681 -3.8306 2.0316 36 1 2.0024 -5.2441 2.7063 37 1 2.2665 -3.7952 3.7290 38 1 4.2722 -4.6527 2.1465 39 1 3.9226 -2.8984 2.2244 40 1 3.3165 -4.8753 0.0294 41 1 3.6701 -3.1284 -0.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = -86.217340 kcal Electronic energy + Delta-G solvation = -22220.580425 eV Core-core repulsion = 19100.138081 eV Total energy + Delta-G solvation = -3120.442344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63797 -38.20397 -36.60932 -33.48569 -32.96395 -31.30611 -30.70004 -28.08832 -26.84862 -25.96426 -23.92429 -23.14997 -20.60139 -20.10986 -19.64995 -18.79526 -16.67445 -15.94586 -15.72350 -15.69526 -14.89610 -14.55893 -14.50117 -14.20436 -13.84657 -13.37690 -12.99162 -12.79273 -12.52764 -12.27224 -11.92609 -11.36703 -11.19816 -10.93875 -10.90966 -10.87932 -10.68547 -10.62065 -10.49046 -10.40938 -10.18791 -10.17055 -10.02270 -9.95563 -9.73469 -9.33224 -8.68469 -7.92539 -7.03268 -6.04768 -3.79502 3.32565 3.42049 3.43413 4.10630 4.23253 4.39899 4.88922 5.16867 5.17194 5.23020 5.25389 5.26769 5.38425 5.46289 5.57787 5.59623 5.73087 5.78307 5.90332 5.94492 6.05033 6.06191 6.14436 6.19208 6.23344 6.24999 6.32512 6.41958 6.44677 6.50833 6.60749 6.68044 6.80735 6.85710 6.97544 7.19220 7.42039 7.68915 8.33499 9.14288 9.26776 9.74882 10.39123 11.03162 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.008715 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.759196 B = 3212.113193 C = 4460.207471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.451 5.451 10 C 0.488 3.512 11 O -0.537 6.537 12 C -0.103 4.103 13 C -0.130 4.130 14 C 0.062 3.938 15 O -0.388 6.388 16 C 0.064 3.936 17 C -0.148 4.148 18 C 0.126 3.874 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.131 4.131 23 H 0.261 0.739 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -11.346 1.220 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.173 5.173 10 C 0.275 3.725 11 O -0.414 6.414 12 C -0.126 4.126 13 C -0.168 4.168 14 C -0.015 4.015 15 O -0.307 6.307 16 C -0.013 4.013 17 C -0.186 4.186 18 C 0.020 3.980 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.224 -10.768 0.728 10.795 hybrid contribution 0.346 0.976 0.460 1.133 sum 0.571 -9.792 1.188 9.880 Atomic orbital electron populations 1.69858 1.06341 1.27337 1.43601 1.25139 0.94762 0.99145 0.95070 0.86294 0.79893 0.83407 0.77348 1.19700 1.20851 1.21391 1.18885 0.93604 0.84162 1.49279 0.90518 1.43370 1.41569 1.07344 1.25019 1.19640 0.83332 0.87965 0.81542 1.90495 1.66154 1.35580 1.49194 1.21260 0.96403 0.96385 0.98506 1.21917 0.97430 0.96977 1.00485 1.22645 0.91629 0.89088 0.98139 1.87870 1.39813 1.61789 1.41223 1.22568 0.88963 0.95907 0.93867 1.22283 0.98579 0.95826 1.01886 1.21816 0.94464 0.89312 0.92373 1.22693 0.96669 1.02273 0.94954 1.22446 0.95915 0.99196 0.98480 1.22256 0.96764 1.00943 0.95514 1.22450 0.97360 1.00621 0.96520 0.92844 0.90778 0.90639 0.90424 0.93628 0.89193 0.89221 0.93475 0.90801 0.90382 0.91033 0.89288 0.93128 0.92540 0.92375 0.92912 0.91592 0.92989 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.56 11.59 55.50 0.64 -23.91 16 2 C 0.07 1.90 4.44 -17.47 -0.08 1.82 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.33 -8.86 7.56 -14.93 -0.11 -8.98 16 8 H 0.08 2.00 6.89 -52.49 -0.36 1.64 16 9 N -0.45 -10.87 2.48 -106.54 -0.26 -11.14 16 10 C 0.49 12.17 6.06 -10.99 -0.07 12.10 16 11 O -0.54 -15.77 13.74 5.55 0.08 -15.69 16 12 C -0.10 -2.01 1.74 -91.59 -0.16 -2.17 16 13 C -0.13 -2.41 4.89 -26.59 -0.13 -2.54 16 14 C 0.06 0.91 6.84 37.20 0.25 1.17 16 15 O -0.39 -6.08 10.77 -35.23 -0.38 -6.46 16 16 C 0.06 0.87 6.84 37.20 0.25 1.13 16 17 C -0.15 -2.40 5.05 -26.59 -0.13 -2.54 16 18 C 0.13 2.40 2.50 -66.81 -0.17 2.23 16 19 C -0.13 -2.34 6.43 -25.04 -0.16 -2.50 16 20 C -0.12 -1.80 6.91 -24.70 -0.17 -1.98 16 21 C -0.12 -1.76 6.83 -25.07 -0.17 -1.94 16 22 C -0.13 -2.22 6.18 -25.61 -0.16 -2.38 16 23 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 24 H 0.07 1.38 7.31 -51.93 -0.38 1.00 16 25 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.19 5.95 -51.93 -0.31 0.88 16 33 H 0.07 1.24 4.23 -51.93 -0.22 1.02 16 34 H 0.09 1.96 7.22 -51.93 -0.38 1.59 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.47 6.66 -51.93 -0.35 1.13 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -31.83 313.87 -7.83 -39.66 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.61 Total: 2.43 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.00 Total: -6.56 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.38 Total: -35.05 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.30 Total: -22.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.83 -7.83 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.554 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds